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Adrienne Roeder Address: Weill Institute for Cell and Molecular Biology and School of Integrative Plant Science, Section of Plant Biology Cornell University 239 Weill Hall Ithaca, NY 14853-7202 E-mail: [email protected] Office phone: (607) 255-4467 Laboratory phone: (607) 255-5119 Experience: 2017-present Nancy M. and Samuel C. Fleming Term Associate Professor 2011-2017 Nancy M. and Samuel C. Fleming Term Assistant Professor in the Weill Institute for Cell and Molecular Biology and the School of Integrative Plant Sciences, Section of Plant Biology, Cornell University A QBIO approach to understanding how variable cells form organs with reproducible size and shape. 2005-2011 Postdoctoral scholar in Biology, California Institute of Technology Advisor: Elliot Meyerowitz, Division of Biology Using live imaging, image processing, and computational modeling to understand cell size patterning in Arabidopsis sepal development Education: 1999-2005 Ph.D. in Biology, University of California, San Diego Advisor: Martin Yanofsky, Section of Cell and Developmental Biology Thesis: Drawing a line in the Arabidopsis fruit: how the valve margin forms at the border between the valve and the replum 1995-1999 B.S. in Biological Science, Stanford University Honors, Distinction, and Phi Beta Kappa Minor in Mathematical and Computational Science 1996-1999 Undergraduate research and honors thesis Stanford University Advisor: Chris Somerville, Department of Plant Biology, Carnegie Institution for Science Thesis: Arabidopsis thaliana embryos with mutations in the YODA gene are impaired in suspensor development Honors and Awards: 2019 Schwartz Research Fund Award for Women in Life Science 2016 National Science Foundation (NSF) CAREER award 2015 President’s Council of Cornell Women Affinito-Stewart Grant 2013-present Nancy M. and Samuel C. Fleming Term Assistant/Associate Professor 2008-2011 Moore Cell Center Fellowship 2005-2008 Helen Hay Whitney Postdoctoral Fellowship 1999-2004 Howard Hughes Medical Institute Predoctoral Fellowship 2002 UCSD Biology Excellence in Teaching Award 1999 Fox Award in Biological Sciences, Stanford University 1999 Stanford University Excellence in Teaching Award 1998 Howard Hughes Medical Institute Stanford University Undergraduate Research Fellowship for summer research

Adrienne Roeder Address: Experience · 2020-05-27 · Adrienne Roeder . Address: Weill Institute for Cell and Molecular Biology and School of Integrative Plant Science, Section of

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Page 1: Adrienne Roeder Address: Experience · 2020-05-27 · Adrienne Roeder . Address: Weill Institute for Cell and Molecular Biology and School of Integrative Plant Science, Section of

Adrienne Roeder Address: Weill Institute for Cell and Molecular Biology

and School of Integrative Plant Science, Section of Plant Biology Cornell University 239 Weill Hall Ithaca, NY 14853-7202

E-mail: [email protected] Office phone: (607) 255-4467 Laboratory phone: (607) 255-5119 Experience: 2017-present Nancy M. and Samuel C. Fleming Term Associate Professor 2011-2017 Nancy M. and Samuel C. Fleming Term Assistant Professor

in the Weill Institute for Cell and Molecular Biology and the School of Integrative Plant Sciences, Section of Plant Biology, Cornell University A QBIO approach to understanding how variable cells form organs with reproducible size and shape.

2005-2011 Postdoctoral scholar in Biology, California Institute of Technology

Advisor: Elliot Meyerowitz, Division of Biology Using live imaging, image processing, and computational modeling to understand cell size patterning in Arabidopsis sepal development

Education: 1999-2005 Ph.D. in Biology, University of California, San Diego

Advisor: Martin Yanofsky, Section of Cell and Developmental Biology Thesis: Drawing a line in the Arabidopsis fruit: how the valve margin forms at the border between the valve and the replum

1995-1999 B.S. in Biological Science, Stanford University Honors, Distinction, and Phi Beta Kappa Minor in Mathematical and Computational Science 1996-1999 Undergraduate research and honors thesis Stanford University

Advisor: Chris Somerville, Department of Plant Biology, Carnegie Institution for Science Thesis: Arabidopsis thaliana embryos with mutations in the YODA gene are impaired in suspensor development

Honors and Awards:

2019 Schwartz Research Fund Award for Women in Life Science 2016 National Science Foundation (NSF) CAREER award 2015 President’s Council of Cornell Women Affinito-Stewart Grant 2013-present Nancy M. and Samuel C. Fleming Term Assistant/Associate Professor 2008-2011 Moore Cell Center Fellowship 2005-2008 Helen Hay Whitney Postdoctoral Fellowship 1999-2004 Howard Hughes Medical Institute Predoctoral Fellowship 2002 UCSD Biology Excellence in Teaching Award 1999 Fox Award in Biological Sciences, Stanford University 1999 Stanford University Excellence in Teaching Award 1998 Howard Hughes Medical Institute Stanford University Undergraduate Research

Fellowship for summer research

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1998 Stanford University Excellence in Teaching Award 1995-1997 Stanford University Presidents Scholar grant for summer research 1997 1995 National Merit Scholarship Publications: Google Scholar ranking: h-index, 22; i10-index, 31. https://scholar.google.com/citations?user=-bUlP18AAAAJ&hl=en&oi=ao Authorship: In my field, first author indicates the person who performed most of the experiments. It is common to indicate equal contributions with an asterisk (*). In contrast, the principal investigator (PI) under whose guidance the research was conducted is listed as the last author. In interdisciplinary papers, it is common to have more than one PI who substantially guided the research; in this case, equal contributions are indicated as co-corresponding authors (^). In particular, the Human Frontiers in Sciences Program expects all Co-PIs to publish papers together. *=co-first authors ^ = corresponding author(s) Zhu, M., Chen, W., Mirabet, V., Hong, L., Bovio, S., Strauss, S., Schwarz, E.M., Tsugawa, S., Wang, Z.,

Smith, R.S.S, Li, C.-B., Hamant, O., Boudaoud, A.^, Roeder, A.H.K.^ Robust organ size requires robust timing of initiation orchestrated by focused auxin and cytokinin signalling. Preprint in BioRxiv DOI: 10.1101/2020.03.08.982629 Accepted to Nature Plants.

Moreno, S., Canales, J. Hong, L., Robinson, D., Roeder, A.H.K., and Gutierez, R.A.^ Nitrate-defines

shoot size: compensatory roles for endoreduplication and cell division in Arabidopsis thaliana growth. Current Biology 30, 1-13. DOI: 10.1016/j.cub.2020.03.036

Zhu, M. and Roeder, A.H.K.^ (2020) Plants are better engineers: the complexity of plant organ

morphogenesis. Current Opinion in Genetics and Development 63, 16-23. Vadde, B.V.L. and Roeder, A.H.K.^ (2020) Can the French Flag and Reaction Diffusion models explain

flower patterning? Celebrating the 50th Anniversary of the French Flag Model. Flowering Newsletter in the Journal of Experimental Botany doi:10.1093/jxb/eraa065.

Ripoll, J.-J.*^, Zhu, M.*, Brocke, S., Hon, C.T., Yanofsky, M.F., Boudaoud, A., and Roeder, A.H.K.^

(2019) Growth dynamics of the Arabidopsis fruit is mediated by cell expansion. PNAS 116, 25333–25342.

Roeder, A.H.K.^ (2019) Computational Image Processing in Microscopy. Teaching tools in Plant Biology.

The Plant Cell https://plantae.org/blog/new-teaching-tool-computational-image-processing-in-microscopy/ doi/10.1105/tpc.119.tt0819

Cammarata, J., Roeder, A.H.K., and Scanlon, M.J. (2019) Cytokinin and CLE signaling are highly

intertwined developmental regulators across tissues and species. Current Opinion in Plant Biology 51, 96-104.

Roeder, A.H.K.^ and Harrison, C.J.^ (2019) Editorial Overview: Scaling development through the plant

tree of life. Current Opinion in Plant Biology 47, A1-A4. Robinson, D.O., Coate, J.E., Singh, A., Hong, L., Busch, M. Foyle, J.J., Roeder, A.H.K.^ (2018) Ploidy

and Size at Multiple Scales in the Arabidopsis Sepal. Plant Cell 30, 2308-2329. doi:10.1105/tpc.18.00344.

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Cammarata, J., Roeder, A.H.K.^ (2018) Development: Cell Polarity Is Coordinated over an Entire Plant Leaf. Dispatch for Current Biology 28, R884-R887.

Whitewoods*, C.D., Cammarata*, J., Venza, Z.N., Sang, S., Crook, A., Aoyama, T., Wang, X.Y., Waller,

M., Kamisugi, Y., Cuming, A.C., Szövényi, P., Nimchuk, Z.L. Roeder, A.H.K., Scanlon, M., and Harrison, C.J.^ (2018) CLAVATA was a genetic novelty for the morphological innovation of 3D growth in land plants. Current Biology 28, 2365-2376.

Sapala, A.*, Runions, A.*, Routier-Kierzkowska, A.-L., Das Gupta, M., Hong, L., Hofhuis, H., Verger, S.,

Mosca, G., Li, C.-B., Hay, A., Hamant, O., Roeder, A.H.K., Tsiantis, M., Prusinkiewicz, P., Smith, R.S.^ (2018) Why plants make puzzle-shaped cells, and how their shape emerges. eLife. 7, e32794.

Hong, L.*, Dumond, M.*, Zhu, M., Tsugawa, S., Li, C.-B., Boudaoud, A., Hamant, O., and Roeder., A.H.K.^

(2018) Heterogeneity and robustness in plant morphogenesis: from cells to organs. Annual Review of Plant Biology. 69:18.1–18.27.

Roeder, A.H.K.^ (2018) Use it or average it: stochasticity in plant development. Current Opinion in Plant

Biology 41, 8-15. Robinson, D.O. and Roeder, A.H.K.^ (2017) Small RNAs turn over a new leaf as morphogens. Preview

for Developmental Cell 43, 253-254. Tsugawa, S., Hervieux, N., Kierzkowski, D., Routier-Kierzkowska, A.-L., Sapala, A., Hamant, O., Smith,

R.S., Roeder, A.H.K., Boudaoud, A., and Li, C.-B.^ (2017) Clones of cells switch from reduction to enhancement of size variability in Arabidopsis sepals. Development. 144, 4398-4405.

Meyer, H.M.*, Teles, J.*, Formosa-Jordan, P.*, Refahi, Y., San-Bento, R., Ingram, G.,

Jönsson^, H., Locke, J.^, and Roeder, A.H.K.^ (2017) Fluctuations of the transcription factor ATML1 generates the pattern of giant cells in the Arabidopsis sepal. eLife 6, e19131 doi: 10.7554/eLife.19131

Hong, L., Brown., J, Seagerson, N.A., Rose, J.K.C. and Roeder, A.H.K.^ (2017) CUTIN

SYNTHASE2 maintains progressively developing cuticular ridges in Arabidopsis sepals. Molecular Plant doi: 10.1016/j.molp.2017.01.002.

Hong, L. and Roeder, A.H.K.^ (2017) Plant Development: Differential Growth Rates in Distinct Zones

Shape an Ancient Plant Form. Dispatch in Current Biology 27, R19-R21. Hong, L.*, Dumond, M.*, Tsugawa, S.*, Sapala, A, Routier-Kierzkowska, A.-L., Zhou, Y., Chen

C., Kiss, A., Zhu, M., Hamant, O., Smith, R.S., Komatsuzaki, T., Li, C.-L., Boudaoud, A^, and Roeder, A.H.K.^ (2016) Variable cell growth yields reproducible organ development through spatiotemporal averaging. Developmental Cell 38, 15-32.

Schwarz, E.M., Roeder, A.H.K.^ (2016) Transcriptomic effects of the cell cycle regulator LGO in

Arabidopsis sepals. Frontiers in Plant Science 7, 1744. doi: 10.3389/fpls.2016.01744 Hervieux, N., Dumond, M., Sapala, A., Routier, A.-L., Kierzkowski, D., Roeder, A.H.K., Smith, R.S.,

Boudaoud, A., Hamant, O.^ (2016) A mechanical feedback restricts sepal growth and shape in Arabidopsis. Current Biology 26, 1019-1028.

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Gillmor, C.S., Roeder, A.H.K., Sieber, P., Somerville, C., Lukowitz, W.^ (2016) A genetic screen for mutations affecting cell division in the Arabidopsis thaliana embryo identifies seven loci required for cytokinesis. PLoS ONE 11, e0146492.

Tauriello, G.*, Meyer H.M.*, Smith, R.S., Koumoutsakos, P., and Roeder, A.H.K.^

(2015) Variability and constancy in cellular growth of Arabidopsis sepals. Plant Physiology 169, 2342-2358.

Barbier de Reuille, P., Routier-Kierzkowska, A.-L., Kierzkowski, D., Bassel, G.W.,

Schüpbach, T., Tauriello, G., Bajpai, N., Strauss, S., Weber, A., Kiss, A., Burian, A., Hofhuis, H., Sapala, A., Lipowczan, M., Heimlicher, M.B., Robinson, S., Bayer, E.M., Basler, K., Koumoutsakos, P., Roeder, A.H.K., Aegerter-Wilmsen, T., Nakayama, N., Tsiantis, M., Hay, A., Kwiatkowska, D., Xenarios, I., Kuhlemeier, C., Smith, R.S.^ (2015) MorphoGraphX: A framework for quantifying morphogenesis. eLife 4, e05864.

Robinson, D.O. and Roeder, A.H.K.^ (2015) Themes and variations in cell type patterning in the plant

epidermis. Current Opinion in Genetics and Development 32, 55–65. Qu, X., Chatty, P.R., and Roeder, A.H.K.^ (2014) Endomembrane trafficking protein SEC24A regulates

cell size patterning in Arabidopsis. Plant Physiology 166, 1877–1890. Meyer, H.M. and Roeder, A.H.K.^ (2014) Stochasticity in plant cellular growth and patterning. Frontiers

in Plant Science: Plant Evolution and Development 5, 420. Recognition: Invited as part of the Stochasticity in Plant Developmental Processes research topic. Qu, X. and Roeder, A.H.K. ^ (2012) Plant cell size control: all things considered. Section of Forum

Article: Marshall, W.F., Young, K.D., Swaffer, M., Wood, E., Nurse, P., Kimura, A., Frankel, J., Wallingford, J., Walbot, V., Qu, X., and Roeder, A.H.K. What determines cell size? BMC Biology 10, 101.

Recognition: Highly Accessed Roeder, A.H.K.^ (2012) When and where plant cells divide: a perspective from

computational modeling. Current Opinion in Plant Biology 15, 638–644. Roeder, A.H.K.,^ Cunha, A., Ohno, C.K., and Meyerowitz, E.M. (2012) Cell cycle

regulates cell type in the Arabidopsis sepal. Development 139, 4416-4427. Roeder A.H.K.,^ Cunha, A., Burl, M.C., and Meyerowitz, E.M. (2012) A computational image analysis

glossary for biologists. Development 139, 3071-3080. Recognition: Second most read article in Development for the month of August 2012. Cunha, A., Tarr, P.T., Roeder, A.H.K., Altinok, A., Mjolsness, E., and Meyerowitz, E.M. (2012)

Computational analysis of live cell images of the Arabidopsis thaliana plant. Methods in Cell Biology 110, 285-323.

Ripoll, J.J., Roeder, A.H.K., Ditta, G.S., and Yanofsky, M.F (2011) An unsuspected role for the floral

homeotic gene APETALA2 during Arabidopsis fruit development. Development 138, 5167-5176. Roeder, A.H.K., Tarr, P.T., Tobin, C., Zhang, X., Chickarmane, V. Cunha, A. and Meyerowitz, E.M.

(2011) Computational morphodynamics: integrating development over space and time. Nature Reviews Molecular Cell Biology 12, 265-273.

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Jun, J., Fiume, E., Roeder, A.H.K., Meng, L., Sharma, V.K., Osmont, K.S., Baker, C., Ha, C.M.,

Meyerowitz, E.M., Feldman, L.J. and Fletcher, J.C. (2010) Comprehensive analysis of CLE polypeptide signaling gene expression and over-expression activity in Arabidopsis. Plant Physiology 154, 1721-1736.

Roeder, A.H.K.*, Chickarmane, V.*, Cunha, A., Obara, B., Manjunath, B.S., and

Meyerowitz, E.M. (2010). Variability in the control of cell division underlies sepal epidermal patterning in Arabidopsis thaliana. PLoS Biology 8, e1000367.

Chickarmane, V., Roeder, A.H.K., Tarr, P.T., Cunha, A., Tobin, C., and Meyerowitz, E.M. (2010).

Computational morphodynamics: a modeling framework to understand plant growth. Annual Review of Plant Biology 61, 65–87.

Roeder, A.H.K. (2010) Sepals. In: Encyclopedia of Life Sciences (ELS). John Wiley & Sons, Ltd:

Chichester. DOI: 10.1002/9780470015902.a0002064.pub2 Shapiro, B.E., Jönsson, H., Sahlin, P., Heisler, M. Roeder, A., Burl, M., Meyerowitz, E.M., and Mjolsness,

E.D. Tessellations and Pattern Formation in Plant Growth and Development in Tessellations in the Sciences: Virtues, Techniques and Applications of Geometric Tilings Springer Verlag.

Harrison, C.J., Roeder, A.H.K., Meyerowitz, E.M., and Langdale, J.A. (2009). Local cues and asymmetric

cell divisions underpin body plan transitions in the moss Physcomitrella patens. Current Biology 19, 461-471.

Roeder, A.H.K. and Yanofsky, M.F. (2005). Fruit development in Arabidopsis. The Arabidopsis Book,

eds. C.R. Somerville and E.M. Meyerowitz, American Society of Plant Biologists, Rockville, MD. Yu, Q., Moore, P.H., Albert, H.H., Roeder, A.H.K. and Ming, R. (2005). Cloning and characterization of a

FLORICULA/LEAFY ortholog, PFL, in polygamous papaya. Cell Research 15, 576-584. Lukowitz, W., Roeder, A., Parameter, D., and Somerville, C. (2004). A MAPKK kinase gene regulates

extra-embryonic cell-fate in Arabidopsis. Cell 116, 109-119. Liljegren, S.J.*, Roeder, A.H.K.*, Kempin, S.A., Gremski, K., Østergaard, L., Guimil, S., Reyes, D. K., and

Yanofsky, M.F. (2004). Control of fruit patterning in Arabidopsis by INDEHISCENT. Cell 116, 843-853.

Roeder, A.H.K., Ferrándiz, C., and Yanofsky, M.F. (2003). The role of the REPLUMLESS homeodomain

protein in patterning the Arabidopsis fruit. Current Biology 13, 1630-1635. Roeder, A.H.K., and Yanofsky, M.F. (2001). Unraveling the mystery of double flowers. Developmental

Cell 1, 4-6. Conference Proceedings Conference proceedings are a type of publication common in computational fields. They are peer-reviewed and can be as prestigious as journal publications. There is no equivalent in biology. Fick, R.H.J., Fedorov, D., Roeder, A.H.K., Manjunath, B.S. (2013) Simultaneous cell tracking and image

alignment in 3D CLSM imagery of growing Arabidopsis thaliana sepals. IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro. San Francisco, CA; April 7-11, 2013.

Cunha, A., Roeder, A., and Meyerowitz, E. Segmenting the sepal and shoot apical meristem of

Arabidopsis thaliana. 32nd Annual International Conference of the IEEE Engineering in

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Medicine and Biology Society (EMBC'10). Buenos Aires, Argentina; September 1-4, 2010. Burl, M., Roeder, A., Ohno, C., Mjolsness, E., Meyerowitz, E. (2006). Automatic extraction of 3D nuclear

bounding surfaces from CLSM imagery of developing Arabidopsis flowers, 2006 Workshop on Multiscale Biological Imaging, Data Mining and Bioinformatics. University of California, Santa Barbara, CA, USA; Sept 7-8, 2006.

http://www.bioimageinformatics.org/2006/proceedings/talks/burl_bioimageinformatics2006.pdf Research Funding: PI: CAREER: Initiation of cell size patterning in Arabidopsis National Science Foundation IOS-1553030 Total award: $988,503 Start date: 3/1/2016; End date: 2/28/2021, expect to extend with no-cost extension. PI: Mechanisms of robustness in organogenesis National Institutes of Health R01GM134037 Total direct costs awarded: $800,000 Start date: 4/01/2020; End date: 3/31/2024 Pending Research Funding: Co-PI: Improving Broccoli By Understanding The Determination Of Organ Shape Agriculture and Food Research Initiative (AFRI) Co-PI Thomas Bjorkman Total funds requested $500,000 Proposed start date: 8/1/2020 end date 07/31/2024 Funding for larger projects: Faculty Participant: NRT-ROL&HDR: Team training to develop new hardware and software applications for digital plant science: predicting genotype to phenotype relationships across multiple scales National Science Foundation, interdisciplinary graduate training grant Start date: 9/1/2019; End date: 8/31/2024 Faculty Participant: NSF Planning Grant: Engineering Research Center for the Engineering of Emergent Biocomplexity (ERC-EEB) National Science Foundation planning grant to apply for an Engineering Research Center Start date: 9/1/2019; End date: 8/30/2020 Previous Research Funding: PI: A synthetic biology organ size sensor Schwartz Research Fund Award: $15,000 Start date: 3/1/2019; End date 2/29/2020 PI: Feedback of cell cycle on cell type in Arabidopsis organogenesis National Science Foundation IOS-1256733 Total award: $517,000 Start date: 1/16/2013; End date: 12/31/2016 (no-cost extension) Co-PI: From stochastic cell behavior to reproducible shapes: the coordination behind morphogenesis Human Frontiers in Science Program RGP0008/2013 Total collaborative budget: $1,350,000 September 2013-September 2017 (no-cost extension) PI: Role of endoreduplication in promoting cell type specific gene expression in the Arabidopsis sepal.

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2015 PCCW Affinito-Stewart Grant internal Cornell Grant; Total Funding: $6,245 Start date: July 1, 2015; End date: June 30, 2016 Recent applications not awarded Subcontract: Physics Frontier Center: Center for Study of Physical Principles of Development Source of support: UCSB / NSF Total Award Amount: $130,964 Start date: 10/01/2020; End date: 09/30/2022 Talks: May 2020 “Robustness of organ size in flowers” Saclay Plant Sciences Network virtual seminar,

France. Invited seminar. Feb. 2020 “A novel developmental patterning mechanism based on the fluctuations of a

transcription factor” Kansas State University. Invited seminar. Jan. 2020 “Patterns of cell size (and ploidy): How variable cells make reproducible organs in

Arabidopsis” John Innes Center, Norwich, UK. Invited by the students. Dec. 2019 “How variable cells make reproducible organs in Arabidopsis” University of Wisconsin,

Maddison. Nov. 2019 “How do plant organs reach the right size and shape?” Harvard University, Cambridge.

Invited by the postdocs. Oct. 2019 “The role of mechanics in organ size and shape robustness of Arabidopsis” National

Mechanobiology Symposium 2019 organized by the Center for Engineering MechanoBiology at Washington University in St. Louis. Invited speaker.

Oct. 2019 “Utilizing fluctuations in a transcription factor to create cell size patterns.” University of Delaware Bioinformatics invited seminar.

Aug. 2019 “Robustness of organ size in Arabidopsis.” Morphogenesis in Animals and Plants: Search for Principles, Kavli Institute for Theoretical Physics, UC Santa Barbara.

June 2019 “How fluctuations in a transcription factor initiate cell patterning in Arabidopsis sepals.” Gordon Research Conference: Developmental Biology, Mount Holyoke College, Massachusetts. Invited speaker

May 2019 “Robustness of organ size (in flowers).” Mid Atlantic Society for Developmental Biology Meeting. Penn State, Pennsylvania. Invited speaker

April 2019 “Timing is everything: robustness in Arabidopsis floral organ size.” Joint Spring meeting of the British Society for Cell Biology and the British Society for Developmental Biology 2019, University of Warwick, England. Invited speaker

April 2019 “Timing is critical to plant organ size regulation.” Laboratoire Reproduction Et Developpment Des Plants, ENS Lyon, France. Invited seminar

Feb 2019 “Timing is everything: robustness in flower size.” 1st Decade of Science in the Weill Institute symposium, Cornell University, New York.

Oct 2018 “Fluctuations of ATML1 control the pattern of endoreduplication.” Polyploidy in Organ Development, Repair, and Disease. MDI Biological Laboratory, Bar Harbor, Maine. Invited speaker

Sept 2018 “Three stories about why I love being a plant biologist,” public lecture and “How variable cells make reproducible organs in Arabidopsis,” technical talk for the Adolph E. Waller Memorial Lecture at Ohio State University. Invited by the graduate students.

Sept 2018 “How variable cells make reproducible organs in Arabidopsis.” Sainsbury Laboratory Symposium on The Coordination of Development, Cambridge, England Invited speaker

May 2018 “How variable cells make reproducible organs in Arabidopsis.” Midwest Plant Cell Dynamics meeting, University of Wisconsin, Maddison. Invited keynote speaker

April 2018 “How variable cells make reproducible organs in Arabidopsis.” Northeast Society for Developmental Biology, Marine Biological Laboratory, Woods Hole, MA. Invited speaker

Jan. 2018 “How floral organs are made with the same size and shape: the role of primordium initiation.” Department of Botany and Plant Biology, Purdue University. Invited seminar

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Dec. 2017 “The interface between modeling and plant development experiments from a biologist’s perspective.” BIRS Workshop 17w5164, Mathematics for Developmental Biology, Banff, Canada. Invited speaker

Oct. 2017 “Cell size is determined by the fluctuations of a transcription factor in Arabidopsis sepals.” Molecular Plant Seminar Series at Michigan State University. Invited seminar

Sept. 2017 “How variable cells make reproducible organs in Arabidopsis.” Institute of Molecular Biology, Academia Sinica, Taipei, Taiwan. Invited seminar.

August 2017 “A fluctuation-based mechanism patterns diversity in cell size.” Program in Genetics and Genomics Seminar, Duke University. Invited seminar

August 2017 “A fluctuation based patterning mechanism.” Invited talk at the FASEB Mechanisms of Plant Development meeting, Saxton’s River, VT. Invited speaker

June 2017 “Exploiting random fluctuations to create a pattern of giant cells in the Arabidopsis sepal.” Plant Biology Seminar, UC Davis.

June 2017 “Reaching biological conclusions from RNA-seq: the good, the bad, and the ugly.” Analyzing High Throughput Sequencing Data (ANGUS), UC Davis. Invited speaker

June 2017 “Spatiotemporal averaging of variable cell growth produces regular Arabidopsis sepals.” Invited talk at the 28th International Conference on Arabidopsis Research (ICAR), St. Lois, MO. Invited speaker

April 2017 “A fluctuation based cell patterning mechanism.” Allen Distinguished Microscopy Seminar Series, North Carolina State University. Invited seminar

Dec. 2016 “How variable cells make reproducible organs—a view from the experimentalist’s side.” Interdisciplinary Workshop on Multi-scale Modeling of Complex Systems in Developmental and Plant Biology, UC Riverside. Invited speaker

Aug. 2016 “How variable cells make reproducible Arabidopsis sepals.” Plant Biology Section, School of Integrative Plant Science, Cornell University

July 2016 “Fluctuations of the transcription factor ATML1 control the pattern of endoreduplication versus mitosis in the Arabidopsis sepal epidermis.” International Conference on Arabidopsis Research (ICAR2016) Gyeong Ju, Korea. Invited speaker

July 2016 “The importance of variability in generating regular plant organs.” Seoul National University, Korea.

March 2016 “Precise sepal size arises from variable cellular growth in Arabidopsis.” Invited talk, Plant Reproduction 2016: Frontiers of Sexual Plant Reproduction IV and 24th International Congress on Sexual Plant Reproduction. Tucson, AZ. Invited speaker

Dec. 2015 “The importance of variability in generating regular plant organs.” Seminar University of Tokyo, Tokyo, Japan.

Dec. 2015 “Patterning of endoreduplication in the Arabidopsis sepal epidermis.” Seminar Tokyo Science University, Tokyo, Japan.

Nov. 2015 “The importance of variability in generating regular plant organs.” Plant Biology Seminar series, UCSD. Invited seminar

Sept. 2015 “The importance of variability in generating regular plant organs.” UMass Amherst. Invited seminar.

Aug. 2015 “The importance of cellular variability in generating regular plant organs.” Sainsbury Laboratory Computational Workshop 2015, Cambridge, UK. Invited Speaker

Feb. 2015 “Cell size and organ size in Arabidopsis sepals.” Plant Biology Seminar Series, Penn State, PA. Invited seminar

Sept. 2014 “Reproducible development with cellular variability.” EMBO Interdisciplinary Plant Development Meeting, Sainsbury Institute, Cambridge, UK. Invited speaker

Aug. 2014 “A systems biology approach to understanding the relationship between plant cell size and organ size.” Phytochemical Society of North America 53rd Annual Conference, North Carolina State University. Raleigh, NC. Invited speaker

April 2014 “Giant cells and small cells in Arabidopsis flowers.” Harvard University, Cambridge, MA. Invited seminar

Sept 2013 “Giant cells and small cells in Arabidopsis flowers.” Bard College, NY. Invited seminar Aug. 2013 “Coordination of cell division and cell type in the control of the morphogenesis of the

sepal.” FASEB Mechanisms of Plant Development, Saxton’s River, VT. Invited Speaker

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June 2013 “Plant biology in the next 100 years.” Plant Biology Centennial Celebration, Cornell, Ithaca, NY.

April 2013 “Live imaging and computational modeling show cell cycle regulation can influence cell type in Arabidopsis.” Seminar Series, Worcester Polytechnic Institute, Worchester, MA. Invited seminar

May 2012 “Coordination of cell identity and cell division in the Arabidopsis sepal.” Plant Biology Seminar Series, U. Penn., Philadelphia, PA. Invited seminar

May 2012 “Variability in the timing of cell division underlies organogenesis of the Arabidopsis sepal.” Mid-Atlantic Regional Meeting of the Society for Developmental Biology, Penn State, PA. Invited speaker

Dec 2011 “Coordination of cell identity and cell division in the Arabidopsis sepal.” Molecular Biology and Genetics Department Seminar, Cornell University, Ithaca, NY.

Sept 2011 “Coordination of cell identity and cell division in the Arabidopsis sepal.” Plant Biology Department Seminar Series, Cornell University, Ithaca, NY. July 2011 “Computational morphodynamics reveals the role of cell division in the patterning of the

Arabidopsis sepal.” XVIII International Botanical Congress, Melbourne, Australia. May 2011 “The Meyerowitz lab today: integrating plant development over space and time.” Elliot

Meyerowitz’s 60th Birthday Celebration, Caltech, CA. Aug. 2010 “The epidermal specification pathway regulates the cell size pattern in the Arabidopsis

sepal.” FASEB Summer Research Conference Mechanisms of Plant Development, Saxtons River, VT.

June 2010 “Imaging and modeling reveal the role of variability in the formation of the cell size pattern in the Arabidopsis sepal.” RIKEN, Yokohama, Japan.

July 2009 “Timing of cell division controls the relative cell size pattern in Arabidopsis.” John Innes Center, Norwich, England.

July 2009 “Timing of cell division controls the relative cell size pattern in Arabidopsis.” Oxford University, Oxford, England.

July 2009 “Timing of cell division controls the relative cell size pattern in Arabidopsis.” 20th International Conference on Arabidopsis Research, Edinburgh, Scotland.

June 2009 “Timing of cell division controls the relative cell size pattern in Arabidopsis.” Sainsbury Laboratory Cambridge University Gatsby Advisory Group meeting,

Telluride, CO. Invited speaker June 2009 “Timing of cell division controls the relative cell size pattern in Arabidopsis.” UC Riverside Center for Plant Cell Biology seminar series, Riverside, CA. Invited seminar May 2009 “Timing of cell division controls the relative cell size pattern in Arabidopsis.” Cold Spring Harbor Laboratory, NY. Aug. 2008 “Timing of endoreduplication controls relative cell size.” FASEB Summer Research

Conference Mechanisms of Plant Development, Saxtons River, VT April 2007 “Biological and imaging approaches to understanding plant cell growth.”

Biological Network Modeling Center seminar series, Caltech., CA. Aug. 2004 “Drawing a line in the Arabidopsis fruit: How the valve margin forms at the border

between the valve and the replum.” FASEB Summer Research Conference Mechanisms of Plant Development, Saxtons River, VT.

June 2003 “The REPLUMLESS (RPL) homeodomain protein specifies replum formation during Arabidopsis fruit development.” 14th International Conference on Arabidopsis Research, Madison, WI.

May 2003 “REPLUMLESS keeps SHATTERPROOF in line during Arabidopsis fruit development." San Diego Center for Molecular Agriculture meeting, San Diego, CA.

Service:

2020 NSF virtual site visit panelist.

2019-present “Stochasticity and Robustness in Plant Development” Mini-symposium organizer for ICAR 2021

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2019-present “The cell cycle in plant growth and stress responses” Workshop co-organizer for ICAR 2021

2019-present International Plant Molecular Biology (IPMB) 2021 Advisory Board

2019-present Guest Editor for The Plant Cell

2018 Guest editor for the Current Opinion in Plant Biology issue on Growth and Development published February 2019

2018 Co-organizer of “Polyploidy in organ development, repair, and disease” meeting at the MDI Biological Laboratory, in Bar Harbor, ME with Dr. Don Fox and Dr. Vicki Losick October 13-14, 2018

This meeting brought together researchers working on polyploidy across model systems: fruit fly, worm, plant, fungi, zebrafish, and mammalian models. The meeting topics included the role of polyploidy in organ development, tissue repair and regeneration, cell cycle and chromosome segregation fidelity, size control, and infection and disease. The talks and posters revealed remarkable commonalities across these systems. https://mdibl.org/conference/polyploidy/

2017-present Faculty of 1000

2017-present Scientific Advisory Board for the next North American International Conference on Arabidopsis Research (ICAR) in 2020.

2005-present Member, Society for Development Biology

2014-present Member, American Society of Plant Biologists

Ad hoc reviewer: NSF (panels and single proposals), Science, Developmental Cell, eLife, Current Biology, PLoS Biology, Plant Cell, Nature Plants, Plant Journal, Development, PNAS, Plant Physiology, PLOS Computational Biology, Current Opinion in Plant Biology, Trends in Plant Science, Trends in Genetics, Developmental Biology, Frontiers in Plant Science, BMC Plant Biology, Annals of Botany, Journal of Plant Physiology, Evolution and Development, Biotechniques, Journal of Theoretical Biology, PLoS One, ERA CAPS (European granting agency), BBSRC (UK granting agency), Wiley (book proposal), Austrian Science Foundation (grant), etc.

Cornell Service: Plant Biology Seminar Series organizer (PLBIO7400), Spring 2018-Spring 2020 School of Integrative Plant Science seminar committee, Spring 2018-Spring 2020 Life Science Lecture Series organization committee Fall 2019-present Chair Fall 2020-present Plant Biology Graduate Admissions Committee: 2012-2015, 2016-2018. Faculty Search committees: Cell Biology 2012-2013, Phylodiversity 2016-2017, BTI collaborative cluster

2018-2019, search chair Plant Synthetic Biology 2019-presernt SIPS Faculty Renewal Committee, 2015-2017 Teaching at Cornell: BIOPL 4831 Concepts and Techniques in Plant Molecular Biology. 3 credits, co-taught with Dr. Eric

Richards and Dr. Tom Owens. Fall 2013 PLBIO 4841 Plant Form and Function: Anatomy, Cell Biology, and Development. 3 credits, co-

taught with Dr. Alejandra Gandolfo. Spring 2014 – Spring 2019 BIOPL 7420 Current Papers in Plant Biology: Advanced Microscopy. 1 credit. Fall 2014 PLBIO 4220 Comparative Plant Development: Evo-Devo. 2 credits, co-taught with Dr. Michael

Scanlon. Fall 2016- Fall 2019 BIOMG 7800 MBG Friday Seminar Discussion Class, 1 credit. Spring 2018 PLBIO 4700 Plant Biology Seminar, 1 credit. Both semesters Spring 2018 - present

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Developed a two-day flipped classroom Computational Image Processing Course Module. I have taught this module to first-year plant biology graduate students as part of PLBIO 4841 Plant Form and Function: Anatomy, Cell Biology and Development. This lesson is being disseminated it to the community as a Teaching Tool through Plant Cell (https://plantae.org/blog/new-teaching-tool-computational-image-processing-in-microscopy/). Research mentoring Post-doctoral/research associates supervised Dr. Lilan Hong (faculty at Zhejiang University) 2012-2018 Dr. B. Vijaya Lakshmi Vadde 2018 - present PhD students supervised Xian Qu, PhD (data scientist, Amazon) 2012 - 2015 Heather Meyer, PhD (postdoctoral scholar, Carnegie, Stanford) 2012 - 2016 Dana Robinson, PhD (technical specialist, Clark and Elbing LLP) 2014 - 2018 Mingyuan Zhu 2014 - 2020 Joseph Cammarata (joint with Prof. Michael Scanlon) 2015 - present Kate Harline 2018 - present Frances Clark 2019-present Shuyao Kong 2020-present Master’s students supervised Lila Luna, MS (applying for medical school) 2016 - 2017 Visiting scholars supervised Mathilde Dumond Sept.-Dec. 2013 Dr. Yong Zhou Oct. 2014-April 2015 Dr. Pengtao Wang Nov. 2016-April 2017 Sebastian Moreno Aug. 2017-Dec. 2017 Dr. Xiaogang Liu Jan. 2018-Aug. 2018 Weiwei Chen Sept. 2018-Aug. 2019 Zhongyuan Chang Sept. 2019-present Past Cornell undergraduate student researchers in the Roeder lab Christopher Sonn, Shi Jun “Clint” Ko (PhD at MIT), Prerana Chatty (medical school), Catherine Chen (medical school), Ashley Smith, Madhurima Chowdhury (medical school), Haarika Srinath (medical school), Lingzhen Kong, Xinran (Maggie) Ma (PhD program), Ellen Haines, Yilei Huang, and Youngmoo Kim Current Cornell undergraduate student researchers: Salaiha Mughal, Zahavah Rojer, Xihang Wang Technicians/interns Jessica McGory 2018-2019 Boyce Thompson Institute (BTI)/Cornell Research Experience for Undergraduates (REU) summer interns Chelsea Alvarado (Temple University) Summer 2013 Anna Marks (Scripps College) Summer 2014 Zhou Wang (Wellesley College) Summer 2015 Nicholas Often (Baltimore City Community College) Summer 2016 Stephanie Brocke (Michigan State University) Summer 2017 Halle Welch (University of Maryland, Baltimore County) Summer 2018 Christopher Morales Farfan (Hamline University) Summer 2019

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High school students Haoxiang Hou Summer 2018 Scientific Outreach: Developed and ran a Computational Image Processing outreach workshop for 7th grade girls entitled “What size is a cell?” through the Explore Your Opportunities program at Mount St. Vincent College in the Bronx, New York (https://westchester-ny.aauw.net/activities/explore-your-opportunities/). The girls play a web-based segmentation program game to guide and correct the computer’s guess for the outline of the cell (http://cose.cacr.caltech.edu/). The program compiles cell size measurements. This follows many years of leading hands-on outreach workshops for middle school girls. 2019 Explore Your Opportunities conference at College of Mount Saint Vincent in the Bronx,

workshop leader: “What size is a cell?” introducing 7th grade girls to image processing using a computer game.

2017 Explore Your Opportunities conference at College of Mount Saint Vincent in the Bronx, workshop leader: “What size is a cell?” introducing 7th grade girls to image processing using a computer game.

2016 Explore Your Opportunities conference at College of Mount Saint Vincent in the Bronx, workshop leader: “What size is a cell?” introducing 7th grade girls to image processing using a computer game.

2015 Explore Your Opportunities conference at College of Mount Saint Vincent in the Bronx, workshop leader: “What color is a rose?” introducing 7th grade girls to plant biology through paper chromatography.

2014 BTI Plant Biology Curriculum Development Project (CDP) middle school and high school teacher workshop on Cauliflower DNA

2014 Explore Your Opportunities conference at College of Mount Saint Vincent in the Bronx, workshop leader: “What color is a rose?”

2013 Explore Your Opportunities conference at College of Mount Saint Vincent in the Bronx: Mystery Women, introducing 7th grade girls to women in science.

2012 Careers in Scientific Research workshop, Convent of the Sacred Heart, Greenwich Upper School

2011 Expanding Your Horizons workshop leader: “Cauliflower DNA” 2009 Expanding Your Horizons workshop leader: “Decoding DNA” 2008 Expanding Your Horizons workshop leader: “Can Gene Changes Turn You Into a

Chimpanzee?” 2008 Girl Scouts Camp Mariposa workshop leader: “Plant Biology” 2007 Expanding Your Horizons workshop leader: “Investigating Cauliflower DNA” 2006 Expanding Your Horizons workshop leader: “The quest for the prettiest and the ugliest

flowers” 2006 Sally Ride Science Festival Volunteer 2005 Expanding Your Horizons workshop leader: “Extracting DNA from vegetables using

kitchen ingredients” Boyce Thompson Institute/Cornell Research Experience for Undergraduates (REU) program seminars June 2018 “How variable cells make reproducible organs in Arabidopsis” June 2017 “How a cell becomes a giant” June 2016 “The importance of variability in plant development” June 2015 “Cell size and organ size in Arabidopsis sepals” July 2014 “Giant cells and small cells in Arabidopsis flowers” July 2013 “Coordination of cell identity and cell division in the Arabidopsis sepal”