Upload
joaopedrodearaujo
View
222
Download
4
Embed Size (px)
DESCRIPTION
Atividade de Bioinformatica - Especialização UEM
Citation preview
UNIVERSIDADE ESTADUAL DE MARINGÁ
ESPECIALIZAÇÃO EM BIOTECNOLOGIA
TURMA 5 – 2014
FUNDAMENTOS DE BIOINFORMÁTICA
ATIVIDADE DE FUNDAMENTOS DE BIOINFORMÁTICA
DIEGO IGOR ALVES FERNANDES DE ARAÚJO
MAT. PG 69769
JOÃO PESSOA – PB
AGOSTO / 2015
Atividade 1 de Bioinformática – Prof. Dr. João Pamphile
Utilizando a ferramenta BLASTN do http://www.ncbi.nlm.nih.gov/ identifique os organismos a que pertencem as sequências abaixo:
Sequência-1GGGAACGCGCTCGGCGCACCAGAAACCTTTGTGAACTTATACCTTACTGTTGCCTCGGCGCAGGCCGGCCTCCCTGGAGGCCCCTCTGAGAGGAGGAGCAGCCCGCCGGCGGCCAACTAAACTCTTGTTTCTTAGTGAATCTCTGAGTAAAAAAACATAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCACTGCTTGGTGTTGGGGCACCGCCTGTAAAAGGGCGGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATCTCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAATTTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCA
Phomopsis sp. G11-14 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence
Organismo: Phomopsis sp. G11-14 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Diaporthales; Valsaceae; Phomopsis.
Autores: Rhoden,S.A., Garcia,A., Rubin Filho,C.J., Azevedo,J.L. , Pamphile,J.A.
Sequência-2GGGATATGATGGAACGCGCGTCGGCGCACCAGAAACCTTTGTGAACTTATACCTTACTGTTGCCTCGGCGCAGGCCGGGCCTCCCTGGAGGCCCCTCTGAGAGGAGGAGCAGCCCGCCGGCGGCCAACTAAACTCTTGTTTCTTAGTGAATCTCTGAGTAAAAAAACATAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCACTGCTTGGTGTTGGGGCACCGCCTGTAAAAGGGCGGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATCTCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAATTTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGGAAGGAA
Phomopsis sp. G10-20 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence
Organismo: Phomopsis sp. G10-20 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Diaporthales; Valsaceae; Phomopsis.
Autores: Rhoden,S.A., Garcia,A., Rubin Filho,C.J., Azevedo,J.L., Pamphile,J.A.
Sequência-3GGATGCTGGAACGCGCCTCGGGCGCACCAGAAACCTTTGTGAACTTATACCTTACTGTTGCCTCGGCGCAGGCCGGCCTCCCTGGAGGCCCCTCTGAGAGGAGGAGCAGCCCGCCGGCGGCCAACTAAACTCTTGTTTCTTAGTGAATCTCTGAGTAAAAAAACATAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCACTGCTTGGTGTTGGGGCACCGCCTGTAAAAGGGCGGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATCTCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAATTTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAACATACACTAAAAAA
Phomopsis sp. G9-38 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence
Organismo: Phomopsis sp. G9-38 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Diaporthales; Valsaceae; Phomopsis.
Autores: Rhoden,S.A., Garcia,A., Rubin Filho,C.J., Nakamura,C.V., Pamphile,J.A.
Sequência-4AAGGGACTATTATGAGTTAACAACTCCAAACCTGTGAACATACTACTGTTGCTTCGGCGGGACCGCCCCGGGCGCCTTCGCGGTGCCCCGGAACCAGGCGCCCGCCGGGGACATCAAACTCTTGATTGTTATAGTGGCATTCTCTGAGTAAAACATACAAATAAGTCAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCTGAGCGTCATTTCAACCCTCGCCCCCGGCTTCTGCTGGGAGCGGTGTTGGGGATCGGCCGCCCGTCACTGGGAGGCCGGCCCCGAAATAGAGTGGCGACCACGCCGTGTGCTCCTCTGCGTAGTAGTAAATCACCTCGCAGGCGGACAGCGGTGCGGCCTGCCGTAAAACCCCCAACTCTTTCTGGTTGACCTCAGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAA
Cordyceps memorabilis internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence
Organismo: Cordyceps memorabilis Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Cordycipitaceae; Cordyceps.
Autores: Rhoden,S.A., Garcia,A., Rubin Filho,C.J., Nakamura,C.V., Pamphile,J.A.
Sequência-5
GGGGACTATTGACTGGAACGCAGCGTATCGGCGCACCAGAAACCTTTGTGAACTTATACCTATTGTTGCCTCGCGCGTCAGGCCGGCCTCTTCACTGAGGCCCCCCGCGAGACGGGGAGCAGCCCGCCGGCGGCCAACTAAACTCTTGTTTCTATAGTGAATCTCTGAGTAAAAAACATAAATGAATCAAACTTTCAACAACGGATCTCTTGGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCGGAATTCACGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTTGGTTCCGAGAGGAGCCGGCCCTGGAAATTCCGTTGGCGAAGCTCGCCCAGGACCCCCGAGCGTTAGTAGTTATATCTCCGCTTTGGAAGGGCCTGGCGGTGCCCTGCCGTTAAACCCCAACTCCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCATAAGCGGAAGA
Diaporthe longicolla strain G9-10 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence
Organismo: Diaporthe longicolla Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Diaporthales; Diaporthaceae; Diaporthe.
Autores: Rhoden,S.A., Garcia,A., Rubin Filho,C.J., Nakamura,C.V., Pamphile,J.A.