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Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of cofactors in a highly conserved function -Adenosine(Nucleotide) binding Motifs -Flavin binding motifs -Coenzyme B12 binding/radical catalysis and the TIM Barrel -Heme binding motifs (Recent motifs in biosensing.)

Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

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Page 1: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Cofactor Binding Motifs

-Electron/proton Transport, An evolutionary conservation of keycofactors in a highly conserved function

-Adenosine(Nucleotide) binding Motifs

-Flavin binding motifs

-Coenzyme B12 binding/radical catalysis and the TIM Barrel

-Heme binding motifs (Recent motifs in biosensing.)

Page 2: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Electron Transport,Archaea to Man

Scahfer et al. FEMS 18 p.173-188

Page 3: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)
Page 4: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Electron Transport - Archaea to Man

Page 5: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Electron Transport - Archaea to Man

Page 6: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Electron Transport - Archaea to Man

Page 7: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Electron Transport - Archaea to Man

Page 8: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)
Page 9: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

The Bateman Domain

p. 274

Page 10: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

CBS Domain

Page 11: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

The Bateman Domain (cont.)

Page 12: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

The Bateman Domain (cont.)

Page 13: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

The Bateman Domain (cont.)

Page 14: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

The Bateman Domain (cont.)

Page 15: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

The Bateman Domain (cont.)

Page 16: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

The Bateman Domain (cont.)

Page 17: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

The Bateman Domain (cont.)

Page 18: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

The Bateman Domain (cont.)

Page 19: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Adenosine (Nucleotide) Binding Motifs

Schmitt et al. J. Mol. Bio. 330 p.333-342

Page 20: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

ATP (Nucleotide) Binding Motifs

Page 21: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

ATP (Nucleotide) Binding Motifs

Page 22: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

ATP (Nucleotide) Binding Motifs

Page 23: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)
Page 24: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Dinucleotide Binding Motifs – The Rossman Fold

Page 25: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

The Modified Rossman Fold

Page 26: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

The Modified Rossman Fold

Page 27: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Flavin Binding Motifs

Page 28: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Flavin Binding Domains are Modular

Flavin Domain

Lactase Domain

Page 29: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)
Page 30: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)
Page 31: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Flavin Binding Motifs

Page 32: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)
Page 33: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)
Page 34: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Flavin Binding Motifs

Page 35: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Heme Binding Motifs - Biosensors

Page 36: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Heme Binding Motifs - Biosensors

Page 37: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Heme Binding Motifs - Biosensors

Page 38: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Heme Binding Motifs - Biosensors

Page 39: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Heme Binding Motifs - Biosensors

Page 40: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)
Page 41: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Other Heme Binding Motifs - Three Over ThreeAnd Two Over Two

Biochemistry and Molecular Biology Education 29 (2001) 123–125

Page 42: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Other Heme Binding Motifs - Photoplexin

Page 43: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Other Heme Binding Motifs - Photoplexin

Page 44: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Other Heme Binding Motifs - Photoplexin

Crenell et al. FEMS 191 p.139-144

Page 45: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Other Heme Binding Motifs - Photoplexin

Page 46: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)
Page 47: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Pro2

His77

Mono

Stereo

Fobs-Fcalc Omit map for Pro 1, 2 and the heme group of CooA

Page 48: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)

Femtomolar NO Sensor from Clostridium botulinium

Noiche et al. Science Express (To be published)

Page 49: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)
Page 50: Cofactor Binding Motifs -Electron/proton Transport, An evolutionary conservation of key cofactors in a highly conserved function -Adenosine(Nucleotide)