8
353 The past decade has been incredibly productive for ethylene researchers. Major components in the ethylene signaling pathway in plants have been identified and characterized. The past year’s contributions include the crystallographic analysis of the Arabidopsis ETR1 receiver domain, antisense studies of the tomato ethylene receptor genes LeETR4 and NR, and the cloning and functional characterization of several Arabidopsis EREBP-related transcription activators and repressors, and of an EIN3-ortholog of tobacco. Additional evidence for the interconnection of the ethylene and auxin responses was provided by the cloning and characterization of Arabidopsis NPH4. Finally, the first discovery of ethylene responsiveness in an animal species implied a more universal role for ethylene than previously thought. Addresses Plant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, California 92037, USA Current Opinion in Plant Biology 2000, 3:353–360 1369-5266/00/$ - see front matter © 2000 Elsevier Science Ltd. All rights reserved. Abbreviations ABA abscisic acid aux1 auxin1 AXR1 AUXIN RESISTANT1 CTR1 CONSTITUTIVE TRIPLE RESPONSE1 EIL EIN3-like protein EIN4 ETHYLENE INSENSITIVE4 eir1 ethylene insensitive root1 EREBP ETHYLENE RESPONSE ELEMENT BINDING PROTEIN ERF1 ETHYLENE RESPONSE FACTOR1 ERS1 ETHYLENE RESPONSE SENSOR1 ETR1 ETHYLENE RECEPTOR1 hls1 hookless1 ISR induced systemic resistance MAP mitogen-activated protein nph4 nonphototropic hypocotyl4 NR NEVER RIPE Pst Pseudomonas syringae pv. tomato RAN1 RESPONSIVE TO ANTAGONIST1 SAR systemic acquired resistance TEBS TEIL-binding site TEIL TOBACCO EIN3-LIKE TMV tobacco mosaic virus Introduction Ethylene is an endogenous plant hormone that affects many aspects of growth and development, such as germi- nation, flower and leaf senescence, fruit ripening, leaf abscission, cell-fate determination in the root epidermis, root nodulation, sex determination, programmed cell death, and responsiveness to stress and pathogen attack [1,2]. Elucidation of the mechanism of ethylene perception and signal transduction began with the isolation of mutants that have defective ethylene responses. Arabidopsis seedlings grown for three days in the dark under continuous exposure to ethylene exhibit a phenotype collectively known as the ‘triple response’. This phenotype includes thick and short roots and hypocotyls, and an exaggerated curvature of the apical hook. Screens for mutants that are unable to gener- ate the triple response when treated with ethylene have been used to identify ethylene insensitive mutants. Similarly, plants that exhibit the triple response in the absence of exogenous ethylene have been identified as either ethylene-overproducing or constitutive-signaling mutants. Overall, more than a dozen genes have been implicated in the ethylene-signaling pathway, and their order of action has been tentatively determined using a combination of genetic and molecular approaches (reviewed in [2]). Ethylene is perceived by a family of integral membrane receptors. In Arabidopsis, at least five family members are involved: ETHYLENE RECEPTOR1 (ETR1), ETR2, ETHYLENE INSENSITIVE4 (EIN4), ETHYLENE RESPONSE SENSOR1 (ERS1), and ERS2 [3–6]. Ethylene binds to the receptors via a copper cofactor [7 •• ], and genetic studies suggest that hormone binding inacti- vates the receptors [8,9 •• ]. In the absence of ethylene, the receptors are predicted to be functionally active histidine- kinases that activate a Raf-like serine/threonine kinase, CONSTITUTIVE TRIPLE RESPONSE1 (CTR1), also a negative regulator of the pathway [10]. Genetic studies also predict that EIN2, EIN3, EIN5, and EIN6 [11] are positive regulators of the ethylene response. It is not yet known how the ethylene signal is transduced via these molecules at the biochemical level. EIN2 is a metal-ion transporter-related integral-membrane protein, whose function is not well- understood [12 •• ]. EIN5 and EIN6 are proteins of unknown sequence and function, which are currently under investigation. The nuclear protein EIN3 and its par- alogs, the EIN3-like proteins (EILs), are transcription factors that bind to the promoters of ethylene-response genes such as ETHYLENE RESPONSE FACTOR1 (ERF1) and initiate a transcriptional cascade leading to the regula- tion of ethylene target genes [13,14]. In this review, we describe recent advances in the field of ethylene signal transduction in the context of the previously defined com- ponents of the pathway. The focus is on Arabidopsis as this is the plant in which the majority of signaling components have been identified. Ethylene perception and signal transduction Genetic epistasis studies of Arabidopsis signaling mutants revealed that ETR1, ETR2 and EIN4, along with their homologues ERS1 and ERS2, work upstream of CTR1, whereas EIN2, EIN3, EIN5 and EIN6 work downstream (reviewed in [2]). Detailed analysis of these mutants, as well as the recent cloning and characterization of some of the corresponding genes, now allows us a glimpse of the complex nature of the ethylene signaling pathway in plants. Ethylene signaling: from mutants to molecules Anna N Stepanova and Joseph R Ecker

Ethylene signaling: from mutants to molecules

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353

The past decade has been incredibly productive for ethyleneresearchers. Major components in the ethylene signalingpathway in plants have been identified and characterized. Thepast year’s contributions include the crystallographic analysisof the Arabidopsis ETR1 receiver domain, antisense studiesof the tomato ethylene receptor genes LeETR4 and NR, andthe cloning and functional characterization of severalArabidopsis EREBP-related transcription activators andrepressors, and of an EIN3-ortholog of tobacco. Additionalevidence for the interconnection of the ethylene and auxinresponses was provided by the cloning and characterizationof Arabidopsis NPH4. Finally, the first discovery of ethyleneresponsiveness in an animal species implied a more universalrole for ethylene than previously thought.

AddressesPlant Biology Laboratory, The Salk Institute for Biological Studies,La Jolla, California 92037, USA

Current Opinion in Plant Biology 2000, 3:353–360

1369-5266/00/$ - see front matter© 2000 Elsevier Science Ltd. All rights reserved.

AbbreviationsABA abscisic acid aux1 auxin1AXR1 AUXIN RESISTANT1CTR1 CONSTITUTIVE TRIPLE RESPONSE1EIL EIN3-like proteinEIN4 ETHYLENE INSENSITIVE4eir1 ethylene insensitive root1EREBP ETHYLENE RESPONSE ELEMENT BINDING PROTEINERF1 ETHYLENE RESPONSE FACTOR1ERS1 ETHYLENE RESPONSE SENSOR1ETR1 ETHYLENE RECEPTOR1hls1 hookless1ISR induced systemic resistanceMAP mitogen-activated proteinnph4 nonphototropic hypocotyl4NR NEVER RIPEPst Pseudomonas syringae pv. tomatoRAN1 RESPONSIVE TO ANTAGONIST1SAR systemic acquired resistanceTEBS TEIL-binding siteTEIL TOBACCO EIN3-LIKETMV tobacco mosaic virus

IntroductionEthylene is an endogenous plant hormone that affectsmany aspects of growth and development, such as germi-nation, flower and leaf senescence, fruit ripening, leafabscission, cell-fate determination in the root epidermis,root nodulation, sex determination, programmed cell death,and responsiveness to stress and pathogen attack [1,2].Elucidation of the mechanism of ethylene perception andsignal transduction began with the isolation of mutants thathave defective ethylene responses. Arabidopsis seedlingsgrown for three days in the dark under continuous exposureto ethylene exhibit a phenotype collectively known as the

‘triple response’. This phenotype includes thick and shortroots and hypocotyls, and an exaggerated curvature of theapical hook. Screens for mutants that are unable to gener-ate the triple response when treated with ethylene havebeen used to identify ethylene insensitive mutants.Similarly, plants that exhibit the triple response in theabsence of exogenous ethylene have been identified aseither ethylene-overproducing or constitutive-signalingmutants. Overall, more than a dozen genes have beenimplicated in the ethylene-signaling pathway, and theirorder of action has been tentatively determined using acombination of genetic and molecular approaches(reviewed in [2]).

Ethylene is perceived by a family of integral membranereceptors. In Arabidopsis, at least five family members areinvolved: ETHYLENE RECEPTOR1 (ETR1), ETR2,ETHYLENE INSENSITIVE4 (EIN4), ETHYLENERESPONSE SENSOR1 (ERS1), and ERS2 [3–6].Ethylene binds to the receptors via a copper cofactor [7••],and genetic studies suggest that hormone binding inacti-vates the receptors [8,9••]. In the absence of ethylene, thereceptors are predicted to be functionally active histidine-kinases that activate a Raf-like serine/threonine kinase,CONSTITUTIVE TRIPLE RESPONSE1 (CTR1), also anegative regulator of the pathway [10]. Genetic studies alsopredict that EIN2, EIN3, EIN5, and EIN6 [11] are positiveregulators of the ethylene response. It is not yet known howthe ethylene signal is transduced via these molecules at thebiochemical level. EIN2 is a metal-ion transporter-relatedintegral-membrane protein, whose function is not well-understood [12••]. EIN5 and EIN6 are proteins ofunknown sequence and function, which are currentlyunder investigation. The nuclear protein EIN3 and its par-alogs, the EIN3-like proteins (EILs), are transcriptionfactors that bind to the promoters of ethylene-responsegenes such as ETHYLENE RESPONSE FACTOR1 (ERF1)and initiate a transcriptional cascade leading to the regula-tion of ethylene target genes [13,14]. In this review, wedescribe recent advances in the field of ethylene signaltransduction in the context of the previously defined com-ponents of the pathway. The focus is on Arabidopsis as thisis the plant in which the majority of signaling componentshave been identified.

Ethylene perception and signal transductionGenetic epistasis studies of Arabidopsis signaling mutantsrevealed that ETR1, ETR2 and EIN4, along with theirhomologues ERS1 and ERS2, work upstream of CTR1,whereas EIN2, EIN3, EIN5 and EIN6 work downstream(reviewed in [2]). Detailed analysis of these mutants, aswell as the recent cloning and characterization of some ofthe corresponding genes, now allows us a glimpse of thecomplex nature of the ethylene signaling pathway in plants.

Ethylene signaling: from mutants to moleculesAnna N Stepanova and Joseph R Ecker

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The Arabidopsis ethylene-receptor family is comprised offive membrane proteins (i.e. ETR1, ETR2, EIN4, ERS1,and ERS2) that are similar to the two-component histidine-kinase regulators found in bacteria and fungi [3–6].Two-component systems generally consist of a sensor molecule with a histidine-kinase domain that autophospho-rylates in response to an environmental stimulus, and aresponse regulator with a receiver domain that accepts thephosphate from the histidine residue of the sensor on itsaspartate residue [15]. In ETR1, ETR2, and EIN4, fea-tures of both a sensor and a response-regulator arecombined in the same molecule [3,5,6]. In contrast, ERS1and ERS2 lack the receiver domain, implying that these

molecules either utilize the receiver of ETR1, ETR2 orEIN4, or employ other response regulators [4,6]. In fact,several molecules with homology to bacterial receiver pro-teins are known [16], although there is no evidence yet thatthey are involved in ethylene signal transduction.

The transmembrane-spanning domain of the ethylenereceptors is located in the amino terminus, followed by aGAF domain, and a histidine-kinase domain. In some ofthe receptors (i.e. ETR1, ETR2 and EIN4) a receiverdomain is found in the carboxyl terminus [6]. On the basisof sequence similarities, irrespective of the presence of thereceiver domain, the receptor family can be subdivided into

354 Cell signalling and gene regulation

Figure 1

A model for ethylene signaling in Arabidopsis.(a) Ethylene binds via a copper co-factor toplasma-membrane-embedded hydrophobicpockets formed by the amino termini (N) ofthe ETR1, ETR2, EIN4, ERS1 and ERS2homodimers. Ethylene binding deactivates thereceptor molecules and, in the absence of apositive regulatory signal from the receptors,the CTR1 protein becomes inactive. Furthertransduction of the ethylene signal requiresthe positive regulators EIN2, EIN3, EIN5, andEIN6 that function downstream of CTR1.(b) EIN2 is an integral-membrane protein ofunknown subcellular localization.(c) Downstream of EIN2 is the EIN3 family oftranscription factors, these bind to the EBSelement in the promoter of the ERF1 geneand activate its expression in an ethylene-dependent manner. (d) ERF1, in turn,interacts with the GCC-box of ethylene-response genes and presumably turns them‘on’. Other EREBPs, which function asethylene-regulated transcriptional activators orrepressors, are also likely to work downstreamof the EIN3 protein family. Signal transductionfrom CTR1 may involve a MAPK cascade. Theorder of action of EIN5 and EIN6 is unknown.Modular structures of the cloned signalingcomponents are shown. Gray shadingindicates known protein–protein interactions.‘?’ represents a novel or unknown compound.C, carboxy terminal; DB, DNA binding; G,GAF; HK, histidine kinase; N, amino terminal;R, receiver; STK, serine/threonine kinase andTM, transmembrane. DNA elements: EBS,EIN3-binding site; and GCC, GCC-box.

EIN5EIN6?

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Current Opinion in Plant Biology

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two classes. Members of the first class, ETR1 and ERS1, pos-sess three hydrophobic subdomains in the amino terminus,and a well-conserved histidine-kinase domain in the carboxy-terminal part of the protein. In contrast, members of thesecond class, ETR2, EIN4 and ERS2, possess four stretchesof hydrophobic amino acids, and lack some of the hallmarksof the bacterial histidine kinases [6]. Interestingly, represen-tatives of both classes of ethylene receptors have beenidentified in other plant species, implying that the mecha-nism of ethylene perception is conserved in flowering plants(reviewed in [17]). Functional equivalence of the two classesof receptor molecules is suggested by the antisense studies ofthe tomato NEVER RIPE (NR) (which encodes a class 1member, with no receiver domain) and LeETR4 (whichencodes a class 2 member, with a receiver domain) receptorgenes [18••]. Reduction in the level of LeETR4 mRNA leadsto the enhanced ethylene sensitivity and responsiveness oftomato plants, but not in the lines that also overexpress NR.Similarly, no phenotype is observed in transgenic lines har-boring the NR antisense construct, as the endogenous levelsof LeETR4 mRNA are upregulated in these plants and presumably compensate for the loss of NR [18••].

The conclusion that ETR1 and its homologues are, in fact,ethylene receptors is based on several observations. Inaddition to the similarity of these proteins to two-compo-nent sensors and regulators, dominant etr1 mutants bindless ethylene than do wild-type plants [19]. Heterologousexpression of ETR1 or ERS1 in yeast confers the ability tobind ethylene with high affinity [7••,20]. Moreover, severalmutant versions of ETR1, which result in dominant ethyl-ene insensitivity in plants, have reduced or no ability tobind ethylene when expressed in yeast [20,21•].

Both in yeast and in planta, the ETR1 protein forms mem-brane-associated disulfide-linked homodimers [22], butcovalent linkage of the monomers is not essential for ethyl-ene binding [20]. Binding of ethylene is accomplished by ahydrophobic membrane-localized pocket in the amino-ter-minal part of ETR1 [20,21•] and requires a copper ion as acofactor [7••]. Copper ions are thought to be supplied to thereceptors by RESPONSIVE TO ANTAGONIST1(RAN1), a putative Arabidopsis copper-transporting P-typeATPase homologous to the yeast Ccc2p and humanMenkes/Wilson disease proteins [9••]. Co-suppression ofRAN1 in transgenic lines, as well as a hypomorphic ran1-3allele, results in plants with a constitutive triple-responsephenotype that can be partially rescued by exogenous cop-per application [9••,23•]. Two missense alleles of RAN1, oneharboring a mutation in a predicted phosphatase domain(ran1-1) and the other in the metal-binding domain (ran1-2),are predicted to result in a relaxed or altered ligand speci-ficity. These mutants have a wild-type morphology in airand ethylene but, unlike wild-type plants, also exhibit thetriple response when treated with the receptor antagonisttrans-cyclooctene [9••]. Recent studies of a severe ran1-3allele suggest a more general requirement for RAN1 in plantgrowth and development [23•].

The cytoplasmic receiver domain of ETR1 has beenrecently crystallized [24,25•]. In contrast with earlierresults, which suggested that the membrane-localizedamino-terminal domain of ETR1 is necessary and suffi-cient for ETR1 homodimerization in yeast [22], theE. coli-expressed cytoplasmic carboxyl terminus of ETR1exists in a dimeric form, both in crystals and in solu-tion [25•]. This discrepancy may be explained by possibledifferences in the phosphorylation states of E. coli- versusyeast-expressed ETR1 proteins. Phosphorylation has beenshown to promote the in vivo homodimerization of thereceiver domains of the E. coli proteins NtrC andPhoB [26], and to repress the heterodimerization of theresponse regulator CheY with its cognate histidine-kinaseCheA [27,28]. To date, no in planta phosphorylation/dimer-ization studies have been performed on the receptormolecules, and only the histidine-kinase autophospho-rylation of a yeast-expressed Arabidopsis ETR1histidine-kinase domain has been reported [29].

Analysis of the ETR1 receiver-domain crystals reveals thatthe β-sheet dimer interface is similar to that found in sev-eral bacterial response regulators and is provided by thecarboxyl termini of the monomers. In contrast, the archi-tecture of the predicted active site of the ETR1 receiver isunique [25•]. It remains to be determined whether theETR1 receiver can indeed accept a phosphate from thehistidine-kinase of the sensor domain, and if it does, whatthe next component of the phosphorelay is. One likely can-didate is the Raf-like kinase CTR1. This protein is capableof interacting with the cytoplasmic portions of ETR1 andERS1 both in vitro and in yeast cells [30]. Null mutationsin the CTR1 gene result in a constitutive triple-responsephenotype, indicating that CTR1 is a negative regulator ofthe ethylene signaling pathway [10]. Unlike the ctr1mutant, null receptor mutants do not display ethylene phe-notypes [8]. The functional redundancy of the receptors is,however, unmasked in the triple and quadruple receptormutants which possess a strong ctr1-like morphology [8]. Intomato, down-regulation of just one of the five knownreceptor genes, LeETR4, leads to enhanced ethyleneresponsiveness [18••]. These results unambiguously showthat the receptors function as negative regulators of ethyl-ene signaling in a variety of plants. The dominant nature ofthe ethylene-insensitive receptor mutations may beexplained by one of several possibilities [21•]. Constitutiveactivation of these proteins may be caused by either theirabolished/reduced ability to bind ethylene (as shown foretr1-1, etr1-3 and etr1-4) or the constitutive activation of thekinase or receiver domain, such that they are no longercapable of responding to the negative regulatory signal ofethylene binding (as predicted for etr1-2) [21•].

CTR1, which has been shown genetically to functiondownstream of the receptors, is homologous to the Raffamily of serine/threonine protein kinases [10]. Consistentwith the role of Raf kinases in mammals, CTR1 may be amitogen-activated protein (MAP) kinase kinase kinase

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(MAPKKK), and the repression of ethylene signaling mayoccur via a MAP kinase kinase (MAPKK) and a MAPkinase (MAPK). Although this is certainly a possibility, anda number of MAPKKs and MAPKs have been identified inplants [2], no biochemical evidence currently exists toprove that a MAPK cascade plays a role in ethylene signaltransduction. Identification of knockout mutations in thegenes encoding these kinases should resolve this issue, butto date, no direct biochemical connection has been madebetween CTR1 and the downstream positive regulators ofethylene signaling EIN2, EIN3, EIN5, EIN6, and ERF1.

EIN2 encodes a novel integral membrane protein withsequence similarity to a mammalian family of NRAMPmetal-ion transporters [12••]. This homology is limited tothe transmembrane amino-terminal part of the protein.The extended carboxyl terminus is novel, with the excep-tion of a coiled-coil motif that has been implicated inprotein–protein interactions in other organisms [12••]. Thefunction of EIN2 in ethylene signaling is not understood.By analogy with the NRAMP proteins, the transmembraneportion of EIN2 has been hypothesized to function as atransporter of divalent cations [12••]. To date, however, nometal-binding or metal-transporting properties of EIN2have been observed. Both the amino-terminal and the car-boxy-terminal domains of EIN2 are essential for thefunction of this protein: truncated versions of EIN2 areunable to complement the ethylene insensitivity of the ein2mutants [12••]. Interestingly, overexpression of the car-boxy-terminal part of EIN2 in the ein2 mutant backgroundtriggers the partial activation of ethylene responses andrestores the ability of the mutant to respond to paraquat andjasmonic acid, but not to ethylene [12••]. These results sug-gest that the amino-terminal part of EIN2 is required forsensing the ethylene signal from the upstream signalingmolecules, whereas the carboxy-terminal part is necessaryand sufficient for transducing this signal to the downstreamcomponents of the ethylene pathway.

Nuclear eventsGenetic data suggest that EIN3 acts downstream ofEIN2 [12••,13]. EIN3 is a novel nuclear-localized proteinwith DNA-binding properties [13,14]. It is thought to serveas a transcription factor that, in response to the ethylenesignal, binds to specific sequences in the promoters of tar-get genes and activates their transcription [14]. To date, theethylene-inducible gene ERF1 is the only known directtarget of Arabidopsis EIN3. EIN3 dimers interact with aunique imperfect palindromic repeat element in the pro-moter of ERF1 [14]. Homodimers of two EIN3 paralogs,EIL1 and EIL2, are also capable of binding to this DNAsequence in vitro [14], but no heterodimerization betweenthese proteins and EIN3 has been reported.

EIN3-like transcription factors are not unique toArabidopsis. Recently an ortholog of EIN3/EIL has beencloned from tobacco and has been implicated in ethylenesignaling by overexpression studies in Arabidopsis [31••].

TOBACCO EIN3-LIKE (TEIL) protein is 92% identicalto EIN3 in the deduced DNA-binding domain, suggestingthat these proteins may bind to the same DNA sequence[31••]. A random site-selection approach using an E. coli-expressed TEIL protein yielded a non-palindromicsequence TEIL-binding site (TEBS) that is very similar tothe partial EIN3-binding site from the ERF1 promoter.Importantly, this element was shown to be sufficient for theTEIL-mediated transcriptional activation of a TEBS-drivenreporter [31••], providing additional evidence that EIN3-related proteins are indeed activators of transcription.

The immediate target of Arabidopsis EIN3, ERF1,encodes a protein that belongs to the ETHYLENERESPONSE ELEMENT BINDING PROTEIN(EREBP) family of DNA-binding proteins and that iscapable of binding to the GCC-box [14]. The GCC-box isa cis-element found in the promoters of several pathogen-related genes, many of which are ethylene responsive.ERF1 is thought to function as a transcription factor, thusimplying that a transcriptional cascade is involved in eth-ylene signaling. ERF1, like EIN3, is a positive regulatorof ethylene signaling. In fact, overexpression of ERF1leads to the constitutive activation of many ethyleneresponses. The triple response of ERF1-overexpressingplants is, however, incomplete, suggesting that other fac-tors may be required for a full response [14]. Indeed, alarge number of EREBP genes exists in Arabidopsis andother species [32], but the expression of only a fraction ofthem is regulated by ethylene [33–35,36••,37••]. In tomato,the product of an ethylene-inducible EREBP, PTI4, can bephosphorylated by the serine/threonine kinase PTO, andthe resulting phosphorylated version of PTI4 has a greateraffinity for the GCC-box than does unphosphorylatedPTI4 [36••]. Consistent with this observation, the con-comitant overexpression of PTO and PTI4 in tomato leadsto the induction of pathogenesis-related (PR) genes thathave a GCC-box in their promoters [36••].

Not all ethylene-responsive EREBPs encode transcrip-tional activators: some encode repressors of transcription[37••]. Given the myriad of responses to ethylene, itseems logical to expect that some ethylene-related phe-notypes result from both the activation of some genes andrepression of others. Furthermore, a number of ethylene-responsive genes possess neither the EIN3-bindingelement nor the GCC-box in their promoters. This obser-vation indicates that transcription factors that areunrelated to either EIN3 or ERF1, and which have a dif-ferent binding specificity, may also be involved in thelater steps of ethylene signaling. Identification of thesemolecules will be crucial to complete our understandingof ethylene-mediated gene regulation.

Unraveling of the web of hormone interactions:ethylene and auxinThe cloning of genes identified in genetic screens for plantsaffected in the ‘triple response’ has led to a tremendous

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improvement in our understanding of ethylene signalingprocesses. Although the elucidation of the intersectionbetween the ethylene and other hormone signaling path-ways is in its infancy, recent studies of several auxin mutantsshow promise for unraveling this ‘web’ of interactions.

Mutations in the Arabidopsis gene AUXIN RESISTANT1(AXR1) are characterized not only by auxin insensitivity,but also by reduced sensitivity to ethylene in seedlingroots and apical hooks [38–40]. Cloning of AXR1 revealedsequence similarity to the ubiquitin-activating enzymeE1 [41], and recent genetic and biochemical findings sug-gest that AXR1 may indeed be involved inubiquitin-mediated protein degradation [42,43]. Theauxin mutants ethylene insensitive root1 (eir1) and auxin1(aux1) are selectively resistant to ethylene in the seedlingroot [11,44]. AUX1 and EIR1 encode proteins withhomologies to plant and fungal amino-acid permeases, andbacterial transporters. They are thought to function inpolar auxin transport as influx and efflux carriers, respec-tively [45,46•,47–50]. hookless1 (hls1) mutants are deficientin the formation of the apical hook both in air and in eth-ylene because of an inability to undergo differential cellelongation in that part of the seedling [40,51]. The HLS1gene possesses a GCC-box in its promoter and is ethyleneinducible [40], implicating the EREBP family of transcrip-tion factors in its regulation. HLS1 encodes atransacetylase-like molecule [40] whose biochemical func-tion has yet to be demonstrated. Interestingly, thenonphototropic hypocotyl4 (nph4) mutant is impaired inauxin-induced hypocotyl bending, but this defect can befunctionally complemented by the exogenous applicationof ethylene [52•]. The NPH4 gene product, ARF7, belongsto the family of auxin-response element DNA-bindingproteins. Thus, in the nph4 mutant, ethylene may enhanceauxin responsiveness by stimulating either the activity orthe sensitivity of a redundant ARF system [52•].

Ethylene and disease resistanceEthylene gas is released upon pathogen infection and isthought to be a part of the plant defense mechanismagainst the spread of pathogens. In the past year, severalstudies have demonstrated that a functional ethylene sig-naling pathway is required for resistance against some, butnot all, pathogens. EIN2 was shown to be essential forpathogen-mediated systemic induction of the basic chitinasePR-3 and a hevein-like gene PR-4 in Arabidopsis upon infec-tion with the fungus Alternaria brassicicola [53•]. Localinduction of the HEL, CHIB and PDF1.2 genes by a cul-ture filtrate from the virulent Gram-negative bacteriumErwinia carotovora subsp. carotovora was also severelyreduced in the ein2-1 and etr1-1 mutants [54•].Furthermore, ein2-1 plants exhibited greater susceptibilityto infection by E. carotovora subsp. carotovora [54•] and thefungus Botrytis cinerea, but not to infection by avirulentstrains of the fungi A. brassicicola and Peronospora parasit-ica [53•]. Systemic acquired resistance (SAR) to a virulentbacterial strain of Pseudomonas syringae pv. tomato (Pst)

following preinoculation with an avirulent strain of Pst wasunaffected in all of the ethylene-insensitive mutants tested(i.e. etr1-1, ein2-1, ein3-1, ein4-1, ein5-1, and ein6) [55•].Similarly, the etr1-1 and etr1-3 mutants exhibited a normalSAR response to P. parasitica infection upon pretreatmentwith the product of the hrpN gene of Erwinia amylovora[56•]. In contrast, induced systemic resistance (ISR)against virulent Pst upon preliminary root colonization withthe nonpathogenic rhizobacterium Pseudomonas fluorescenswas completely abolished in all of the tested ethylene-insensitive mutants (i.e. etr1-1, ein2-1, ein3-1, ein4-1, ein5-1,and ein6) [55•]. Interestingly, under these conditions, noISR was observed in eir1-1 and axr1-12 mutants, which areselectively insensitive to ethylene in the root.Furthermore, in the eir1-1 mutant, the ISR was abolishedonly upon preinoculation of the rhizobacterium in the rootand not in the leaves, suggesting that the ISR requiresintact ethylene signaling at the site of preinoculation [55•].

In tobacco, necrotic lesion formation and induction of basicPR gene expression upon infection with tobacco mosaicvirus (TMV) were also shown to require ethylene [57•].Application of ethylene biosynthesis and action inhibitorssignificantly reduced the severity of lesions and sup-pressed the induction of the pathogen-related genes basicPR1 and P1-II, but not of acidic PR1 [57•]. Ethylene over-production in tobacco resulted in enhanced lesionformation upon TMV inoculation [57•]. Conversely, ethyl-ene insensitivity had no effect on the hypersensitiveresponse or the overall resistance of Arabidopsis plants toturnip crinkle virus infection [58]. In tomato, a virulentbacterial strain of Xanthomonas campestris pv. vesicatoriacaused milder symptoms (i.e. chlorosis and necrosis) in theethylene insensitive Nr mutant and NR-overexpressingplants than in wild-type plants, in spite of similar bacterialtiters [59•]. This increased plant tolerance was attributedto reduced ethylene sensitivity. Both wild-type and ethyl-ene-insensitive Nr and NR-overexpressors were, however,equally resistant to an avirulent strain of X. campestris pv.vesicatoria [59•]. Although the important role of ethylene inplant disease resistance is evident, this hormone seems toaffect separate aspects of plant–pathogen interactions indifferent ways, depending on the host and pathogenspecies, and the conditions tested.

Ethylene response in animalsThe possession of an ethylene signal transduction pathwayis not unique to Arabidopsis. Orthologs of all of the majorsignaling components known to be involved in thisArabidopsis pathway have been identified in several otherplant species (reviewed in [2,17]; JR Ecker, unpublishedresults). Moreover, a bacterial protein that has bothsequence homology to the transmembrane domain ofETR1 and ethylene binding properties has been isolatedfrom Synechocystis sp. [7••]. Recently, an animal species,Suberites domuncula, has been shown for the first time, torespond to ethylene, both physiologically and at the mole-cular level [60••]. In this sponge, ethylene can repress

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starvation-induced apoptotic cell death, and the mRNAlevels of at least two genes, SDERR and CaM kinase II, areupregulated as a result of ethylene exposure [60••].Although it is not yet clear whether this animal can senseand respond to ethylene gas via a conventional ‘plant-spe-cific’ pathway, the fact that gene expression is affectedsuggests the existence of some sort of perception andtransduction pathway for this gas signal.

ConclusionsAlthough the past decade has seen significant advancestoward understanding ethylene action in plants, manyquestions still remain to be answered. In the short term,the functional analysis of known regulatory and signalingcomponents as well as the cloning and characterization ofadditional ethylene pathway genes, such as EIN5 andEIN6, will certainly provide new insight into the mysteriesof ethylene metabolism, perception and transduction. Thenext exciting challenge will be to interconnect the differ-ent hormone signaling pathways in an attempt tounderstand how a plant generates a balanced response to amultitude of growth promoting and inhibitory stimuli.

UpdateNew alleles of ein2 and ctr1 have recently been isolatedin screens for mutants affected in their response toabscisic acid (ABA) [61,62]. The results of the analysisof these well-characterized ethylene mutants in ABA-response assays suggest that both ethylene and ABAaffect the same developmental processes. Whereas theregulation of seed dormancy/germination and root elon-gation by ABA requires intact ethylene signaling, thecontribution of each of the two hormonal pathways isdifferent in these two processes [61,62].

AcknowledgementsWe would like to thank Jose Alonso and Robert McGrath for theircomments on this manuscript. Research in our laboratory is supported bythe National Science Foundation and the US Department of Energy.

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• of special interest•• of outstanding interest

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358 Cell signalling and gene regulation

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