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Evolutionary Genetics LV 25600-01 | Lecture with exercises | 6KP HS2017 http://evolution.unibas.ch/

Evolutionary Genetics · Bioinformatics for Beginners free by Supratim Choudhuri (eBook ISBN 9780124105102) Bioinformatics for Beginners: Genes, Genomes, Molecular Evolution, Databases

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Page 1: Evolutionary Genetics · Bioinformatics for Beginners free by Supratim Choudhuri (eBook ISBN 9780124105102) Bioinformatics for Beginners: Genes, Genomes, Molecular Evolution, Databases

Evolutionary Genetics

LV 25600-01 | Lecture with exercises | 6KP

HS2017

http://evolution.unibas.ch/

Page 2: Evolutionary Genetics · Bioinformatics for Beginners free by Supratim Choudhuri (eBook ISBN 9780124105102) Bioinformatics for Beginners: Genes, Genomes, Molecular Evolution, Databases

Evolutionary Genetics

LV 25600-01 | Lecture with exercises | 6KP

HS2017

BioinformaticsMolecular Ecology

Population Genetics

Quantitative Genetics

Mini-Symposium

Jean-Claude Walser Michael Matschiner Jean-Claude Walser Astrid Böhne You

Weeks 39-41 Weeks 42-44 Weeks 45-47 Weeks 48-50 Weeks 51

Page 3: Evolutionary Genetics · Bioinformatics for Beginners free by Supratim Choudhuri (eBook ISBN 9780124105102) Bioinformatics for Beginners: Genes, Genomes, Molecular Evolution, Databases

Evolutionary Genetics

LV 25600-01 | Lecture with exercises | 6KP

HS2017

http://evolution.unibas.ch/teaching/evol_genetics/index.htm

Page 4: Evolutionary Genetics · Bioinformatics for Beginners free by Supratim Choudhuri (eBook ISBN 9780124105102) Bioinformatics for Beginners: Genes, Genomes, Molecular Evolution, Databases

Evolutionary Genetics

LV 25600-01 | Lecture with exercises | 6KP

HS2017

CHF 69.90A Primer of Ecological Genetics

by Jeffrey K. Conner & Daniel L. Hartl (ISBN-10: 087893202X)

This book covers basic concepts in population and quantitative genetics, including measuring selection on phenotypic traits. The emphasis is on material applicable to field studies of evolution focusing on ecologically important traits. Topics addressed are critical for training students in ecology, evolution, conservation biology, agriculture, forestry and wildlife management. Many texts in this field are too complex and mathematical to allow the average student to grasp the key concepts. A Primer of Ecological Genetics, in contrast, employs mathematics and statistics fully explained, but at a less advanced level as tools to improve understanding of biological principles. Integration of the different chapters of the book shows students how diverse concepts relate to each other.

freeBioinformatics for Beginners

by Supratim Choudhuri (eBook ISBN 9780124105102)

Bioinformatics for Beginners: Genes, Genomes, Molecular Evolution, Databases and Analytical Tools provides a coherent and friendly treatment of bioinformatics for any student or scientist within biology who has not routinely performed bioinformatic analysis. The book discusses the relevant principles needed to understand the theoretical underpinnings of bioinformatic analysis and demonstrates, with examples, targeted analysis using freely available web-based software and publicly available databases. Eschewing non-essential information, the work focuses on principles and hands-on analysis, also pointing to further study options.

Page 5: Evolutionary Genetics · Bioinformatics for Beginners free by Supratim Choudhuri (eBook ISBN 9780124105102) Bioinformatics for Beginners: Genes, Genomes, Molecular Evolution, Databases

Evolutionary Genetics

LV 25600-01 | Lecture with exercises | 6KP

HS2017

http://mobile.unibas.ch/

Page 6: Evolutionary Genetics · Bioinformatics for Beginners free by Supratim Choudhuri (eBook ISBN 9780124105102) Bioinformatics for Beginners: Genes, Genomes, Molecular Evolution, Databases

Evolutionary Genetics

LV 25600-01 | Lecture with exercises | 6KP

HS2017

http://www.projektneptun.ch/

Page 7: Evolutionary Genetics · Bioinformatics for Beginners free by Supratim Choudhuri (eBook ISBN 9780124105102) Bioinformatics for Beginners: Genes, Genomes, Molecular Evolution, Databases

Evolutionary Genetics

LV 25600-01 | Lecture with exercises | 6KP

HS2017

Examination To pass this course and obtain the credit points, participation on all four parts is required and the final grading has to be 4 or higher. The final grading will be determined by assessments during the course (1/3) and a written exam at the end (2/3).

term mark exam mark

Bioinformatics ⅓ ⅔ > module mark

Molecular Evolution ⅓ ⅔ > module mark

Population Genetics ⅓ ⅔ > module mark

Quantitative Genetics ⅓ ⅔ > module mark

module marks∑number of modules

= final grad⎬

Page 8: Evolutionary Genetics · Bioinformatics for Beginners free by Supratim Choudhuri (eBook ISBN 9780124105102) Bioinformatics for Beginners: Genes, Genomes, Molecular Evolution, Databases

Evolutionary Genetics

LV 25600-01 | Lecture with exercises | 6KP

HS2017

Examination To pass this course and obtain the credit points, participation on all four parts is required and the final grading has to be 4 or higher. The final grading will be determined by assessments during the course (1/3) and a written exam at the end (2/3).

• Date of the written exam: tba • Time: tba • Location: tba • Style: open book (textbooks and scripts allowed), calculator required, not

allowed are laptop and cell phones

Page 9: Evolutionary Genetics · Bioinformatics for Beginners free by Supratim Choudhuri (eBook ISBN 9780124105102) Bioinformatics for Beginners: Genes, Genomes, Molecular Evolution, Databases

Evolutionary Genetics

LV 25600-01 | Lecture with exercises | 6KP

HS2017

Get ready - Assignments for next week:

☐ Find the course website, download the pdf document “Bioinformatics for Beginners” by Tramontana and browse through the first two chapters.

☐ Bring your laptop online here at the Zoological Institute.

☐ Install software listed on the next slide.

☐ What do you think you can learn from the first module?

Page 10: Evolutionary Genetics · Bioinformatics for Beginners free by Supratim Choudhuri (eBook ISBN 9780124105102) Bioinformatics for Beginners: Genes, Genomes, Molecular Evolution, Databases

Bioinformatics - Introduction

HS17 | UniBas | JCW 10

To-Do List Windows User

HS15 | UniBas | JCW

‣ Install R ‣ Install RStudio ‣ Unleash Ubuntu for Windows 10 or install Putty ‣ Install text editor ATOM

To-Do List Mac and Linux User‣ Install R ‣ Install RStudio ‣ Find your terminal ‣ Install text editor ATOM

Page 11: Evolutionary Genetics · Bioinformatics for Beginners free by Supratim Choudhuri (eBook ISBN 9780124105102) Bioinformatics for Beginners: Genes, Genomes, Molecular Evolution, Databases

Evolutionary Genetics

LV 25600-01 | Lecture with exercises | 6KP

HS2017