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Introduction to Metabolism
Chapter 6
• Metabolism - sum of organism’s chemical processes.
• Enzymes start processes.• Catabolic pathways release energy
(breaks down complex molecules)• Anabolic pathways consume energy
(builds complicated molecules)
http://images.encarta.msn.com/xrefmedia/aencmed/targets/illus/ilt/T012824A.gif
• Energy - ability to do work.• Kinetic energy - energy of
motion; potential energy - amount of stored energy available.
• Energy can be converted from one form to another.
• Cellular respiration breaks down glucose - energy available to do work.
• Thermodynamics - study of energy transformations.
• 1Closed system (i.e. liquid in a thermos) - isolated from surroundings.
• 2Open system - energy (and often matter) transferred between system and surroundings.
Open system – energy transferred betweensystem and surroundings
http://www.uwsp.edu/geO/faculty/ritter/images/misc/open%20system.jpg
Earth is a closed system – ozone keeps heatfrom escaping
http://www.uwsp.edu/geo/faculty/ritter/images/misc/closed_system.jpg
• 1st law of thermodynamics - energy can be transferred and transformed, but cannot be created or destroyed.
• 2nd law of thermodynamics - every energy transformation must make the universe more disordered.
• Measure of disorder in system - entropy.
• Spontaneous reactions - reactions that occur without outside help.
• Nonspontaneous reactions require outside help.
• Spontaneous processes increase stability of system and nonspontaneous processes decrease stability.
• Spontaneity of system determined by amount of free energy (energy available to do work)
• Free energy (G) in system is related to total energy (H) and its entropy (S) by this relationship:
• G = H - TS, (T is temperature in Kelvin units)
• To be spontaneous, system has to give up energy (decrease in H), give up order (decrease in S), or both.
• System at equilibrium is at maximum stability.
• Exergonic reaction gives off free energy.
• Endergonic reaction requires free energy.
• Cells maintain disequilibrium because they are open; have constant flow of material in/out of cell.
• Cells do 3 types of work.• 1Mechanical work - beating of cilia,
contraction of muscle cells, and movement of chromosomes.
• 2Transport work - pumping substances across membranes against direction of spontaneous movement.
• 3Chemical work - driving endergonic reactions (synthesis of polymers from monomers)
• ATP (adenosine triphosphate) required to do work - type of nucleotide consisting of nitrogenous base adenine, sugar ribose, chain of 3 phosphate groups.
• Phosphate bonds unstable - release energy when broken.
• Phosphate group can be transferred to another molecule (phosphorylation) becomes more reactive molecule.
• ATP recycled by adding phosphate group to ADP.
Inorganic phosphate
• Catalyst - chemical that changes rate of reaction.
• Enzyme - type of catalyst.• Enzymes regulate movement of
molecules through metabolic pathways.
• Chemical reactions involve breaking bonds and making bonds.
Adding water breaks the polymer into monomers
• Activation energy (EA) needed to start reaction.
• Exergonic reactions - activation energy released back to surroundings; more energy released with formation of new bonds.
• Activation energy - amount of energy necessary to push the reactants over energy barrier.
Activation energy
• Difference between free energy of products and free energy of reactants is delta G.
• Enzyme speed reactions by lowering EA.
• Enzymes do not change delta G.
• Substrate - reactant that binds to enzyme.
• When substrate, or substrates, binds to enzyme, enzyme catalyzes conversion of substrate to product.
Enzyme
• Substrate will fit only in enzyme’s active site (area on enzyme that matches up with substrate).
• As substrate binds, enzyme changes shape leading to tighter induced fit, bringing chemical groups in position to catalyze reaction.
• Enzymes – reusable, recycled.• Most metabolic enzymes can catalyze
reactions forward and reverse directions.
• Low substrate concentrations, increase in substrate speeds binding to available active sites.
• Active sites can become saturated, slowing down the reaction.
• As temperature increases, rate of reaction increases.
• At certain temperatures enzyme denatures -stops functioning.
• Enzymes have optimal pH (between pH 6 - 8 for most enzymes)
• Many enzymes require cofactors (nonprotein helpers) to start reaction.
• Organic cofactors, coenzymes, include vitamins or molecules derived from vitamins.
• Inhibitors bind to active site on enzyme; stops reaction from starting.
• lf inhibitor binds to same site as substrate - competitive inhibition.
• If inhibitor binds somewhere other than active site - noncompetitive inhibition.
• Molecules can inhibit enzyme by attaching to allosteric site on enzyme (site that is not active site)
• Regulators can inhibit/activate enzyme.
• Feedback inhibition - increase in end product causes process to stop; decrease starts process.