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Emma Ganley
Chief Editor, PLOS Biology & Data Lead for PLOS
[email protected] @GanleyEmma
August 10, 2016
Data, Metadata, and Data Citation:
Insights from PLOS
PLOS is a non-profit Open Access publisher and advocacy organization with a mission to accelerate
progress in science and medicine by leading a transformation in research communication.
ORCID
ORCID – Connecting Research & Researchers
Jan 2016 PLOS, as part of a coalition of publishers, PLOS signed an Open Letter
committing to follow best practices when collecting, processing, & displaying ORCID iDs.
https://orcid.org/content/requiring-orcid-publication-workflows-open-letter
ORCID API
NB ORCID API enables single sign-on via ORCID button in correspondence
Auto-update
With ORCID integration, Authors and their administrators no longer need to keep profiles updated manually
http://blogs.plos.org/plos/2016/01/author-credit-plos-orcid-update/
CRediT
CRediT Taxonomy
Makes contributions machine-readable and portable
http://casrai.org/CRediTConceptualization | Methodology | Software |Validation |Formal Analysis |Investigation | Resources | Data curation | Writing (original draft) | Writing (reviews) |Visualization | Supervision | Project administration | Funding acquisition
CRediT Taxonomy
Become portable to ORCID record, CV, faculty profile, etc
Open Data
Challenges and OpportunitiesScience 11 February 2011:vol. 331 no. 6018 692-693
CREDIT: M. TWOMBLY/SCIENCE; SOURCE: SCIENCE ONLINE SURVEY
2011 Survey in Science
Data Availability Declines Over Time
ALMOST ALL DATA LOST 10-15 YRS AFTER
PUBLICATION
Source: How Does the Availability of Research Data Change With Time Since Publication?Timothy H. Vines and colleagues, Abstract (podium), Peer Review Congress, 2013
Old to New Policy – March 2014
OLD: Authors should make all relevant data immediately available without restrictions (excl. patient confidentiality)
NEW: Require authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception.
Authors must provide a Data Availability Statement (DAS)describing compliance with PLOS’ policy.
*No change to WHAT data needs to be shared, but the
focus was placed on WHERE it is housed, WHEN it is shared,
and HOW authors provide access for those who want it*
VALUE OF DATA
Replication/Validation;
New analysis;
Better interpretation;
Include in meta-studies;
Facilitate reproducibility;
Scrutiny post- publication;
* $$$* Better return on
research investment.
Data Availability Statement
The DAS is openly available, and machine-readable as part of the PLOS search API
Data Availability Statement
Anecdotes & Interpretation2011-12: 51 papers 12% with data availSince Mar 2014: 20 papers 40% complianceSource: ‘Confusion over publisher’s pioneering open-data rules’ Nature 515, 478 (27 November 2014) doi:10.1038/515478a
‘Mandated data archiving greatly improves access to research data’ T. H Vines et al. Faseb J 27, 1304-1308; Jan 2013
50 fMRI studies in PLOS ONE38 had shared the data12 had not shared the data76% compliance!
An increase in data sharing:- From 12% to 40%- Even up to as much as 76%
Not seeing full compliance but we are seeing massive improvements
Where are the data (PLOS ONE)?
DAS = Data availability statement
• Most common repositories: figshare, Dryad, NCBI Genbank, NCBI GEO, NCBI SRA, Dataverse, EBI, Github, Array Express, RCSB Protein DataBank
• Persistent Identifiers Used.• Increase seen both in repository deposits and in SI files.
Data Repositories & Institutional Repositories
http://journals.plos.org/plosbiology/s/data-availability#loc-recommended-repositories
Biosharing.org collection
Publishers in Data Access & Sharing
Lin J, Strasser C (2014) Recommendations for the Role of Publishers in Access to Data. PLoS Biol 12(10): e1001975. doi:10.1371/journal.pbio.1001975
NSF Funded project:Make Data Count.
To explore and test data-level metrics.
Meeting co-organized by PLOS & CaliforniaDigital Library
Data Citation Implementation PilotImplementation of the Joint Declaration of Data Citation Principles (JDDCP), developed by the FORCE11 Data Citation Implementation Group.
Goal: provide basic coordination between publishers, repositories and identifier / metadata services for early adopters of data citation according to the JDDCP
Funded by the NIH BD2K bioCADDIE to extend on Data Citation Implementation Group
THOR is funded by the European Commission under call H2020-EINFRA-2014-2, project number 654039
30 month project funded by the European Commission under the Horizon 2020 programme. - aim to establish seamless integration between articles, data, and researchers across the research lifecycle. - create a wealth of open resources and foster a sustainable international e-infrastructure. - reduced duplication, economies of scale, richer research services, and opportunities for innovation.
