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for Open Biodiversity Knowledge Management Donat Agosti Plazi OpenData Week, Montpellier, July 12, 2014 Bouchout Declaration

Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

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Lecture explaining the Bouchout Declaration with principles in French

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Page 1: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

for Open Biodiversity Knowledge Management

Donat AgostiPlazi

OpenData Week, Montpellier, July 12, 2014

Bouchout Declaration

Page 2: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Biodiversity CrisisX

New scientific tools

Page 3: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Hardisty, Nature 502, 171 (2013)

BUT: predictive ecology has substantial data needs

Harfoot, BIH2013, Rome, 2013

The big question

What is the future of the biological world?

Imagine if we could:

…Predict community level dynamics of ecosystems atscales from local to global, based on the ecology andbiology of all individual organisms

Page 4: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Decentralized biodiversity infrastructure

Plants3,400 Herbaria worldwide10,000 Associate curators and specialists350,000,000 specimens in collections 180,000,000 specimens digitized2,000,000,000 specimens including animals

Source: gbif.org; http://sciweb.nybg.org/science2/IndexHerbariorum.asp

Page 5: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

One collection’s view of the world

Nationaal Herbarium Nederland collection on GBIF

Source: http://www.gbif.org/dataset/7b33b040-f762-11e1-a439-00145eb45e9a

Page 6: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

200,000,000+ printed pages1,900,000 species described20,000,000+ species treatments 17,000 new species per year

Biodiversity libraries

BUT: The data are hidden

Incomplete digitization Publications are not semantically

enhancedCollections are incompleteData is not linkedMost data are not open

Page 7: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Names as information tags in life sciences

Names

Characteristics

Publications

GenesCollections

Specimens

Distribution

Page 8: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Coordination and Policy Development in Preparation for a European Open Biodiversity Knowledge Management

System

Supported by the European Commission through its FP7 research funding programme

(pro-)iBiosphere

Page 9: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

iBiosphere

Biodiversity Knowledge Management System

Page 10: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Create digital objects + Identifiers and resolvers

+ Open Access+ Legislation

+ Adequate infrastructure+ Sustainable and permanent infrastructure

+ Reliable services for partners in research projects and society

Seamless Global Virtual Research Knowledge Management System(European Open Biodiversity Knowledge Management System)

Biodiversity Knowledge Management System

Page 11: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Why another declaration?

Page 12: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

free of charge online access to EU-funded research…

essential for Europe's ability to enhance its economic performance and improve the capacity to compete through knowledge

http://ec.europa.eu/digital-agenda/en/open-access-scientific-information

Page 13: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Access to digital data sets resulting from federally funded research….

will accelerate scientific breakthroughs and innovation, promote entrepreneurship, and enhance economic growth and job creation.

http://www.whitehouse.gov/blog/2013/02/22/expanding-public-access-results-federally-funded-research

Page 14: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

http://www.nature.com/news/2011/110511/full/news.2011.281.html

800 billion USD have been generated by the human genome project

Page 15: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

After all, there is a Budapest Declaration, a Berlin Declaration, a Bethesda Declaration…

Page 16: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

… but additional messages:Direct access to digital content

Page 17: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

… but additional messages:Direct access to digital contentRe-acting: The biodiversity community is re-acting together to novel environmental, scientific and societal challenges

Page 18: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

… but additional messages:Direct access to digital contentRe-acting: The biodiversity community is re-acting together to novel environ-mental, scientific and societal challengesThird leg: digital content as commitment

Page 19: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

… but additional messages:Direct access to digital contentRe-acting: The biodiversity community is re-acting together to novel environ-mental, scientific and societal challengesThird leg: digital content as commitmentCatalyst for discussions

Page 20: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Bouchout Declaration

Bouchout Declaration

http://bouchoutdeclaration.org

Page 21: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Launched: June 12, 2014

Bouchout Declaration

Page 22: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

signatories

Bouchout Declaration

Page 23: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version
Page 24: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

(75)

(147)

Page 25: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Bouchout Declaration

Page 26: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Bouchout Declaration

But: Gestion Collaborative du Libre Accès aux Connaissances sur la Biodiversité (Open Biodiversity Knowledge Management)

En tant que signataires, nous encourageons une approche globale de la Gestion Collaborative du Libre Accès aux Connaissances sur la Biodiversité, basée sur les principes fondamentaux suivants :

Page 27: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Bouchout Declaration

Open Access

Utilisation libre et ouverte des ressources numériques sur la biodiversité et des services d’accès associés

Page 28: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Bouchout Declaration

LicensesLicences ou clauses de renonciation qui accordent ou permettent à tous les utilisateurs un droit libre, irrévocable et international de copier, utiliser, diffuser, transmettre et rendre public le travail effectué, ainsi que d’exploiter le travail réalisé et de faire des travaux dérivés, sous réserve d’une attribution conforme aux pratiques communautaires, tout en reconnaissant que les fournisseurs pourront développer des produits commerciaux avec des licences plus restrictives.

Page 29: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Bouchout Declaration

Licenses ctd.

Data and research results are not copyrighted and thus no license should be addedIf possible, publications should be created as Open Access works

Page 30: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Bouchout Declaration

Policy

Elaboration de politiques qui favoriseront un accès libre et ouvert aux données sur la biodiversité

Page 31: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Bouchout Declaration

Attribution

Suivi de l’utilisation des identifiants dans les liens et les citations pour garantir que les sources et les fournisseurs de données se voient attribuer la reconnaissance de leurs contributions

Page 32: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Bouchout Declaration

Infrastructure

Mise en place d’infrastructure, normes et protocoles communs pour améliorer l’accès aux données ouvertes et leur utilisation

Page 33: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Bouchout Declaration

Registers

Registres de contenus et de services pour permettre la découverte, l’accès et l’utilisation des données en libre accès

Page 34: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Bouchout Declaration

Persistent Identifiers

Identifiants permanents pour les objets de données et les objets physiques tels que les spécimens, les images et les traitements taxonomiques avec des mécanismes standard pour diriger les utilisateurs directement vers les contenus et les données

Page 35: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Bouchout Declaration

Linked Open Data

Liaison des données utilisant des vocabulaires communs, à la fois au sein et au-delà de la biodiversité, qui permettent la participation à une infrastructure en nuage des Données Liées en Libre Accès

Page 36: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Bouchout Declaration

Development

Dialogue pour préciser le concept, les priorités et les exigences techniques de la Gestion en Libre Accès des Connaissances sur la Biodiversité

Page 37: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Bouchout Declaration

Business

Gestion durable et en Libre Accès des Connaissances sur la Biodiversité attentive aux aspects scientifiques, sociologiques, juridiques et financiers

Page 38: Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

Sign now!

Et [email protected]

bouchoutdeclaration.org