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Crowdsourcing citation suggestions, without needing to ask the crowd Brian Bishop, Co-founder @mochasteak

ForeCite APE (Academic Publishing in Europe) presentation

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Page 1: ForeCite APE (Academic Publishing in Europe) presentation

Crowdsourcing citation suggestions,

without needing to ask the crowd

Brian Bishop, Co-founder

@mochasteak

Page 2: ForeCite APE (Academic Publishing in Europe) presentation

Brian Bishop

Business / Product stuff

Formerly VP of Platform

Development at

Springer, MBA,

14-year scientific

publishing veteran

Pawel Kowalski

Tech stuff

Tech Principal at iterativ

GmbH, full-stack dev,

MSc in Computer

Science, the whole deal

Our Team

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Page 3: ForeCite APE (Academic Publishing in Europe) presentation

Timeline*

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Prototype goes live

November 2014

Today

January 2015

Company registered

August 2014

*timeline not to scale

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We asked 1,044 authors

“What is the most

difficult or frustrating

part of writing a

paper?”

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and this is what they said…

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reading between the tags:

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How painful is this problem?

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836Authors

surveyed

“How long did it take you to gather all the

references / find sources for your paper?”

25%“More than

a week”

35%“More than

a month”

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That’s a lot of

time spent not

doing research

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The average scientific paper has 35 citations

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This is the citation context

Each of those citations is embedded in a sentence

“Both experimental and atomistic simulation results show that when the dimensions of the structures become small then the ‘size effect’ has significant role in the mechanical properties (Ruud et al. 1994).”

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Now go the other way

Paper A

Paper B

Paper C

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We can extract out all the citing contexts from all the papers, and group them according to the document being cited.

Page 12: ForeCite APE (Academic Publishing in Europe) presentation

A database of contexts

A clinical implementation was described first for total mesorectal excision (TME) in the

treatment of rectal cancer [4, 5]. | The circumferential rectal margin (CRM) was

assessed according to the method of Quirke et al. [13], and a margin of < 1 mm was

considered CRM-positive. | Complete mesocolic excision (CME) with central vascular

ligation (CVL), according to the sound principles of total mesorectal excision (TME) [6,

7] for rectal cancer | A standardized routine pathology examination was performed

using the protocol of Quirke et al. [36]. | The surgical specimens were handled

according to standard clinical practice as advocated by Quirke et al. [20] and were

pathologically examined in accordance with the Tumor Node Metastasis staging

system. | For rectal cancer, the specimen was processed using the slicing technique

as described by Quirke et al. 33 | Pathologists were trained to examine the

specimens according to the protocol of Quirke et al. regarding the circumferential

resection margin (CRM), lymph nodes, and dissection plane.12 | Quirke showed a

linear correlation between the development of a local recurrence and an inadequate

resection with positive circumferential margins [14, 22]. | The pathologists were

trained to identify Circumferential Resection Margin (CRM), positive nodes, and lateral

spread of tumor according to the protocol of Quirke et al. [14]. | CRM was measured

according to the guidelines of Quirke et al.[37]. | Since 2002, all pathology

examinations for rectal cancer have been performed according to the guidelines of

Quirke et al. [15]. | Total mesorectal excision (TME) removes the primary tumor with

its surrounding mesorectum as an intact package, preventing residual tumor cells in

the mesorectum from developing into local recurrence.1,2 | Incomplete resection of

the lateral tumor margins is now considered the most important cause of local

recurrence [15–17]. | In a study by Quirke et al. [15], 83% of the patients with a

positive CRM had local tumor

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Document X What everyone said about Document X

Page 13: ForeCite APE (Academic Publishing in Europe) presentation

Example keywords

0 5 10 15 20 25

ana standardized routine pathology examination

tumor node metastasis staging system

preventing residual tumor cells

identify circumferential resection margin

complete mesocolic excision

central vascular ligation

total mesorectal excision

entire regional mesocolon

embryologic tissue planes

circumferential resection margin

radical oncologic resection

lateral tumor margins

standard clinical practice

positive circumferential margins

circumferential rectal margin

local tumor recurrence

pathology examinations

primary tumor

inadequate resection

clinical implementation

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Page 14: ForeCite APE (Academic Publishing in Europe) presentation

Where are we today?

230,000fulltext articles

indexed

3.6 millionarticles with a citation

8 million citing contexts

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Sources

…and you! (If you’re a publisher)

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Now for the

really fun part

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Our Service

PROCESSINGForeCite breaks their text down

into sentences (not a trivial

task) and compares each

sentence against our database

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UPLOADAn author has written (or is

writing) their paper. They

upload it to ForeCite for

analysis

RECOMMENDATIONSFinally, we provide a number of

different recommendation options

(with scoring) along with the

citing context for users to

compare against their text

ALGORITHMThere are many smart ways in

which texts can be compared. So

far we have only scratched the

surface. Hey, it’s early days.

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Example Recommendations

Suggested citations

Sentence with suggested citations

What others wrote when they cited the suggested article, inline for comparison purposes

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What people said about Article X

One of the features of ForeCite is that

you can look up an individual article and

see all of the citing contexts that we

have for this article

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Benefits

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Improves

quality

Saves

time

Enables

discovery

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