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Pipe dreams Arfon Smith

Pipe dreams

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Page 1: Pipe dreams

Pipe dreams Arfon Smith

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Semantic Web

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Sharing data with machines

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Sharing data with machines

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How’s it going?

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Standards

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RDFResource Description Framework

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OWLWeb Ontology Language

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SPARQLSPARQL Protocol and RDF Query Language

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DAML+OILDARPA Agent Markup Language - Ontology Inference Layer

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FOAFFriend of a Friend

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The list goes on...

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Semantic web: Hook together disparate resources

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Biology?

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Hard enough to get any data on the web, let alone another format

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Complicated

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SchemasResource descriptionsDeclarative logicCooridination numbersOntology definitionsDesign by committee

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“it is miraculous enough to get them to work with well formatted HTML”

Ian Mulvany, Nature & Connotea

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Huge overheads

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Provide two resources

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Another way?

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microformats.org

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Why Microformats?

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Build on existing data

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Simple to create

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Simple to consume

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hKit Text::Microformat MOFO

Firefox: Operator, TailsFirefox 3, IE 8, Safari, Opera

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Microformats

hCalendar

hCard

adrgeo

hResume

hReview

hAtom

XFN

XOXO

citation

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Microformats and Biology?

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How do you integrate existing biological web resources?

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hAction, a microformat for biology

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Hook together existing biological web resources

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Demo

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Proof of concept

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Pipes for biology

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"Hey, that's pretty awesome."Chris Wanstrath, MOFO author

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bioformats.org