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help
("an
nota
tion"
)200 nt
feat1 feat2 feat3
help
("an
nota
tion"
)200 nt
feat1 region1
help
("an
nota
tion"
)200 nt
feat1feat2
feat3
feat1feat2
feat3
feat1Bfeat1C
feat1D
help
("an
nota
tion"
)20 kb
BB
BG
BH
BQ
folCaddBlysK
1.42 Mb1.43 Mb1.44 Mb
dnaJrdgB
ubiB
1.38 Mb 1.39 Mb 1.4 Mb 1.41 Mb
addBaccD
10 kb 20 kb 30 kb 40 kb
ubiE hrcA
50 kb 60 kb 70 kb 80 kb
argBcmk
90 kb 100 kb 110 kb 120 kb
trxA
20 kb 30 kb
argBnthpheT
yfeD
90 kb 100 kb 110 kb 120 kb
hrcAargB
80 kb 90 kb
ihfBptsNprfC folC ubiE ptsH
10 kb 20 kb 30 kb 40 kb 50 kb 60 kb 70 kb 80 kb
help
("ap
ply_
colo
r_sc
hem
e")
200 nt
help
("ap
ply_
colo
r_sc
hem
e")
200 nt
help
("ap
ply_
colo
r_sc
hem
e")
200 nt
help
("ap
ply_
colo
r_sc
hem
e")
200 nt
help
("ap
ply_
colo
r_sc
hem
e")
200 nt
help
("ap
ply_
colo
r_sc
hem
e")
200 nt
help
("ar
tem
isC
olor
s")
1.0 1.2 1.4 1.6 1.8 2.0
05
1015
rep(1, nrow(artCol))
artC
ol$n
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
white
dark grey
red
green
blue
cyan
magenta
yellow
pale green
light sky blue
orange
brown
pale pink
light grey
black
mid red
light red
pink
help
("au
to_a
nnot
ate"
)10 nt
− atpCatpB
atpAatp2
− − cda1cda2
cda3vcx23
vcx22vcx21
cde20− gfrU gfrT gfrY gfrX gfrW
atpC−A atp2 cda1−3 vcx23−21 cde20 gfrU−T gfrY−W
Eco00
01
atpC
−A
atp2 Eco
0006
Eco00
07
cda1
−3
vcx2
3−21
cde2
0
Eco00
15
gfrU
−T
gfrY
−W
1 atpC−A atp2 6 7 cda1−3 vcx23−21 cde20 15 gfrU−T gfrY−W
help
("ba
rto"
)500 kb
BB
BG
BH
BQ
help
("ch
rY_s
ubse
g")
20 kb 40 kb 60 kb 80 kb 100 kb 120 kb 140 kb 160 kb 180 kb 200 kb
0 kb 20 kb 40 kb 60 kb 80 kb 100 kb 120 kb 140 kb 160 kb 180 kb 200 kb
help
("ge
ne_t
ypes
")2 kb
help
("ge
ne_t
ypes
")2 kb
arro
wshe
adles
s_ar
rows
block
s
bars
point
s
text
lines sid
e_blo
cks
side_
bars
side_
point
s
side_
text
side_
lines
intro
ns
exon
ssid
e_ex
ons
polA BH00110
arro
wshe
adles
s_ar
rows
block
s
bars
point
s
text
lines sid
e_blo
cks
side_
bars
side_
point
s
side_
text
side_
lines
intro
ns
exon
ssid
e_ex
ons
polA BH00110
help
("ge
ne_t
ypes
")200 nt
*** *** ***
***
help
("ge
noP
lotR
−pa
ckag
e")
200 nt
help
("m
auve
_bbo
ne")
500 kb
B_bacilliformis
B_grahamii
B_henselae
B_quintana
help
("pl
ot_g
ene_
map
")200 nt
help
("pl
ot_g
ene_
map
")200 nt
help
("pl
ot_g
ene_
map
")200 nt
A aaa
B bbb
C ccc
help
("pl
ot_g
ene_
map
")200 nt
A aaa
B bbb
C ccc
help
("pl
ot_g
ene_
map
")200 nt
97
78
A aaa
B bbb
C ccc
help
("pl
ot_g
ene_
map
")200 nt
97
78
A aaa
B bbb
C ccc
help
("pl
ot_g
ene_
map
")200 nt
A aaa
B bbb
C ccc
help
("pl
ot_g
ene_
map
")200 nt
A_aaa
B_bbb
C_ccc
feat1 feat2 feat3
help
("pl
ot_g
ene_
map
")200 nt
A_aaa
B_bbb
C_ccc
feat1 region1
help
("pl
ot_g
ene_
map
")200 nt
A_aaa
B_bbb
C_ccc
0 nt 200 nt 400 nt 600 nt 800 nt 1000 nt 1200 nt
200 nt 400 nt 600 nt 800 nt 1000 nt 1200 nt
2 kb2.2 kb2.4 kb2.6 kb2.8 kb3 kb3.2 kb3.4 kb3.6 kb
help
("pl
ot_g
ene_
map
")200 nt
A_aaa
B_bbb
C_ccc
0 nt 200 nt 400 nt 600 nt 800 nt 1000 nt 1200 nt
200 nt 400 nt 600 nt 800 nt 1000 nt 1200 nt
2 kb 2.2 kb 2.4 kb 2.6 kb 2.8 kb
help
("pl
ot_g
ene_
map
")200 nt
A_aaa
B_bbb
C_ccc
help
("pl
ot_g
ene_
map
")200 nt
A_aaa
B_bbb
C_ccc
help
("pl
ot_g
ene_
map
")
Comparison of A, B and C
200 nt
A_aaa
B_bbb
C_ccc
help
("pl
ot_g
ene_
map
")
Comparison of A, B and C
200 nt
A_aaa
B_bbb
C_ccc
help
("pl
ot_g
ene_
map
")200 nt
Huey
Dewey
Louie
help
("pl
ot_g
ene_
map
")200 nt
Huey
Dewey
Louie
help
("pl
ot_g
ene_
map
")200 nt
A_aaa
B_bbb
C_ccc
help
("pl
ot_g
ene_
map
")200 nt
A_aaa
B_bbb
C_ccc
help
("pl
ot_g
ene_
map
")10 kb
BB
BG
BH
BQ
1.38 Mb 1.39 Mb 1.4 Mb 1.41 Mb 1.42 Mb 1.43 Mb 1.44 Mb
10 kb 20 kb 30 kb 40 kb 50 kb 60 kb 70 kb 80 kb
20 kb 30 kb 40 kb 50 kb 60 kb 70 kb 80 kb 90 kb
10 kb 20 kb 30 kb 40 kb 50 kb 60 kb 70 kb 80 kb
help
("pl
ot_g
ene_
map
")
BB
BG
BH
BQ
1.42 Mb1.44 Mb 1.38 Mb 1.4 Mb
20 kb 40 kb 60 kb 80 kb
help
("pl
ot_g
ene_
map
")10 kb
BB
BG
BH
BQ
1.42 Mb1.43 Mb1.44 Mb 1.38 Mb 1.39 Mb 1.4 Mb 1.41 Mb
10 kb 20 kb 30 kb 40 kb 50 kb 60 kb 70 kb 80 kb 90 kb 100 kb 110 kb 120 kb
20 kb 30 kb 90 kb 100 kb 110 kb 120 kb 80 kb 90 kb
10 kb 20 kb 30 kb 40 kb 50 kb 60 kb 70 kb 80 kb
help
("pl
ot_g
ene_
map
")10 kb
BB
BG
BH
BQ
1.42 Mb1.43 Mb1.44 Mb 1.38 Mb 1.39 Mb 1.4 Mb 1.41 Mb
10 kb 20 kb 30 kb 40 kb 50 kb 60 kb 70 kb 80 kb 90 kb 100 kb 110 kb 120 kb
20 kb 30 kb 90 kb 100 kb 110 kb 120 kb 80 kb 90 kb
10 kb 20 kb 30 kb 40 kb 50 kb 60 kb 70 kb 80 kb
help
("pl
ot_g
ene_
map
")10 kb
BB
BG
BH
BQ
1.42 Mb1.43 Mb1.44 Mb 1.38 Mb 1.39 Mb 1.4 Mb 1.41 Mb
10 kb 20 kb 30 kb 40 kb 50 kb 60 kb 70 kb 80 kb 90 kb 100 kb 110 kb 120 kb
20 kb 30 kb 90 kb 100 kb 110 kb 120 kb 80 kb 90 kb
10 kb 20 kb 30 kb 40 kb 50 kb 60 kb 70 kb 80 kb
help
("pl
ot_g
ene_
map
")
geno R
Plot
help
("re
ad_f
unct
ions
")500 kb
B_bacilliformis
B_grahamii
B_henselae
B_quintana
help
("re
ad_f
unct
ions
")500 kb
B_bacilliformis
B_grahamii
B_henselae
B_quintana
help
("re
ad_f
unct
ions
")500 kb
B bacilliformis
B quintana
B henselae
B grahamii
help
("re
ad_f
unct
ions
")5 kb
BH
BQ
help
("re
vers
e")
500 kb
B_bacilliformis
B_grahamii
B_henselae
B_quintana
help
("re
vers
e")
500 kb
B_bacilliformis
B_grahamii
B_henselae
B_quintana
help
("se
g_pl
ot")
●
●
●
●●
●
●
●
●
●
● ●
●
●
help
("se
g_pl
ot")
help
("se
g_pl
ot")
200 nt
1234
0 nt 200 nt 400 nt 600 nt 800 nt 1000 nt 1200 nt
2
4
6
200 nt 400 nt 600 nt 800 nt 1000 nt 1200 nt
5
6
7
2 kb 2.2 kb 2.4 kb 2.6 kb 2.8 kb 3 kb 3.2 kb 3.4 kb 3.6 kb
help
("se
g_pl
ot")
Random plots for the same segment in 4 Bartonella genomes
20 kb
BB
BG
BH
BQ
250
300
350
1.42 Mb1.43 Mb1.44 Mb 1.38 Mb 1.39 Mb 1.4 Mb 1.41 Mb
100
150
10 kb 20 kb 30 kb 40 kb 50 kb 60 kb 70 kb 80 kb 90 kb 100 kb 110 kb 120 kb
50
100
150
20 kb 30 kb 90 kb 100 kb 110 kb 120 kb 80 kb 90 kb
50
100
150
10 kb 20 kb 30 kb 40 kb 50 kb 60 kb 70 kb 80 kb
help
("th
ree_
gene
s")
200 nt
help
("tr
im")
5 kb
BB
BG
BH
BQ
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