Hadoop and beyond: power tools for data mining

Hadoop and beyond:power tools for data mining

Mark Levy, 13 March 2013Cloud Computing Module

Birkbeck/UCL

Hadoop and beyondOutline:

• the data I work with• Hadoop without Java• Map-Reduce unfriendly algorithms• Hadoop without Map-Reduce• alternatives in the cloud• alternatives on your laptop

NB• all software mentioned is Open Source• won't cover key-value stores• I don't use all of these tools

Last.fm: scrobbling

Last.fm: scrobbling

Last.fm: tagging

Last.fm: personalised radio

Last.fm: recommendations

Last.fm: recommendations

Last.fm datasetsCore datasets:

• 45M users, many active• 60M artists• 100M audio fingerprints• 600M tracks (hmm...)• 19M physical recordings• 3M distinct tags• 2.5M <user,item,tag> taggings per month• 1B <user,time,track> scrobbles per month• full user-track graph has ~50B edges

 (more often work with ~500M edges)

Problem Scenario 1Need Hadoop, don't want Java:

• need to build prototypes, fast• need to do interactive data analysis• want terse, highly readable code

• improve maintainability• improve correctness

Hadoop without Java Some options:• Hive (Yahoo!)• Pig (Yahoo!)• Cascading (ok it's still Java...)• Scalding (Twitter)• Hadoop streaming (various)

not to mention 11 more listed here: http://blog.matthewrathbone.com/2013/01/05/a-quick-guide-to-hadoop-map-reduce-frameworks.html

not to mention 11 more listed here: http://blog.matthewrathbone.com/2013/01/05/a-quick-guide-to-hadoop-map-reduce-frameworks.html

Apache HiveSQL access to data on Hadooppros:

• minimal learning curve• interactive shell• easy to check correctness of code

cons:• can be inefficient• hard to fix when it is

Word count in HiveCREATE TABLE input (line STRING);LOAD DATA LOCAL INPATH '/input' OVERWRITE INTO TABLE input;

SELECT word, COUNT(*) FROM input LATERAL VIEW explode(split(text, ' ')) wTable as word GROUP BY word;

[but would you use SQL to count words?]

Apache PigHigh level scripting language for Hadooppros:

• more primitive operations than Hive (and UDFs)• more flexible than Hive• interactive shell

cons:• harder learning curve than Hive • tempting to write longer programs but no code

modularity beyond functions

Word count in PigA = load '/input';B = foreach A generate flatten(TOKENIZE((chararray)$0)) as word;C = filter B by word matches '\\w+';D = group C by word;E = foreach D generate COUNT(C), group;store E into '/output/wordcount';

[ apply operations to "relations" (tuples) ]

CascadingJava data pipelining for Hadooppros:

• as flexible as Pig• uses a real programming langauge• ideal for longer workflows

cons:• new concepts to learn ("spout","sink","tap",...) • still verbose (full wordcount ex. code > 150 lines)

Word count in CascadingScheme sourceScheme = new TextLine(new Fields("line"));Tap source = new Hfs(sourceScheme, "/input");

Scheme sinkScheme = new TextLine(new Fields("word", "count"));Tap sink = new Hfs(sinkScheme, "/output/wordcount", SinkMode.REPLACE);

Pipe assembly = new Pipe("wordcount");String regex = "(?<!\\pL)(?=\\pL)[^ ]*(?<=\\pL)(?!\\pL)";Function function = new RegexGenerator(new Fields("word"), regex);assembly = new Each(assembly, new Fields("line"), function);assembly = new GroupBy(assembly, new Fields("word"));Aggregator count = new Count(new Fields("count"));assembly = new Every(assembly, count);

Properties properties = new Properties();FlowConnector.setApplicationJarClass(properties, Main.class);FlowConnector flowConnector = new FlowConnector(properties);Flow flow = flowConnector.connect("word-count", source, sink, assembly);flow.complete();

ScaldingScala data pipelining for Hadooppros:

• as flexible as Pig• uses a real programming language• much terser than Java

cons:• community still small (but in use at Twitter)• ???

Word count in Scaldingimport com.twitter.scalding._

class WordCountJob(args : Args) extends Job(args) { TextLine(args("input")) .flatMap('line -> 'word){ line: String => line.split("""\s+""") } .groupBy('word){ _.size } .write(Tsv(args("output")))}

[and a one-liner to run it]

Hadoop streamingMap-reduce in any languagee.g. Dumbo wrapper for Pythonpros:

• use your favourite language for map-reduce• easy to mix local and cloud processing

cons:• limited community• limited functionality beyond map-reduce

Word count in Dumbodef map(key,text):

for word in text.split():yield word,1 # ignore key

def reduce(word,counts):yield word,sum(counts)

import dumbodumbo.run(map,reduce,combiner=reduce)

[and a one-liner to run it]

Problem Scenario 1bNeed Hadoop, don't want Java:

• drive native code in parallelE.g. audio analysis for:

• beat locations, bpm• key estimation• chord sequence estimation• energy• music/speech?• ...

Audio AnalysisProblem:• millions of audio tracks on own dfs• long-running C++ analysis code• depends on numerous libraries• verbose output

Audio AnalysisSolution:• bash + Dumbo Hadoop streaming

Outline:• build C++ code• zip up binary and libs• send zipfile and some track IDs to each machine• extract and run binary in map task with

 subprocess.Popen()

Audio Analysisclass AnalysisMapper: init(): extract(analyzer.tar.bz2,”bin”) map(key,trackID): file = fetch_audio_file(trackID) proc = subprocess.Popen( [“bin/analyzer”,file], stdout = subprocess.PIPE) (out,err) = proc.communicate() yield trackID,out

Problem Scenario 2Map-reduce unfriendly computation:

• iterative algorithms on same data• huge mapper output ("map-increase")• curse of slowest reducer

Graph RecommendationsRandom walk on user-item graph

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Many short routes from U to t ⇒ recommend!

Graph Recommendations

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Graph Recommendationsrandom walk is equivalent to • Label Propagation (Baluja et al., 2008)• belongs to family of algorithms that are easy to code in map-reduce

User-track graph, edge weights = scrobbles:Label Propagation

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 User nodes are labelled with scrobbled tracks: Label Propagation

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(a,0.2)(b,0.4)(c,0.4)

(b,0.5)(d,0.5)

(b,0.2)(d,0.3)(e,0.5)

(a,0.3)(d,0.3)(e,0.4)

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Label Propagation

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1 x (b,0.5),(d,0.5)3 x (b,0.2),(d,0.3),(e,0.5)Þ(b,0.37),d(0.47),(e,0.17)

next iteration e willpropagate to user V

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 Propagate, accumulate, normalise: (a,0.2)(b,0.4)(c,0.4)

(b,0.5)(d,0.5)

(b,0.2)(d,0.3)(e,0.5)

(a,0.3)(d,0.3)(e,0.4)

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Label PropagationAfter some iterations:

•  labels at item nodes = similar items•  new labels at user nodes = recommendations

general approach assuming:• no global state• state at node recomputed from scratch

 from incoming messages on each iteration

other examples:• breadth-first search• page rank

Map-Reduce GraphAlgorithms

Map-Reduce GraphAlgorithmsinputs:

• adjacency lists, state at each nodeoutput:

• updated state at each node

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adjacency list for node U

Label Propagationclass PropagatingMapper: map(nodeID,value): # value holds label-weight pairs # and adjacency list for node labels,adj_list = value for node,weight in adj_list: # send a “stripe” of label-weight # pairs to each neighbouring node msg = [(label,prob*weight) for

label,prob in labels] yield node,msg

Label Propagationclass Reducer: reduce(nodeID,msgs): # accumulate labels = defaultdict(lambda:0) for msg in msgs: for label,w in msg: labels[label] += w # normalise, prune normalise(labels,MAX_LABELS_PER_NODE) yield nodeID,labels

Label PropagationNot map-reduce friendly:

•  send graph over network on every iteration•  huge mapper output:

• mappers soon send MAX_LABELS_PER_NODE updates along every edge

•  some reducers receive huge input:• too slow if reducer streams the data,

OOM otherwise•  NB can't partition real graphs to avoid this

• many natural graphs are scale-free e.g.AltaVista web graph top 1% of nodes adjacentto 53% of edges

Problem Scenario 2bMap-reduce unfriendly computation:

• shared memory

Examples:• almost all machine learning:

• split training examples between machines• all machines need to read/write many shared

parameter values

Hadoop without map-reduceGraph processing• Apache Giraph (Facebook)

Hadoop YARN• Knitting Boar, Iterative Reduce

http://www.cloudera.com/content/cloudera/en/resources/library/hadoopworld/strata-hadoop-world-2012-knitting-boar_slide_deck.htmlhttp://www.cloudera.com/content/cloudera/en/resources/library/hadoopworld/strata-hadoop-world-2012-knitting-boar_slide_deck.html

• ???

Alternatives in the cloudGraph Processing:• GraphLab (CMU)

Task-specific:• Yahoo! LDA

General:• HPCC• Spark (Berkeley)

Spark and SharkIn-memory cluster computingpros:

•  fast!! (Shark is 100x faster than Hive)•  code in Scala or Java or Python•  can run on Hadoop YARN or Apache Mesos•  ideal for iterative algorithms, nearline analytics•  includes a Pregel clone & stream processing

cons:•  hardware requirements???

GraphLabDistributed graph processingpros:

•  vertex-centric programming model•  handles true web-scale graphs•  many toolkits already:

• collaborative filtering, topic modelling, graphical models,machine vision, graph analysis

cons:•  new applications require non-trivial C++ coding

Word count in Sparkval file = spark.textFile(“hdfs://input”) val counts = file.flatMap(line => line.split(”“)) .map(word => (word, 1)) .reduceByKey(_ + _) counts.saveAsTextFile(“hdfs://output/wordcount”)

Logistic regression in Sparkval points = spark.textFile(…).map(parsePoint).cache() var w = Vector.random(D) // current separating plane for (i <- 1 to ITERATIONS) { val gradient = points.map(p => (1 / (1 + exp(-p.y*(w dot p.x))) – 1) * p.y * p.x ).reduce(_ + _) w -= gradient } println(“Final separating plane: “ + w)

[ points remain in memory for all iterations ]

Alternatives on your laptopGraph processing• GraphChi (CMU)

Machine learning• Sophia-ML (Google)• vowpal wabbit (Yahoo!, Microsoft)

GraphChiGraph processing on your laptoppros:

•  still handles graphs with billions of edges•  graph structure can be modified at runtime•  Java/Scala ports under active development•  some toolkits available:

• collaborative filtering, graph analysis

cons:•  existing C++ toolkit code is hard to extend

vowpal wabbitclassification, regression, LDA, bandits, ...pros:

•  handles huge ("terafeature") training datasets•  very fast•  state of the art algorithms•  can run in distributed mode on Hadoop streaming

cons:•  hard-core documentation

Take homesThink before you use Hadoop

•  use your laptop for most problems•  use a graph framework for graph data

Keep your Hadoop code simple •  if you're just querying data use Hive•  if not use a workflow framework

Check out the competition •  Spark and HPCC look impressive

Goodbye Hello

gamboviol@gmail.com@gamboviol

Thanks for listening!