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HAL Id: hal-01925829https://hal.archives-ouvertes.fr/hal-01925829
Submitted on 17 Nov 2018
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Ion channels and properties of large neuronal networks:a computational study of re.nal waves during
developmentBruno Cessac, D Karvouniari, Lionel Gil, Olivier Marre, Serge Picaud
To cite this version:Bruno Cessac, D Karvouniari, Lionel Gil, Olivier Marre, Serge Picaud. Ion channels and propertiesof large neuronal networks: a computational study of re.nal waves during development. Symposiumon Ion channels and Channelopathies - IPMC, Nov 2018, Sophia Antipolis, France. �hal-01925829�
Ionchannelsandproper.esoflargeneuronalnetworks:acomputa.onalstudy
ofre.nalwavesduringdevelopment.
D.Karvouniari,Biovisionteam,INRIAandLJAD,UCAL.Gil,INLN,SophiaAntipolis
O.Marre,InstitutdelaVision,ParisS.Picaud,InstitutdelaVision,Paris
B.Cessac,Biovisionteam,INRIA,SophiaAntipolis
Ionchannelsandproper.esoflargeneuronalnetworks:acomputa.onalstudy
ofre.nalwavesduringdevelopment.
D.Karvouniari,Biovisionteam,INRIAandLJAD,UCAL.Gil,INLN,SophiaAntipolis
O.Marre,InstitutdelaVision,ParisS.Picaud,InstitutdelaVision,Paris
B.Cessac,Biovisionteam,INRIA,SophiaAntipolis
3
The structure of the adult retina
Light
photoreceptorsganglion cells bipolar cells
amacrine cells horizontal cells
Retina’s layered structure
4
The structure of the retina during development
Light XRetina’s layered structure is shaped during development
But How? Retinal waves!
5
Retinal waves
Recordings from the retina
Multi-electrode array(MEA)
(Maccione et al. 2014)
ΜΕΑ recording of the voltage from a P11 mouse retina in the presence of 10 μM bicuculline.
Spontaneous spatio-temporal waves during development Disappear short after birth
when vision is functional
6
StagesofRetinalWavesDuringDevelopment
StageI
StageII
StageIII
• Formationof
retinacircuitry• Chemical
synapsesnotformedyet
• Gapjuction-mediated
• Retinotopicmapping• NicotinicAcetylcholineReceptors
(nAChR)• Disappearwhen
visionisfunctional• Glutamate–
AMPAreceptors
7
StagesofRetinalWavesDuringDevelopment
StageI
StageII
StageIII
• Formationof
retinacircuitry• Chemical
synapsesnotformedyet
• Gapjuction-mediated
• Retinotopicmapping• NicotinicAcetylcholineReceptors
(nAChR)• Disappearwhen
visionisfunctional• Glutamate–
AMPAreceptors
Variability within retinal waves
i) Across species
0!150!300!450!600!
Speed (μm/s)!0!37,5!75!112,5!150!187,5!
Period (s)!
Rab
bit
Mou
se
Chi
ck
Turt
leGodfrey et al. 2007
i) Across species
0!150!300!450!600!
Speed (μm/s)!0!37,5!75!112,5!150!187,5!
Period (s)!
Rab
bit
Mou
se
Chi
ck
Turt
leGodfrey et al. 2007
Variability within retinal waves
i) Across species
0!150!300!450!600!
Speed (μm/s)!0!37,5!75!112,5!150!187,5!
Period (s)!
Rab
bit
Mou
se
Chi
ck
Turt
leGodfrey et al. 2007
Zheng et al. 2004
ii) Development i) Across species
0!150!300!450!600!
Speed (μm/s)!0!37,5!75!112,5!150!187,5!
Period (s)!
Rab
bit
Mou
se
Chi
ck
Turt
leGodfrey et al. 2007
Zheng et al. 2004
ii) Development
Variability within retinal waves
i) Across species
0!150!300!450!600!
Speed (μm/s)!0!37,5!75!112,5!150!187,5!
Period (s)!
Rab
bit
Mou
se
Chi
ck
Turt
leGodfrey et al. 2007
Zheng et al. 2004
ii) Development i) Across species
0!150!300!450!600!
Speed (μm/s)!0!37,5!75!112,5!150!187,5!
Period (s)!
Rab
bit
Mou
se
Chi
ck
Turt
leGodfrey et al. 2007
Zheng et al. 2004
ii) Development
iii) Pharmacology
P4
P8
Time (sec) 500
Variability within retinal waves
i) Across species
0!150!300!450!600!
Speed (μm/s)!0!37,5!75!112,5!150!187,5!
Period (s)!
Rab
bit
Mou
se
Chi
ck
Turt
leGodfrey et al. 2007
Zheng et al. 2004
ii) Development i) Across species
0!150!300!450!600!
Speed (μm/s)!0!37,5!75!112,5!150!187,5!
Period (s)!
Rab
bit
Mou
se
Chi
ck
Turt
leGodfrey et al. 2007
P4
P8
Time (sec) 500
iv) Spatial Variability
Zheng et al. 2004
ii) Development
iii) Pharmacology
1212
Experimentsfortheemergenceofretinalwaves
Experimentforisolatedneurons,Zhengetal.,2006,Nature
Retinalwavesrequirethreecomponents:i) Spontaneousburstingactivity
1313
Experimentforisolatedneurons,Zhengetal.,2006,Nature
Retinalwavesrequirethreecomponents:i) Spontaneousburstingactivityii) Refractorymechanism(slowAfterHyperPolarisation-sAHP)
Experimentsfortheemergenceofretinalwaves
1414Experimentforcoupledandisolatedneurons,Zhengetal.,2006,Nature
Retinalwavesrequirethreecomponents:i) Spontaneousburstingactivityii) Refractorymechanism(slowAfterHyperPolarisation-sAHP)iii) Coupling(throughAcetylcholineneurotransmitter)
Coupledneuronssynchronize
Coupledneuronssynchronize
Experimentsfortheemergenceofretinalwaves
1515Experimentforcoupledandisolatedneurons,Zhengetal.,2006,Nature
Retinalwavesrequirethreecomponents:i) Spontaneousburstingactivityii) Refractorymechanism(slowAfterHyperPolarisation-sAHP)iii) Coupling(throughAcetylcholineneurotransmitter)
Coupledneuronssynchronize
IsolatedNeuronsburstindependently
Coupledneuronssynchronize
Experimentsfortheemergenceofretinalwaves
Whystudyretinalwaves?
16
Strategy:
Toproposeamodel(i)suf1icientlyclosefrombiophysicstoexplainandproposeexperimentsand(ii)suf1icientlywellposedmathematicallytoanalyse
itsdynamicsuponvaryingbiophysicalparameters(development-pharmacology).
• Modellingonecellbursting
• Modelingcellscoupling
• Modellingwavesgeneration,propagationandtermination.
Whystudyretinalwaves?
17
Strategy:
Toproposeamodel(i)suf1icientlyclosefrombiophysicstoexplainandproposeexperimentsand(ii)suf1icientlywellposedmathematicallytoanalyse
itsdynamicsuponvaryingbiophysicalparameters(development-pharmacology).
• Modellingonecellbursting
• Modelingcellscoupling
• Modellingwavesgeneration,propagationandtermination.
Mul.scalemodelling
Fromionicchanneltoneurontore.nascale
Nonlineardynamics,dynamicalsystemstheory,sta.s.calphysics.
Mainassumption
Thereareafewphysiologicalparameterscontrollingre.nalwavesdynamics,evolu.onandvariability.
Findtheseparametersfromamathema.calanalysis
Bifurca.ontheory
19
AnetworkmodelforstageIIretinalwaves
20
Membranepotentialdynamics
Cm∂V∂t
= −gLML V −VL( )− gCa V( ) V −VCa( )− gKN V −VK( )
AnetworkmodelforstageIIretinalwaves
Morris-Lecar&FastK+channels
21
Cm∂Vi∂t
= −gLML Vi −VL( )− gCa Vi( ) Vi −VCa( )− gKNi Vi −VK( )− gsAHPRi4 Vi −VK( )− gj,Ach Aj( )
j∑ Vi −VAch( )
sAHPcurrentRefractorymechanism
AnetworkmodelforstageIIretinalwaves
Morris-Lecar&FastK+channels
Membranepotentialdynamics
SetofequationsforsAHPcurrent
R R R R
ActivatedCa-gated K+ channel
Ca 4 Calcium ions bound to each saturated Calmodulin complex S
Saturated Calmodulin molecule (CaM) bind to each channel subunit
All 4 subunits R of the channel are bound to activate the channel
Gating mechanism
CaM
Ca CaCa CaCa Ca
Ca CaCa CaCa CaCa Ca
Ca
CaM CaM CaMSC
23
SACsNetwork
SACsrealisticconnections
SACsonalattice SACsbecomepointsonalattice
Modelsynapticinteractions
24
Cm∂Vi∂t
= −gLML Vi −VL( )− gCa Vi( ) Vi −VCa( )− gKNi Vi −VK( )− gsAHPRi4 Vi −VK( )− gj,Ach Aj( )
j∑ Vi −VAch( )
sAHPcurrentRefractorymechanism
AchcurrentNetworkeffect
AnetworkmodelforstageIIretinalwaves
Morris-Lecar&FastK+channels
Membranepotentialdynamics
-80
-60
-40
-20
0
20
-14 -12 -10 -8 -6 -4 -2ISN1IHc
V (m
V)
Iext (pA)
Variability within retinal waves
i) Across species
0!150!300!450!600!
Speed (μm/s)!0!37,5!75!112,5!150!187,5!
Period (s)!
Rab
bit
Mou
se
Chi
ck
Turt
leGodfrey et al. 2007
i) Across species
0!150!300!450!600!
Speed (μm/s)!0!37,5!75!112,5!150!187,5!
Period (s)!
Rab
bit
Mou
se
Chi
ck
Turt
leGodfrey et al. 2007
Variability within retinal waves
i) Across species
0!150!300!450!600!
Speed (μm/s)!0!37,5!75!112,5!150!187,5!
Period (s)!
Rab
bit
Mou
se
Chi
ck
Turt
leGodfrey et al. 2007
i) Across species
0!150!300!450!600!
Speed (μm/s)!0!37,5!75!112,5!150!187,5!
Period (s)!
Rab
bit
Mou
se
Chi
ck
Turt
leGodfrey et al. 2007
Interburst intervals
Variability within retinal waves
i) Across species
0!150!300!450!600!
Speed (μm/s)!0!37,5!75!112,5!150!187,5!
Period (s)!
Rab
bit
Mou
se
Chi
ck
Turt
leGodfrey et al. 2007
i) Across species
0!150!300!450!600!
Speed (μm/s)!0!37,5!75!112,5!150!187,5!
Period (s)!
Rab
bit
Mou
se
Chi
ck
Turt
leGodfrey et al. 2007
Interburst intervals
Variability within retinal waves
iii) Pharmacology
P4
P8
Time (sec) 500
PredicttheroleofKv3channelsinthelossofSACsexcitability
A BExperiment (Zheng et al. 2006) Model
X
Time (min)
Coupled neurons synchronize
Coupled neurons synchronize
Isolated neuronsburst independently
Cellular mechanisms of stage II retinal waves
Zheng et al. 2006
C. Synchrony through Acetylcholine
Mutual excitatory connections between SACs through
Acetylcholine
34
Waves speed
• gAc
• Waves speed
Propaga8onthreshold
Variability within retinal waves
Zheng et al. 2004
ii) Development
iv) Spatial Variability
Zheng et al. 2004
ii) Development
IsolatedNeurons gach=0.126nS
gach=0.168nS gach=0.21nS
36
NetworkofSACs:SimulatedVoltage
37
NetworkofSACs:SimulatedCalciumConcentra.on
gach=0.168nS gach=0.21nS
gach=0.126nSgach=0.102nS
38
NetworkofSACs:SimulatedCalciumConcentra.on
gach=0.168nS gach=0.21nS
gach=0.126nSgach=0.102nS
Waves size distributionlin-log log-log
A
B
C
E
N-neuronmodel
• Thereisacompe88onbetween2mechanisms:– Periodvariabilitywhichtendstodesynchronise– Acetylcholinewhichtendstosynchronise
• Thereisanintermediateregimeofcoupling,wherevariabilityismaximum
• ThereforethereisawiderepertoireofpaQerns– Weakcouplingleadstosmalllocalisedac8vity– Moderatecouplingleadstopropaga8ngpa?erns– Strongcouplingleadstocompletesynchronyofneurons
40
Model Experiment
ExperimentallyvaryingAchconductance(DataD.Karvouniari+Ins8tutdelaVision)
Model Experiment
ExperimentallyvaryingAchconductance(DataD.Karvouniari+Ins8tutdelaVision)
Variability within retinal waves
i) Across species
0!150!300!450!600!
Speed (μm/s)!0!37,5!75!112,5!150!187,5!
Period (s)!
Rab
bit
Mou
se
Chi
ck
Turt
leGodfrey et al. 2007
Zheng et al. 2004
ii) Development i) Across species
0!150!300!450!600!
Speed (μm/s)!0!37,5!75!112,5!150!187,5!
Period (s)!
Rab
bit
Mou
se
Chi
ck
Turt
leGodfrey et al. 2007
P4
P8
Time (sec) 500
iv) Spatial Variability
Zheng et al. 2004
ii) Development
iii) Pharmacology
Conclusion
• BiophysicalmodelofstageIIre8nalwavesrelevantat:• Thecellsscale(burs.ng,experimentalmatchandpredic.ons)• Thenetworkscale(wavespropaga.on)• Thedevelopmentallevel(evolu.onofionicchannelsandsynapses).
• Theore8caldescrip8onviabifurca8ontheory• Burs.ng• Interburstvariability• WavespaQerns
• Nextstep:reac8va8ngwavesinadults.
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