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UK PubMed CentralImplementation and Support
Rob Rowbotham, British Library
rob.rowbotham@bl.uk
Ross MacIntyre, MIMAS, The University of Manchester
ross.macintyre@manchester.ac.uk
What is UKPMC?
The UK-version of PubMed Central Offers the PubMed Central collection of ~1,000,000
full-text life science articles, freely available online irrespective of library holdings
US and UKPMC mirror each other’s content
Who provides UKPMC?
The British Library together with the University of Manchester and the European Bioinformatics Institute
The service is hosted by MIMAS, the national academic data centre
Who funds UKPMC?
The development of UKPMC is funded by principal funders of biomedical research in the UK
Overview
UKPMC Implementation
UKPMC Manuscript Submission System (UKMSS)
XML Conversion suppliers
Loading and managing grantees data
Setting up the help desk
UKPMC Implementation
UKMSS
OA
Document Ingest
Researchers
Authors
Publishers
XML, XML, HTMLHTML
SGML, SGML, XML, XML, HTMLHTML
Free public access
PDF, MS PDF, MS WordWord
PDFPDF
UKPMC = pPMC + SQL Database1st Production Instance
pPMC Web Application
PMC at NCBI
pPMC Database and Utilities
pPMCCollector
(C++)
SQL Database
NCBI Entrez
XMLArticle and
Table of ContentsXSLT
IIS(C++ CGI
and MSXML 4.0
SP2)
User
pPMC Modules
pPMC Loader
(C++ and Xerces)
Legend
NCBI Hosted Modules
Local Modules
pPMC Module
Database Data Flow
XSLT Transform
pPMC webUtil(C++)
Google and the sitemap hiatus
UKPMC Manuscript Submission System
Two routes to get manuscripts in to UKPMC:
1. Direct via publisher
e.g. publish in an open access journal
costs associated with ‘open access’ publishing met from research funding
2. Author - upload a copy of the final manuscript via the UK Manuscript Submission System
UK Manuscript Submission System
Go Live 8th January 2007
Distribution of usernames and passwords
XML Conversion service suppliers
UKMSS submissions accepted in various formats – mainly PDF and MS Word
Documents are converted to XML using specialist conversion service
Suppliers selected Oct 2006 – contract start 1st Jan 2007
Selection criteria – price, quality, speed, service level
Grantee Data Load
8 Funding bodies lead by Wellcome Trust
Grant data supplied - 9000+ Users, 16000+ Grants in total
Load to the UKMSS Admin system
Distribution of usernames and passwords
Updates
Phase 2 – Implementation of Microsoft CRM
The Help Desk
Core responsibilities:
XML Conversion service QA Help Desk support
Recruitment of staff
Training
Other tasks/Documentation
Contact us
UKPMC helpdesk ukpmc@bl.uk / 01937 546699 further information available @ ukpmc.ac.uk
We welcome feedback, we want to improve our service with your comments
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