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A presentation which I gave at CodeJam 4 in Marseille, France.
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2. 3. Complexity increase 4. Tons of Jobs executed http://www.flickr.com/photos/mmayo/6340736/ 5. Two main areas: Computed Results Simulations Details 6. My current framework to handle this + Neuronvisio Sumatra 7. Neuronvisio -- background
http://mattions.github.com/neuronvisio/ 11. Integrate with your existing model easily if in Python if in Hoc 12. Pyramidal cell in Model Db 13. Neuronvisio -- saving simulation results + Geometry Computed Array NeuroML HDF format 14. Why HDF (Hierarchical Data Format)
19. Neuronvisio HDF file structure 20. The tree in details - geometry
21. The tree in details -- vecRef
24. Loaded the results of a simulation. 25. Second area to tackle Neuronvisio Computed Results Simulations Details 26. Simulations details:
34. Slide from Andrew Davison (main developer), http://neuralensemble.org/meetings/talks/CodeJam3_Davison_Sumatra.pdf http://neuralensemble.org/trac/sumatra 35.
Adding git to smt supported vcs 38. How to run the simulation with Sumatra smt run simulator=python main=main.py default.param After Configuration smt run default.param 39. A part of my param file 40. Sumatra web interface 41. Retrieving the simulation details 42. Accessing the plot from the link 43. Summing up To run the simulation:smt run default.param To browse ans search within the simulations smtweb To load them in Neuronvisio: run nrnvisio Data/DD-MM-YYYY/Sim_N parameters & depsautomatically tracked everything isarchived andsearchable all the data areaccessible: further analysis/modifyingthe plot/exploresomething else 44. Acknowledgement
49. The end Neuronvisio Sumatra Thanks. Computed Results Simulations Details
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