Amp keynote wilbanks

Preview:

DESCRIPTION

Opening talk at the reproducible research workshop at AMP 2011, Vancouver.

Citation preview

freedom (to reproduce)

john wilbanks

@creativecommons

@wilbanks

14 July 2011

freedom.

1. reproducibility > sharing.

2. best practices.

3. freedom (as in “to reproduce”).

non-reproducible = people die.

CIT

ATI

ON

S

Chemical probe available

0

500

1000

1500

2000

2500

3000

ERa

AR

PP

AR

aP

PA

Rg

PR

GR

RA

Ra

VD

R

MR

PX

R

LXR

aLX

Rb

PP

AR

dFX

R

TRb

CA

R

RO

Rg

NG

FIB

a

ERb

NG

FIB

b

HN

F4a

RO

Ra

SHP

ERR

a

SF1

DA

X

Re

v-er

ba

RA

Rb

CO

UP

2

RA

Rg

TRa

ERR

g

LRH

1C

OU

P1

NG

FIB

gR

ev-

erb

b

RX

Ra

RX

Rb

RX

Rg

PN

R

ERR

bR

OR

b

GC

NF

TLX

TR2

TR4

CO

UP

3H

NF4

g

NUCLEAR HORMONE RECEPTOR

the easier it is to reproduce chemically…

No chemical probes available

(slide courtesy of Aled Edwards, SGC)

reproducibility as collaboration.

http://www.flickr.com/photos/creativecommons/3304579594

note: not a scientist.

1. reproducibility > sharing.

2. best practices.

3. freedom (as in “to reproduce”).

old school

new school

1. reproducibility > sharing.

2. best practices.

3. freedom (as in “to reproduce”).

reality.

“open” and “closed” aren’t even on the menu here.

re-identification

consenting to uncertainty.

Browser Window

Freedoms you are granting

Right to do research with your data

Right to redistribute your data

Right to publish results of research

from your data

Right to commercialize products

derived from research on your data

Browser Window

Obligations you are imposing

I don’t want to be re-identified

Only health research allowed.

Browser Window

Check to confirm that:

I understand the risks

I consent that my data can be used for

research.

Although I can withdraw at any time,

versions of my data that are already

distributed may not be retrievable.

Warning You must click yes on each element to proceed.

freedom.

freedom isn’t always about politics.