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Integration of production and aqueous two-phase systems extraction of extracellular Fusarium solani pisi cutinase fusion proteins M.T. Cunha, M.J.L. Costa, C.R.C. Calado, L.P. Fonseca, M.R. Aires-Barros *, J.M.S. Cabral Centro de Engenharia Biolo ´gica e Quı ´mica, Instituto Superior Te ´cnico, Av. Rovisco Pais, 1049-001 Lisbon, Portugal Received 25 October 2001; received in revised form 27 March 2002; accepted 8 July 2002 Abstract Genetic engineering was integrated with the production and purification of Fusarium solani pisi cutinases, in order to obtain the highest amount of enzyme activity units, after purification. An aqueous two-phase system (ATPS) of polyethylene glycol 3350, dipotassium phosphate and whole broth was used for the extraction of three extracellular cutinases expressed in Saccharomyces cerevisiae . The production/extraction process was evaluated regarding cutinases secretion in the medium, partition behaviour and extraction yields in the ATPS. The proteins studied were cutinase wild type and two fusion proteins of cutinase with the tryptophane-proline (WP) fusion tags, namely (WP) 2 and (WP) 4 . The (WP) 4 fusion protein enabled a 300-fold increase of the cutinase partition coefficient when comparing to the wild type. However, the secretion of the fusion proteins was lower than of the wild type cutinase secretion. A batch extraction strategy was compared with a continuous extraction in a perforated rotating disc contactor (PRDC). The batch and continuous systems were loaded with as much as 60% (w/w) whole cultivation broth. The continuous extraction strategy provided a 2.5 higher separation capacity than the batch extraction strategy. Considering the integrated process, the cutinase-(WP) 2 proved to lead to the highest product activity, enabling five and six times more product activity than the wild type and the (WP) 4 fusion proteins, respectively. # 2002 Elsevier Science B.V. All rights reserved. Keywords: Aqueous-two phase systems; Cutinase fusion protein; Batch and continuous extraction 1. Introduction The production of foreign proteins using a selected host with the necessary post-translational modifications is one of the key successes in modern biotechnology. This methodology allows the industrial production of proteins that were otherwise produced in small quantities. However, * Corresponding author. Tel.: /351-21-8419065; fax: /351- 21-8419062 E-mail address: [email protected] (M.R. Aires- Barros). Journal of Biotechnology 100 (2003) 55 /64 www.elsevier.com/locate/jbiotec 0168-1656/02/$ - see front matter # 2002 Elsevier Science B.V. All rights reserved. PII:S0168-1656(02)00225-0

Integration of production and aqueous two-phase systems extraction of extracellular cutinase fusion proteins

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Integration of production and aqueous two-phase systemsextraction of extracellular Fusarium solani pisi

cutinase fusion proteins

M.T. Cunha, M.J.L. Costa, C.R.C. Calado, L.P. Fonseca,M.R. Aires-Barros *, J.M.S. Cabral

Centro de Engenharia Biologica e Quımica, Instituto Superior Tecnico, Av. Rovisco Pais, 1049-001 Lisbon, Portugal

Received 25 October 2001; received in revised form 27 March 2002; accepted 8 July 2002

Abstract

Genetic engineering was integrated with the production and purification of Fusarium solani pisi cutinases, in order to

obtain the highest amount of enzyme activity units, after purification. An aqueous two-phase system (ATPS) of

polyethylene glycol 3350, dipotassium phosphate and whole broth was used for the extraction of three extracellular

cutinases expressed in Saccharomyces cerevisiae . The production/extraction process was evaluated regarding cutinases

secretion in the medium, partition behaviour and extraction yields in the ATPS. The proteins studied were cutinase wild

type and two fusion proteins of cutinase with the tryptophane-proline (WP) fusion tags, namely (WP)2 and (WP)4. The

(WP)4 fusion protein enabled a 300-fold increase of the cutinase partition coefficient when comparing to the wild type.

However, the secretion of the fusion proteins was lower than of the wild type cutinase secretion. A batch extraction

strategy was compared with a continuous extraction in a perforated rotating disc contactor (PRDC). The batch and

continuous systems were loaded with as much as 60% (w/w) whole cultivation broth. The continuous extraction strategy

provided a 2.5 higher separation capacity than the batch extraction strategy. Considering the integrated process, the

cutinase-(WP)2 proved to lead to the highest product activity, enabling five and six times more product activity than the

wild type and the (WP)4 fusion proteins, respectively.

# 2002 Elsevier Science B.V. All rights reserved.

Keywords: Aqueous-two phase systems; Cutinase fusion protein; Batch and continuous extraction

1. Introduction

The production of foreign proteins using a

selected host with the necessary post-translational

modifications is one of the key successes in

modern biotechnology. This methodology allows

the industrial production of proteins that were

otherwise produced in small quantities. However,

* Corresponding author. Tel.: �/351-21-8419065; fax: �/351-

21-8419062

E-mail address: [email protected] (M.R. Aires-

Barros).

Journal of Biotechnology 100 (2003) 55�/64

www.elsevier.com/locate/jbiotec

0168-1656/02/$ - see front matter # 2002 Elsevier Science B.V. All rights reserved.

PII: S 0 1 6 8 - 1 6 5 6 ( 0 2 ) 0 0 2 2 5 - 0

the separation and purification of these proteinsfrom the cultivation media constitutes a major

bottleneck for the widespread commercialisation

of recombinant proteins. The major production

costs (50�/90%) for a typical biological product

resides in the purification strategy. There is a need

for efficient, effective and economic large-scale

bioseparation techniques, to achieve high purity

and high recovery, while maintaining the biologi-cal activity of the molecule. The key now lies in

understanding downstream processing, integrating

it with upstream processing, and thus providing

better insights into improving the economics of the

‘whole’ process itself. Common sense dictates that

a large-scale process should be designed to mini-

mise the number of steps while maintaining high

yields and product purity, quality and activity.The choice of the purification scheme depends

on the location of the target protein and on the

desired purity of the product, which is also

determined by the further utilisation of the pro-

tein. It has been demonstrated that it is possible to

use liquid�/liquid extraction technology to the first

downstream purification steps enabling simulta-

neously separation and concentration of targetprotein (Kula, 1985; Albertsson, 1986; Diamond

and Hsu, 1992; Zaslavsky, 1995; Costa et al.,

2000).

Aqueous two-phase systems (ATPS) offer dif-

ferent physical and chemical environments, which

allow for the partitioning of solutes such as

proteins (Cunha et al., 2000), cell particles and

nucleic acids. The phases of the system have a highcontent of water (between 80 and 90%) and have

been shown to provide a protective environment

for biological materials (Albertsson, 1986).

Recombinant DNA technology allows the fu-

sion of affinity tags to the original protein. This

genetic modification of the target protein can

greatly increase the purification efficiency in the

purification of proteins in PEG/salt ATPS (Kohleret al., 1991a,b; Berggren et al., 1999, 2000; Costa et

al., 2000; Bandmann et al., 2000). Its strong

affinity for the PEG rich phase, was attributed to

the high tryptophan content.

The technology for the large-scale recovery,

with these systems, has been, mostly, based on

batch wise mode. An alternate scheme to the batch

extraction is the use of a column type extractor toimprove extraction efficiency using ATPS. The

selection of a particular contacting column, de-

pends upon the needs of the operation, the proper-

ties of the biomolecules, and the type of ATPS

involved (Laddha and Degaleesan, 1976; Cunha

and Aires-Barros, 2002). The perforated rotating

disc contactor (PRDC) is well suited for systems

with low interfacial tension.The model system used for this study was a

recombinant Fusarium solani pisi cutinase, which

consisted of a single polypeptide chain with one

disulphide bridge, which is essential for the activity

of the enzyme. The X-ray structure of cutinase

revealed an a/b hydrolase fold with an active site

serine accessible to the solvent. This serine is a

member of the Ser-Asp-His catalytic triad (Marti-nez et al., 1992). Mutants of this recombinant

cutinase have been constructed with a fusion

peptide composed of tryptophan residues inter-

spersed with prolines, which enabled the increase

of the protein hydrophobicity.

The aim of this work was to compare the effect

of the fusion peptide (WP) on the secretion,

partitioning and extraction yields. The geneticengineering was integrated with the production

and purification scheme, i.e. the integration is here

considered in an economic sense of the ‘whole’

process. The goal is to find a fusion protein, which

leads to the highest amount of enzyme activity

units, after purification, with such ATPS with

whole broth. Two different extraction strategies

(batch and continuous mode operation) were alsoevaluated.

2. Materials and methods

2.1. Recombinant cutinases

F. solani pisi cutinase was cloned and expressed

in S. cerevisiae strain MM01. Cutinase exhibitsmolecular weights of 20 605 (wild type) and an

isoelectric point of 7.8. Fusion proteins of cutinase

with affinity tags composed of Tryptophane (W)

peptides interspersed with proline (P) were con-

structed and provided by the Unilever Research

Laboratory, Vlaardingen, The Netherlands. The

M.T. Cunha et al. / Journal of Biotechnology 100 (2003) 55�/6456

tags (WP)2 and (WP)4 have been fused to the C-terminus of cutinase. The molecular weights of the

resulting cutinases were 21 172 and 21 739 for

cutinase-(WP)2 and cutinase-(WP)4, respectively.

2.2. Cutinase production

A two fed-batch cultivation was performed in a

5 l Braun bioreactor (Biostat† MD B. Braun). Thefirst phase was a batch growth phase initiated by

transfer of inoculum cells (1.2 g dcw l�1) to a 2.0 l

culture medium. After 18 h of the batch growth

phase D(�/)-galactose was added for induction of

cutinase expression. Following induction, an ex-

ponential feeding phase was started by addition of

glucose and yeast extract, considering a constant

specific growth rate of m�/0.14 h�1.The composition and cultivation conditions of

the pre-cultivation for inoculum growth and of the

cutinase production were performed according to

Calado et al. (2002).

The culture broth was added directly to the

ATPS without any pre-treatment.

2.3. Dry cell weight

Optical density was measured at 600 nm after

appropriate dilution with 0.8% (v/v) NaCl. Dry

cell weights were obtained by filtrating the culture

and subsequently drying the filter in a microwave

oven at 105 8C for 5 min until constant weight.

Dry cell weight measurements were correlated to

turbidity measurements and subsequently con-verted to dry cell weight.

2.4. Cutinase extraction

2.4.1. Polymers and chemicals

Polyethylene glycol (PEG) 3350, p-nitrophenyl

butyrate (PNPB), cholic acid and Coomassie

Brilliant Blue G, dye content of approximately98% were obtained from Sigma. Tetrahydrofuran

and phosphate salts were of analytical grade and

were supplied by Merck.

2.4.2. Batch extraction

ATPS were prepared from stock solutions by

weighting appropriate amounts of 50% (w/w) PEG

3350, 55% (w/w) K2HPO4 and culture broth. Theequilibrium systems were done in 10 ml centrifugal

test tubes. The tubes were manually mixed by

turning them up side down several times. The

separation was achieved with a low speed centri-

fugation step (3000 rpm for ca. 10 min). After the

complete settling of the phases, their volumes were

noted and samples of each phase were taken. At

least two control systems were prepared for eachset of conditions.

The blank was a system without culture broth.

The experiments were performed at 269/2 8C. The

top phase pH was measured and found to be 8.59/

0.5.

2.4.3. Continuous extraction

A schematic representation of the experimental

set-up is shown in Fig. 1.

The PRD column was made of glass and had an

internal cross section area of 804 mm2 with an

expanded cross section area of 5542 mm2. The

expansion was designed to enable higher input

flows, without the occurrence of flooding. Sevenperspex discs distanced 15 mm from each other

with 24% free area each, 1 mm height and 30 mm

Fig. 1. Schematic diagram of the experimental set-up, (A) light

phase feed; (B) heavy phase feed; (C) rotameter; (D) heavy

phase inlet; (E) light phase outlet; (F) heavy phase outlet; (G)

light phase inlet.

M.T. Cunha et al. / Journal of Biotechnology 100 (2003) 55�/64 57

diameter were used. The rotor was driven by anelectric motor, at a speed of 170 rpm, which was

measured by a portable tachometer. The shaft had

a diameter of 8.5 mm.

Both phases were fed to the column by gravity,

in a counter-current operation mode, from over-

head tanks. The flow-rates to the column were

indicated by rotameters, fine control being

achieved by means of stainless steel needle valves.The rotameters were used to indicate the con-

stancy of the flow and the rates were determined

by timing the flow of known volumes of the phases

to the nearest 1/10 of the second. Room was kept

at 209/1 8C. The column had a cooling jacket,

which was kept at 20 8C.

Before starting the run, the column was filled

with 235 ml of clear bottom phase and 250 ml ofclear top phase. The bottom phase consisted of

17% (w/w) dipotassium phosphate and 0.05% (w/

w) PEG 3350. The top phase was composed of

30% (w/w) PEG 3350 and 3% (w/w) dipotassium

phosphate.

The agitation was started, and the top phase

flow rate was fixed at the desired flow rate. After,

the bottom phase including the 83% (w/w) wholebroth (ca. 2.2% (w/w) dry cell weight and approxi-

mately 0.4 g l�1 total protein) was fed into the

column. Samples of the outlet and inlet streams

were taken and checked for protein and activity

content. The steady state was achieved when a

constant activity in the top outlet-stream samples

was observed.

The control systems were done in 10 mlcentrifugal test tubes. Analogous volumes to the

inlet streams of top and bottom phases were added

and mixed by turning the tubes up side down

several times. The tubes were subjected to the same

treatment as in the batch extraction experiments.

2.5. Cutinase activity assay

The cutinase esterolytic activity was determined

spectrophotometrically, following the hydrolysis

of PNPB at 400 nm. Twenty microlitres of sample

were added to 980 ml of a 0.56 mM PNPB solution

in 50 mM potassium phosphate buffer pH 7 with

11.3 mM sodium cholate and 300 mM tetrahy-

drofuran. The reactions were followed for 1 minagainst the blank solution.

One unit of activity was defined as the amount

of enzyme required to convert 1 mmol of PNPB in

p-nitrophenol in 1 min, under the specified condi-

tions. The extinction coefficient of p-nitrophenol

was considered to be 1.84�/104 M�1 cm�1, from

the supplier Sigma. Each sample was analysed at

least twice. The samples were all diluted withdistilled water.

As the phase components may enhance the

activity, the specific activity of three broth dilu-

tions in contact with the phases (diluted as the

samples) were checked. The correction factor was

given by the ration of the average specific activities

between the top and bottom phases.

The total activity recovered in both phases wascompared with the one of the initial preparation,

taking into account the activation due to the phase

components.

The partitioning coefficient (K ), the yield of

cutinase (Y ), the purification factor and the

concentration factor were defined as follows:

K�[U ]top

[U ]bot

Volume ratio�Top phase volume

Bottom phase volume

PF�U=mg proteinsample

U=mg proteinfeed

Ytop�Utop

Uadded

�100

Ulost�Uadded � Utop � Ubot

Uadded

�100

CF�[U ]top

[U ]broth

2.6. Protein determination

Total protein was quantified using the Bradford

(1976) assay. Coomassie reagent had a dye content

M.T. Cunha et al. / Journal of Biotechnology 100 (2003) 55�/6458

of 98% and absorbance was measured at 595 nm.Bovine serum albumin was used as standard (using

a volume ratio of sample/coomassie mixture of 30/

150).

Total protein recovered in both phases was

compared with the protein initially introduced.

Like in the activity cutinase assay, as the phase

components may change the results obtained, the

total protein of three different broth dilutions inthe phases (diluted as the samples) were checked

and corrected when necessary.

3. Results and discussion

The integrated approach described in this work

pretends to find the optimal strategy which

combines high cutinase production and extraction

yields using ATPS. The purification tags were

designed to enable high recoveries in such extrac-

tion systems.

3.1. Cutinase production

A fed-batch cultivation was performed in a two-stage culture comprising one batch yeast growth

phase followed by an exponential feed phase for

cutinase production, in order to achieve high yield,

high volumetric productivity and high product

concentration. This strategy enabled high cellular

density for the three MM01 S. cerevisiae recombi-

nant strains (between 38 and 40 g dcw l�1).

However, the increased hydrophobic length ofthe peptide (WP)n fused to cutinase had a negative

effect on the extracellular cutinase activity. For the

cutinase wild type, cutinase-(WP)2 and cutinase-

(WP)4 producing strains with extracellular activ-

ities of 162, 88 and 2.2 U ml�1, and specific

activities of 266, 200 and 15 U mg�1 protein, were,

respectively, obtained (Calado et al., 2002).

The different cutinase extracellular activitiesobserved for the several yeast strains could be

due to different production levels of the cutinases

or, most probably to the impaired secretion of the

more hydrophobic ones. This hypothesis is sup-

ported by the work performed by Sagt et al.

(1998).

3.2. Cutinase extraction with PEG/phosphate

The cultivation broth obtained from the opti-

mised fed-batch strategy for cutinases extracellular

production was directly used in the ATPS both in

batch and continuous operation mode.

3.2.1. Batch extraction

The effect of the fusion peptide and its length onthe cutinase partitioning in ATPS of 5% (w/w)

PEG 3350/15% (w/w) K2HPO4 was evaluated. The

ATPS composition used was selected because of its

low volume ratio (all systems exhibited a volume

ratio of 0.2), which enables the potential concen-

tration of the protein in the top phase.

The utilisation of PEG 3350 was based on

previous work (Sebastiao et al., 1993, 1994), inwhich it was demonstrated that an increase in PEG

molecular weight generally decreased the cutinase

partition coefficient. On the other hand, using

PEG with low molecular weights leads to higher

expenses for polymer and salt, and, therefore, to

additional costs. We have opted for an average

and commercially available molecular weight.

The pH value of all systems studied was 8.5 (9/

0.5), a pH optimal for the activity of the cutinase,

and a pH value at which cutinase is negatively

charged (pI�/7.8), therefore, enabling to take

advantage of electrostatic repulsion between the

phosphate ions, enriched in the bottom phase, and

cutinase. We recall that we are interested in

directing the target protein, cutinase, to the top

phase whereas the remaining proteins and cellsshould remain in the bottom phase.

The effect of the fusion peptide on the partition

coefficient and recovery yields is presented in

Table 1. The wild type cutinase preferably parti-

tioned to the salt rich phase, while the mutant

cutinases preferred the PEG top phase. The cells

remained in the bottom phase for all cases, as

expected. The fusion peptide enabled approxi-mately, a 300-fold increase of the cutinase parti-

tion coefficient, comparing the wild type with the

(WP)4 cutinases. For this mutant a yield of 100%

and a concentration factor over five were ob-

tained. Comparing the two fusion cutinases

((WP)2 and (WP)4), an increase of the extraction

M.T. Cunha et al. / Journal of Biotechnology 100 (2003) 55�/64 59

results was observed, due to the duplication of the

hydrophobic amino acids.

The batch extraction systems were loaded with

different amounts of whole broth, varying from 5

to 63% (w/w) (Table 1). The results obtained show

the independence of the cutinases extraction of the

whole broth. This allows the integration of the

cultivation step with the isolation and purification

steps. Furthermore, the extraction and isolation of

the fused cutinase from whole cultivation broth

was obtained in a single step, with its concentra-

tion in the PEG rich phase.

Regarding the purification factor, although it is

an important parameter in extraction evaluation,

in this case it was of minor importance. In fact,

cutinase constitutes around 95�/99% of the total

protein content of the broth, therefore, high

purification factors cannot be expected.

With the PEG/salt system selected and by using

a fused cutinase, integration of the first two steps

of the purification scheme into one step was

achieved, which allowed simultaneously separa-

tion and concentration of the target protein.

Although, the introduction of a hydrophobic tag

increased cutinase partition to the PEG rich phase

(Fig. 2A), when looking to the expression levels by

the microrganism the secreted activity and total

protein, decreased with increased hydrophobicity

of the fusion protein (Fig. 2B). As a consequence,

in spite of the better partition behaviour of the

cutinase-(WP)4 fusion protein the activities ob-

tained in the top phase (8.2 U ml�1) were lower

than the ones obtained for the wild type (23 U

ml�1).

3.2.2. Continuous extraction

Based on the cutinase extracellular activity and

on the partition results (around 125 U ml�1 in the

top phase), the fusion protein cutinase (WP)2 was

selected for the cutinase continuous extraction

studies.

A PRDC was applied for cutinase extraction

from the whole cultivation broth. This contactor is

well suited for systems with low interfacial tension.

The use of extraction columns is justified when the

selectivity of the system is not extreme and since

the cells partition to the bottom phase, the

cutinase partition coefficient should be higher

than one. Both these conditions are met with

cutinase-(WP)2 extraction in PEG/phosphate

ATPS.Like for the batch strategy, the continuous

extraction experiments were restricted to one

system, the ATPS PEG 3350 and K2HPO4. The

tie-line used was fixed (TLL�/31.5% (w/w)) and

was chosen to allow a safe operation, i.e. as the

cultivation broth conditions have an effect on the

equilibrium phases composition we wanted to

assure that the system would not fall in the one

phase region of the phases diagram.

The cutinase content of the feed salt rich, was

dependent on the cultivation productivity, and

varied between 20 and 30 Activity Units ml�1.

Table 1

Experimental results of cutinase extractions in ATPS of 5% (w/w) PEG and 15% (w/w) K2HPO4 at room temperature: partition

coefficient; top phase yield, purification and concentration factors

Cutinase Broth (% w/w) K Y PF CF

Wild type 63 0.249/0.03 4.389/0.03 1.79/0.3 0.199/0.01

Cutinase-(WP)2 5 4.09/0.1 409/1 n.d. 0.199/0.02

15 4.29/0.5 409/3 n.d. 0.659/0.09

30 4.49/0.2 429/1 n.d. 1.279/0.02

63 5.19/0.7 369/4 2.69/0.3 1.39/0.1

Cutinase-(WP)4 20 1089/6 949/8 n.d. 1.239/0.02

40 809/6 959/2 n.d. 2.29/0.1

63 629/9 1009/5 5.49/0.9 5.39/0.1

All systems exhibited a volume ratio of 0.2.

M.T. Cunha et al. / Journal of Biotechnology 100 (2003) 55�/6460

Table 2 shows the experimental results of the

column extraction runs, after attaining the sta-

tionary state, and of the controls (10 ml test tube

batch extractions), obtained for the fused cutinase

(WP)2. When adding the salt to the culture broth,

some cell rupture occurs, which leads to an

increase of the cutinase and protein concentrations

compared with the initial broth. These values

ranged from 11 to 40% for cutinase concentration

and from 30 to 50% for protein concentration. The

yields presented in Table 2 were determined with

respect to the inlet stream, i.e. already taking into

account the concentrations after the cell rupture.

However, the purification and concentration fac-

tors are determined with respect to the cultivation

broth conditions (before adding the salt).

The run 2/2 enabled a higher extraction effi-

ciency than the one step procedure, with a extrac-

tion yield of 83%, a purification factor of 3.6 and a

concentration factor of 0.97.

Comparing the continuous extraction yield with

the one of the control system of run 2/2 (Table 2),if a two step batch extraction would be applied to

this system (with a volume ratio of 1 and a

partition coefficient of 1.89/0.1), a final yield of

78% would be achieved. Only a three-step extrac-

tion would enable a recovery of 90%. The global

efficiency (based on the Murphee efficiency for the

continuous phase) was found to be 42%.

3.3. Integration of cutinase production and

extraction

In order to integrate the production with the

extraction of cutinase using PEG/phosphate

ATPS, a comparison of the batch versus contin-

Fig. 2. Effect of fusion peptide on the partition in an ATPS of 5% PEG, 15% K2HPO4 and 63% whole broth (% w/w) (A) and, on the

secreted protein (grey) and activity (black) achieved from fed-batch cultivations (B).

Table 2

Experimental results of the column extraction runs, after attaining the stationary state, and of the control systems

Run D.C.W (g l�1) Cutinase (U ml�1) Protein (mg l�1) Y PF CF

Column Control Column Control Column Control

1/1 25.5 23 333 55 519/1 1.8 2.119/0.04 0.70 0.829/0.02

2/2 25.5 23 403 83 519/1 3.6 2.559/0.05 0.97 0.829/0.02

3/3 26.1 24 333 61 609/11 3.4 69/2 0.84 1.09/0.2

2/4 27.0 26 276 51 569/1 4.1 1.919/0.05 1.1 1.459/0.05

4/2 9.30 40 358 80 869/4 1.6 3.89/0.9 0.21 0.449/0.01

Conditions of the cultivation broth used in each run are given. The run designation refers to the continuous phase volumetric flow

rate (ml min�1) to dispersed phase volumetric flow rate (ml min�1). Ten millilitre test tube batch extractions.

M.T. Cunha et al. / Journal of Biotechnology 100 (2003) 55�/64 61

uous extraction, as well as different fusion pro-

teins, with regard to extraction performance, was

made (Fig. 3). This figure comprises the optimal

cutinase production using a fed-batch strategy, the

extraction results using ATPS in a batch and

continuous mode and a rough economic evalua-

tion based in laboratory and scale-up extraction

data. To be able to make these comparisons a

common base of 2.88 l of cultivation broth

processed in 1 day was selected, as this is the

total amount of broth that the selected column

is able to process in 1 day, at the flow rate of

2 ml min�1.Comparing the concentration of cutinases in the

top phase, cutinase-(WP)2 extraction in batchwise

mode led to the higher product concentration (125

U ml�1). As previously mentioned, in spite of the

extreme yields obtained for the (WP)4 fusion

protein, the product concentration in the top

phase was lower than the one obtained with the

wild-type due to its very low expression levels.

By using a PRDC with ATPS for continuous

extraction of cutinase-(WP)2, higher yields were

obtained, increasing from 36 to 83%.

Regarding the separation capacity, i.e. the total

amount of units separated cutinase-(WP)2 extrac-

tion in continuous mode led to the higher results

(252 426 Activity Units per day). It is actually 2.7

times higher than one step batch extraction (91 238

Activity Units per day).

Regarding the cost evaluation, based only on

the chemicals used, although the continuous

extraction required larger amounts of polymers

and salts, as it enabled a larger amount of units

recovered, it also led to the lowest cost of

chemicals/activity unit after extraction.

Fig. 3. Results obtained for 2.88 l cultivation broth and extraction process processed in 1 day, either in batch or continuous (dispersed

and continuous flow rate of 2 ml min�1).

M.T. Cunha et al. / Journal of Biotechnology 100 (2003) 55�/6462

4. Conclusions

A fed-batch cultivation strategy allowed high

cellular density for the three strains, although the

cutinases extracellular activity decreased with the

increased hydrophobicity of the fusion peptide.

The extraction of cutinase with PEG 3350/

K2HPO4 ATPS, proved to suit for the extraction

of the cutinase-(WP)n fusion proteins to the PEG

rich phase while the wild type had a tendency for

the salt rich phase. This different behaviour of the

fusion proteins is due to the hydrophobic tag that

directs the protein to the more hydrophobic phase

(PEG rich phase). The broth does not interfere in

the partitioning of the target protein�/cutinase at

least up to 63% (w/w). The partition coefficient of

the wild type cutinase, (WP)2 and (WP)4 was

found to be 0.24, 4.4 and around 80, respectively.Although, the partition coefficient and the yield

of the most hydrophobic fusion protein were very

high, due to its lowest secreted yields it rendered it

worse than the wild type in what matters to

separation capacity.

The fusion protein with the (WP)2 tag has

proved to be the best candidate combining expres-

sion and extraction yields. The highest separation

capacity was obtained for this protein. Comparing

the continuous with the batch extraction mode, it

was possible to achieve two times higher recovery

yields with the former. The optimum flow ratio

found was 1, with a linear velocity of 3.67�/10�5

m s�1 for both phases. However, the outlet

solution is 1.5 times more diluted in continuous

than in batch mode operation.

Acknowledgements

The authors acknowledge Dr Maarten Egmond,

Dr Arthur Fellinger and Dr Maurice Mannesse

from Unilever Research Laboratory for providing

the yeast strains. M.T. Cunha, M.J.L. Costa and

C. Calado acknowledge fellowship from Fundacao

para a Ciencia a Tecnologia, Portugal. This

investigation was supported by EU project BIO4-

CT 96-0435.

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