Aquatic Sciences Publications

2012

Scientific papersAmorim, F. N., Cirano, M., Soares, I. D., Campos, E. J. D., Middleton, J. F. 2012. The influence of large-scale circulation, transient and local processes on the seasonal circulation of the Eastern Brazilian Shelf, 13°S. Continental Shelf Research, 32, 47-61.

Ansmann, I.C., Parra, G.J., Chilvers, B.L. and Lanyon, J.M. (2012). Dolphins restructure social system after reduction of commercial fisheries. Animal Behaviour 84: 575-581.

Ansmann, I.C., Parra, G.J., Lanyon, J.M. and Seddon, J.M. (2012). Fine-scale genetic population structure in a mobile marine mammal: inshore bottlenose dolphins in Moreton Bay, Australia. Molecular Ecology 21, 4472-4485.

Baylis, A.M.M., Page, B., McKenzie, J. and Goldsworthy S.D. (2012). Individual foraging site fidelity in lactating New Zealand fur seals: continental shelf versus oceanic habitats. Marine Mammal Science. 28: 276-294.

Bryars, S., Rogers, P., Huveneers, C., Payne, N., Smith, I. and McDonald, B. (2012). Small home range in southern Australia’s largest resident reef fish, the western blue groper (Achoerodus gouldii): implications for adequacy of no-take marine protected areas. Marine and Freshwater Research 63: 552–563.

Baumgartner, L. J., Bettanin, M., McPherson, J., Jones, M., Zampatti, B. and Beyer, K. (2012) Influence of turbidity and passage rate on the efficiency of an infrared counter to enumerate and measure riverine fish. Journal of Applied Ichthyology 28, 531-536.

Bowyer, J.N., Qin, J.G., Smullen, R.P., Stone, D.A.J., 2012. Replacement of fish oil by poultry oil and canola oil in yellowtail kingfish (Seriola lalandi) at optimal and suboptimal temperatures. Aquaculture, 356-357: 211-222.

Bowyer J.N., Qin J.G., Adams L.R., Thomson, M.J.S., Stone D.A.J., 2012. The response of digestive enzyme activities and gut histology in yellowtail kingfish (Seriola lalandi) to dietary fish oil substitution at different temperatures. Aquaculture 368, 19–28.

Bowyer, J.N., Qin, J.G., Stone, D.A.J., 2012. Protein, lipid and energy requirements of cultured marine fish in cold, temperate and warm water: a review. Reviews in Aquaculture 4: 1-23.

Bowyer, J.N., Rout-Pitt, N., Bain, P.A., Stone, D.A.J., Schuller, K.A., 2012. Dietary fish oil replacement with canola oil up-regulates glutathione peroxidase 1 gene expression in yellowtail kingfish (Seriola lalandi). Comparative Biochemistry and Physiology - Part B 162: 100-106.

Bryars, S., Rogers, P., Huveneers, C., Payne, N., Smith, I. and McDonald, B. (2012). Small home range in southern Australia’s largest resident reef fish, the western blue groper (Achoerodus gouldii): implications for adequacy of no-take marine protected areas. Marine and Freshwater Research 63: 552–563.

Chapperon C & Seuront L (2012) Temporal shifts in the motion behavior and habitat use in an intertidal gastropod. Journal of the Marine Biological Association of the United Kingdom. 93: 1025-1034.

Chick, R.C., Mayfield, S., Burch, P. Turich, S.N., McGarvey, R. (2012). Detecting change in density and biomass of a benthic marine invertebrate following commercial fishing. Fisheries Research: Vols 129–130. pp94–105.

Collins, G.M., Ball, A.S., Qin, J.G., Bowyer, J., Stone, D., 2012. Effect of alternative lipids and temperature on growth factor gene expression in yellowtail kingfish (Seriola lalandi). Aquaculture Research. DOI: 10.1111/are.12067.

Conallin, A. J, Smith, B. B, Thwaites, L.A, Walker, K. F and Gillanders, B. M. (2012) Environmental Water Allocations in regulated lowland rivers may encourage offstream movements and spawning by common carp, Cyprinus carpio: implications for wetland rehabilitation. Marine and Freshwater Research, 63, 865–877.

Cribb N, Miller C & Seuront L (2012) Site fidelity and behaviour of spinner dolphins (Stenella longirostris) in Moon Reef, Fiji Islands: implications for conservation. Journal of the Marine Biological Association of the United Kingdom. 92: 1793-1798.

Currie, D., McClatchie, S., Middleton, J., Nayar, S. 2012. Biophysical factors affecting the distribution of demersal fish around the head of a submarine canyon off the Bonney Coast, South Australia. PlosOne 7: 1-16. doi: 10.1371/journal.pone.0030138

dos Santos, C.C.N., Leef, M.J., Jones, J.B., Bott, N.J., Giblot-Ducray, D. and Nowak, B.F. (2012) Distribution of Cardicola forsteri eggs in the gills of Southern bluefin tuna (Thunnus maccoyii) (Castelnau, 1872). Aquaculture 344-349: 54-57.

Frazer, H., Ellis, M. and Huveneers, C. (2012). Can a threshold value be used to classify Chondrichthyan reproductive modes: review and validation using an oviparous species. PLoS One (10.1371/journal.pone.0050196).

Hughes, T. P., Baird, A. H., Dinsdale, E. A., Moltschaniwskyj, N. A., Pratchett, M. S., Tanner, J. E. and Willis, B. L. (2012). Assembly rules of reef corals are flexible along a steep climatic gradient. Current Biology. 22: 736-741.

Kemper, C.M., Middleton, J.F., and van Ruth, P.D. (2012) Association between pygmy right whales (Caperea marginata) and areas of high marine productivity off Australia and New Zealand. New Zealand Journal of Zoology. 40: 102-128.

Kovacs, K.M., Aguilar, A., Aurioles, D., Burkanov, V., Campagna, C., Gales, N., Gelatt, T., Goldsworthy, S.D., Goodman, S.J., Hofmeyr, G.J.G., Härkönen, T., Lowry, L.,

Lydersen, C., Sipilä, T., Southwell, C., Stuart, S., Thompson, D., Trillmich, F. (2012). Global threats to pinnipeds. Marine Mammal Science. 28: 414-436 (DOI: 10.1111/j.1748-7692.2011.00479.x)

Linnane, A., Hobday, D., Frusher, S. and Gardner, C. 2012. Growth rates of juvenile southern rock lobster (Jasus edwardsii) estimated through a diver based tag-recapture program. Marine and Freshwater Research 63: 110-118.

Lowther, A.D. and Goldsworthy, S.D. (2012) Head start: Australian sea lion pups gain experience of adult male foraging grounds before weaning. Marine Biology. 159: 2687-2696.

Lowther, A.D., Harcourt, R.G., Goldsworthy, S.D. and Stow, A. (2012). Population structure of adult female Australian sea lions is driven by fine scale foraging site fidelity. Animal Behaviour. 83: 691-701.

Ma, Z., Qin, J.G., Hutchinson, W., Chen, B.N., 2012. Food consumption and selectivity by larval yellowtail kingfish Seriola lalandi cultured at different live feed densities. Aquaculture Nutrition. 19: 523-534.

Macdonald, J. I., McNeil, D. G. and Crook, D. A. (2012), Asteriscus v. lapillus: comparing the chemistry of two otolith types and their ability to delineate riverine populations of common carp Cyprinus carpio. Journal of Fish Biology, 81: 1715–1729.

Mayfield, S., Mundy, C., Gorfine, H., Hart, A. & Worthington, D. 2012. Fifty years of sustained production from the Australian abalone fisheries. Reviews in Fisheries Science, 20: 220-250.

McGarvey, R., Matthews, J. M. 2012. Low-cost estimates of mortality rate from single tag recoveries: addressing short-term trap-happy and trap-shy bias. Canadian Journal of Fisheries and Aquatic Sciences 69(3): 600-611. doi: 10.1139/f2011-175

McIntosh, R.R., Goldsworthy, S.D., Shaughnessy, P.P.D., Kennedy, C.W. and Burch, P. (2012). Estimating pup production in a mammal with an extended and aseasonal breeding season, the Australian sea lion (Neophoca cinerea). Wildlife Research 39(2), 137-148

McIntosh, R.R., Arthur, A.D., Dennis, T., Berris, M., Goldsworthy, S.D., Shaughnessy, P.D. and Teixeira, C.E.P. (2012) Survival estimates for the Australian sea lion: negative correlation of sea surface temperature with cohort survival to weaning. Marine Mammal Science. 29: 84-108.

McIntosh, R.R., Goldsworthy, S.D., Shaughnessy, P.D., Kennedy, C.W. and Burch, P. (2012). Estimating pup production in a mammal with an extended and aseasonal breeding season, the Australian sea lion (Neophoca cinerea). Wildlife Research, 39: 137-48. (doi.org/10.1071/WR10222).

McKenzie J., Page B., Goldsworthy, S.D. and Hindell, M.A. (2012). Behavioural responses of New Zealand fur seals (Arctocephalus forsteri) to darting and the effectiveness of midazolam and tiletamine-zolazepam for remote chemical immobilization. Marine Mammal Science. 29: 241-260.

Middleton, J. F., R. McGarvey, A. Linnane, S.M. Middleton, C.E.P. Teixeira, P. Hawthorn. (2012). Using observations of bottom temperature to calibrate the output of an ocean model. Journal of Marine Systems 91:34-40. doi: 10.1016/j.jmarsys.2011.09.006

Nayar, S., Collings, G., Pfennig, P. and Royal, M., 2012. Managing nitrogen into seagrass meadows near a coastal city: Flow-on from research to Environmental Improvement Plans. Marine Pollution Bulletin 64: 932 - 940.

Patterson, J.S., Nayar, S., Mitchell, J.G., Seuront, L., 2012. A local upwelling controls viral and microbial community structure within South Australian continental shelf waters. Estuarine, Coastal and Shelf Science, 96: 197-208.

Punt, A., McGarvey, R., Linnane, A., Phillips, J., Triantafillos, L. and Feenstra, J. 2012. Evaluating empirical decision rules for southern rock lobster fisheries: A South Australian example. Fisheries Research 115-116: 60-71.

Roberts, S.D., Dixon, C.D. Andreacchio, L. (2012) Temperature dependent larval duration and survival of the western king prawn, Penaeus (Melicertus) latisulcatus Kishinouye, from Spencer Gulf, South Australia. Journal of Experimental Marine Biology and Ecolology 411:14-22 doi: 10.1016/j.jembe.2011.10.022

Rogers P.J., Huveneers C., Page B., Hamer D., Goldsworthy S.D., Mitchell J.G., Seuront L. (2012) A quantitative comparison of the diets of sympatric pelagic sharks in gulf and shelf ecosystems off southern Australia. ICES Journal of Marine Science 69: 1448-1456. (DOI:10.1093/icesjms/fss100).

Saunders, R.J., Fowler, A.J., Gillanders, B. M. (2012) The use of food resources by snapper, Chrysophrys auratus, from northern Spencer Gulf, South Australia. Marine and Freshwater Research 63(8): 680-686. doi: 10.1071/MF11266

Saunders, R.J., Fowler, A.J., Gillanders, B.M. (2012) The spawning dynamics of snapper (Chrysophrys auratus) in northern Spencer Gulf. South Australia New Zealand Journal of Marine and Freshwater Research 46(4): 491-510. doi: 10.1080/00288330.2012.709522

Seuront L (2012) Hydrocarbon contamination and the swimming behavior of the estuarine copepod Eurytemora affinis. In: Marine Ecosystems Intech : 229-266.

Tu, W.C., Mühlhäusler, B.S., James, M.J., Stone, D.A.J., Gibson, R.A., 2012. Dietary alpha-linolenic acid does not enhance accumulation of omega-3 long chain polyunsaturated fatty acids in barramundi (Lates calcarifer). Comp Biochem Physiol B Biochem Mol Biol. 164: 29-37.

Tu W.C., Cook-Johnson, R.J. James M.J., Mühlhäusler B.S., Stone D.A.J., Gibson R.A., 2012. Barramundi (Lates calcarifer) desaturase with Δ6/Δ8 dual activities. Biotechnology Letter. 34: 1283-1296.

van Ruth, P. D., Qin, J. G., and Branford, A. J. (2012) Size dependent competition in centric diatoms as a function of nitrogen and silicon availability. Open Journal of Marine Science 2: 33-42.

Wedderburn, S. D., Hammer, M. P. and Bice, C. M. (2012) Shifts in small-bodied fish assemblages resulting from drought-induced water level recession in terminating lakes of the Murray-Darling Basin, Australia. Hydrobiologia 691, 35-46.

Books/book chaptersLi Y., Benkendorff K, Qin JG and Li X. 2012. Exploring correlations between spawning mediated response and summer mortality in Pacific oyster Crassostrea gigas. In: Jian Qin (ed), Oyster: Physiology, Distribution and Mortality. Nova Science Publishers, New York, pp181-202.

Schapira M & Seuront L (2012) Picophytoplankton community structure in a hypersaline coastal lagoon: role of salinity and links with viral and microbial communities. In: Aloysio da Silva Ferrão Filho (ed.), Cyanobacteria: Toxicity, Ecology and Management. Nova Science Publisher, New York

Zhang X, Li X, Clarke S, and Li X, 2012. The development of Pacific oysters (Crassostrea gigas) produced using cryopreserved sperm. In: Jian Qin (ed), Oyster: Physiology, Distribution and Mortality. Nova Science Publishers, New York, pp1-19.

Conference papers and postersBowyer, J.N., Qin, J.G., Smullen, R.P., Ward, L.R., Stone, D.A.J., 2012. The use of plant and animal oils to improve the sustainable production of yellowtail kingfish, Seriola lalandi. In: Miller, M.R. (Ed.), Report from the Biennial Scientific Meeting of the Australasian Section of the American Oil Chemists Society (AAOCS), Adelaide, November 2011. Nutrients, pp. 372-398

Tanner, J.E. Combining nature and technology to rehabilitate seagrasses in South Australia. Society for Ecological Restoration Australasia Branch annual meeting, Perth, 28-30 Nov 2012.

Internal reportsBice, C., Whiterod, N., Wilson, P., Zampatti, B. and Hammer, M (2012). The Critical Fish Habitat Project: Reintroductions of threatened fish species in the Coorong, Lower Lakes and Murray Mouth region in 2011/12. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000348-1. SARDI Research Report Series No. 646. 43pp.

Bice, C.M., Zampatti, B.P., Jennings, P.R. and Wilson, P. (2012). Fish assemblage structure, movement and recruitment in the Coorong and Lower Lakes in 2011/12.

South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000186-3. SARDI Research Report Series No. 680. 53pp.

Fowler A.J., Steer, M.A., Huveneers, C., Lloyd, M.T. and Jackson, W.B (2012). Understanding the movement of Snapper (Pagrus auratus) and its contribution to the changing spatial structure of South Australia’s Snapper Fishery. Progress report for 2011-12. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. F2012/000366-1. SARDI Research Report Series No. 650. 69pp.

Frahn, K., Nicol, J and Strawbridge, A (2012). Current distribution and abundance of Ruppia tuberosa in the Coorong. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000074-1. SARDI Research Report Series No. 615. 22pp.

Gehrig, S.L., Marsland, K.B., Nicol, J.M., and Weedon, J.T (2012). Chowilla Icon Site – Floodplain Vegetation Monitoring, 2011 Interim Report. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000279-2. SARDI Research Report Series No. 613. 53pp.

Gehrig, S.L., Marsland, K.B., Nicol, J.M. and Weedon, J.T. (2012). Chowilla Icon Site – Floodplain Vegetation Condition Monitoring 2012 Interim Report. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000279-3. SARDI Research Report Series No. 655. 56pp.

Gehrig, S. L., Nicol, J.M., Frahn, K.A. and Marsland K.B (2012). Lower Lakes Vegetation Condition Monitoring – 2011/2012. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000370-4. SARDI Research Report Series No. 640. 68pp.

Gluis, M.G (2012). Oyster basket volumes Coffin Bay, South Australia. Report to the South Australian Oyster Growers Association. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000183-1. SARDI Research Report Series No. 635. 12pp.

Goldsworthy, S.D., Page, B., Lowther, A., Shaughnessy, P.D. (2012). Maintaining the monitoring of pup production at key Australian sea lion colonies in South Australia (2010/11). Final report to the Australian Marine Mammal Centre. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000665-2. SARDI Research Report Series No. 601. 64pp.

Ham, J., Riddell, H. and Clarke, S (2012). Marine Innovation Southern Australia. The first seven years: a foundation for the future. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000435-1. SARDI Research Report Series No. 642. 98pp.

Leigh, S. J., Gehrig, S. L., Wilson, P. J., Zampatti, B. P. and Nicol, J. M (2012). Intervention monitoring of fish and fish habitats within the Katarapko Anabranch system

(‘Katfish’ Demonstration Reach): before intervention surveys 2010 and 2011. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000994-2. SARDI Research Report Series No. 634. 46pp.

Leigh, S. J. and Zampatti, B. P (2012). Chowilla Icon Site – Fish Assemblage Condition Monitoring 2011. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2008/000907-3. SARDI Research Report Series No. 597. 31pp.

Li, X (2012). Scope of Options to Establish Gamete Cryobanking Services to Genetic Improvement Programs in Australian Aquaculture Industry. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000027-1. SARDI Research Report Series No. 636. 84pp.

McGarvey, R., Burch, P. and Feenstra, J.E. (2012). Management Strategy Evaluation for South Australian Snapper. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000226-1. SARDI Research Report Series No. 32p.

Nicol, J.M (2012). Understory Vegetation Monitoring of Chowilla Environmental Watering Sites 2008-12. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000632-2. SARDI Research Report Series No. 654. 64pp.

Schmarr, D.W., Mathwin, R., Cheshire, D.L. and McNeil, D.G. (2012). Aquatic ecology assessment and analysis of the Cooper Creek catchment: Lake Eyre Basin, South Australia. Report to the South Australian Arid Lands Natural Resource Management Board. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000442-1. SARDI Research Report Series No. 679. 175pp.

Wilson, P. J., Gehrig, S. L., Leigh, S. J., Bice, C., and Zampatti, B. P. (2012). Fish assemblages, instream habitats and fish-habitat associations in the Katarapko Anabranch system (‘Katfish’ Demonstration Reach): ‘Before’ intervention monitoring 2012. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000441-1. SARDI Research Report Series No. 669. 46pp.

Wilson, P., Leigh, S., Bice, C. and Zampatti, B. (2012). Chowilla Icon Site Fish Assemblage Condition Monitoring 2012. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2008/000907-4. SARDI Research Report Series No. 674. 48pp.

Ye, Q., Bucater, L., Short, D. and Earl, J (2012). Coorong fish condition monitoring 2008–2012: The black bream (Acanthopagrus butcheri), greenback flounder (Rhombosolea tapirina) and smallmouthed hardyhead (Atherinosoma microstoma) populations. South Australian Research and Development Institute (Aquatic Sciences),

Adelaide. SARDI Publication No. F2011/000471-2. SARDI Research Report Series No. 649. 72pp.

Ye, Q., Bucater, L., Short, D. and Livore, J. (2012). Fish response to barrage releases in 2011/12, and recovery following the recent drought in the Coorong. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000357-1. SARDI Research Report Series No. 665. 81pp.

Zampatti, B.P., Bice, C.M. and Jennings, P.R (2012). Fish assemblage response and fishway effectiveness at Goolwa, Tauwitchere and Hunters Creek Barrages in 2010/11. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000186-2. SARDI Research Report Series No. 605. 66pp.

Client reportsBott, N.J., Giblot-Ducray, D. and Sierp, M. (2012). Development of a qPCR assay for the Black-striped Mussel, Mytilopsis sallei. Report prepared for Commonwealth Department of Agriculture, Fisheries and Forestry & Biosecurity SA. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000436-1. SARDI Publication No. 676. 18pp.

Bott, N.J. and Giblot-Ducray, D (2012). Development of a qPCR assay for the Pacific Oyster, Crassostrea gigas. Report prepared for Biosecurity SA. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000210-1. SARDI Research Report Series No. 641. 12pp

Burch, P. and Ward, T.M (2012). Estimating historical fishery catches/effort from preliminary sanctuary zone scenarios in South Australia’s marine parks. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000307-2. SARDI Research Report Series No. 599. 120pp.

Chick, R.C. and Mayfield, S (2012). Central Zone Abalone (Haliotis laevigata & H. rubra) Fishery. Fishery Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000611-4. SARDI Research Report Series No. 652. 67pp.

Dent, J., Mayfield, S., Burch, P., Gorman, D. and Ward, T.M (2012). Distribution, harvestable biomass and fisheries biology of Katelysia spp. in the South Australian commercial mud-cockle fishery. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000263-2. SARDI Research Report Series No. 595. 23pp.

Deveney, M.R., Jones, J.B. and Nowak, B.F (2012). Biosecurity risk assessment and development of standardised mitigation for tuna and finfish aquaculture. Final Report for the Fisheries Research and Development Corporation. South Australian Research and

Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000343-1. SARDI Research Report Series No. 561. 103pp.

Dixon, C.D., Hooper, G.E and Burch, P (2012). Gulf St Vincent Prawn, Penaeus (Melicertus) latisulcatus, Fishery 2010/11. Fishery Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000782-5. SARDI Research Report Series No. 631. 112pp.

Dixon, C. D., Hooper, G.E., Burch, P (2012). Spencer Gulf Prawn Penaeus (Melicertus) latisulcatus Fishery 2010/11. Fishery Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000770-5. SARDI Research Report Series No. 603. 118pp.

Dixon, C.D., Rodgers, G.G. and Hooper, G.E (2012). Blue Crab (Portunus armatus) Fishery 2010/11. Fishery Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000729–8. SARDI Research Report Series No. 604. 75pp.

Ferguson, G (2012). The South Australian Lakes and Coorong Fishery. Fishery Stock Status Report for PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000669-3. SARDI Research Report Series No. 598. 17pp.

Ferguson, G.J. (2012). The South Australian Lakes and Coorong Fishery. Fishery Stock Status Report for PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000669-4. SARDI Research Report Series No. 675. 17pp.

Ferguson, G. J. and Ye, Q (2012). Stock Assessment of Golden perch (Macquaria ambigua). Stock Assessment Report for PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. F2007/01051-1. SARDI Research Report Series No. 656. 55pp.

Fowler AJ, McGarvey R, Steer MA, Feenstra JE (2012). South Australian Marine Scalefish Fishery – Stock Status Report 2011/12. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide, F2007/000565-7, SARDI Research Report Series No. 681. Pp 44.

Gorman, D., Hooper, G.E. and Dixon, C.D (2012). West Coast Prawn, Penaeus (Melicertus) latisulcatus Fishery 2011. Fishery Status Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000772-5. SARDI Research Report Series No. 638. 22pp.

Huveneers, C., Rogers, P.J., Beckmann, C., Semmens, J., Bruce, B., and Seuront, L (2012). Effects of a cage-diving operation on the fine-scale movement of white sharks (Carcharodon carcharias). Final Report to the Department of Environment, Water and Natural Resources Wildlife Conservation Fund and the Nature Foundation of South Australia. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000417-1. SARDI Research Report Series No. 657. 48pp.

Huveneers, C., Rogers, P.J., Drew, M (2012). Residency and movements of whaler sharks (Carcharhinus spp.) in Gulf St Vincent. Final Report to the Nature Foundation of South Australia. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000246-1. SARDI Research Report Series No. 664. 35pp.

Izzo, C., Gillanders, B.M. and Ward, T.M. (2012). Movement patterns and stock structure of Australian sardine (Sardinops sagax) off South Australia and the East Coast: implications for future stock assessment and management. Final Report to the Fisheries Research and Development Corporation. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000487-1. SARDI Research Report Series No. 611. 102pp.

Linnane, A., Chick, R.C., Walker, T., Trinnie, F. and D. Reilly. (2012). Victorian Rock Lobster and Giant Crab Fisheries Status Report 2011/2012. Fishery Status Report to Fisheries Victoria. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000434-1. SARDI Research Report Series No. 663. 36pp.

Linnane, A., McGarvey, R., Feenstra, J. and P. Hawthorne (2012). Southern Zone Rock Lobster (Jasus edwardsii) Fishery 2010/11. Fishery Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000276-5. SARDI Research Report Series No. 645. 89pp.

Linnane, A., McGarvey, R., Feenstra, J. and Hawthorne, P. (2012). Southern Zone Rock Lobster (Jasus edwardsii) Fishery Status Report 2011/12. Status Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000715-6. SARDI Research Report Series No. 677. 23pp.

Linnane, A., McGarvey, R., Feenstra, J and M. Hoare (2012). Northern Zone Rock Lobster (Jasus edwardsii) Fishery 2010/11. Fishery assessment report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000320-5. SARDI Research Report Series No. 644. 78pp.

Linnane, A., McGarvey, R., Feenstra, J. and Hoare, M. (2012). Northern Zone Rock Lobster (Jasus edwardsii) Fishery Status Report 2011/12. Status Report to PIRSA

Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000714-6. SARDI Research Report Series No. 678. 22pp.

Linnane, A. J., Walker, T. I., Punt, A. E., Green, B. S., McGarvey, R., Feenstra, J. E., Troynikov, V. S., Trinnie, F. I., Gardner, C., Middleton, J. F., Reilly, D. J., Hobday, D. K. and Levings, A. H. (2012). Sustainability of the rock lobster resource in south-eastern Australia in a changing environment: implications for assessment and management. Draft final report to Fisheries Research and Development Corporation. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000440-1. SARDI Research Report Series No. 668. 278pp.

Loo, M. G. K. and McKay, A. (2012). Yellowtail Kingfish (Seriola lalandi) Aquaculture Environmental Monitoring Program 2010/11 Report for Cleanseas Aquaculture Growout Pty Ltd, Arno Bay, South Australia: Licence Numbers AQ00017, AQ00018, AQ00032, FF00036, FF00037 and FB00078. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000207-3. SARDI Research Report Series No. 608. 24pp.

Loo, M. G. K. and McKay, A. (2012). Yellowtail Kingfish (Seriola lalandi) Aquaculture Environmental Monitoring Program 2010/11 Report for Cleanseas Aquaculture Growout Pty Ltd, Boston Bay, South Australia: Licence Numbers AQ00015, FF00090, FF00084, FF00085 and AQ00139. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000207-3. SARDI Research Report Series No. 607. 21pp.

Loo, M. G. K. and McKay, A. (2012). Yellowtail Kingfish (Seriola lalandi) Aquaculture Environmental Monitoring Program 2010/11 Report for Cleanseas Aquaculture Growout Pty Ltd, Arno Bay, South Australia: Licence Numbers AQ00017, AQ00018, AQ00032, FF00036, FF00037 and FB00078. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000207-3. SARDI Research Report Series No. 608. 24pp.

Loo, M. G. K. and McKay, A (2012). Yellowtail Kingfish (Seriola lalandi) Aquaculture Environmental Monitoring Program 2010/11 Report for Southern Star Aquaculture Pty Ltd, Fitzgerald Bay, South Australia: Licence Number FF00030. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. 2010/000207-3. SARDI Research Report Series No 610. 18pp.

Loo, M. G. K. and McKay, A. (2012). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2011 Report: Tony's Tuna International Pty Ltd, Licence Numbers AQ00027, AQ00054, AQ00125 and AQ00169. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-4. SARDI Research Report Series No. 616. 19pp.

Loo, M. G. K. and McKay, A. (2012). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2011 Report: Australian Tuna Fisheries Pty Ltd, Licence Number AQ00047. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-4. SARDI Research Report Series No. 617. 19pp.

Loo, M. G. K. and McKay, A. (2012). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2011 Report: Australian Fishing Enterprises Pty Ltd, Licence Number AQ00048. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-4. SARDI Research Report Series No. 618. 19pp.

Loo, M. G. K. and McKay, A. (2012). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2011 Report: AJKA Pty Ltd, Licence Numbers AQ00055 and AQ00024. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-4. SARDI Research Report Series No. 619. 19pp.

Loo, M. G. K. and McKay, A. (2012). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2011 Report: Marnikol Fisheries Pty Ltd, Licence Number AQ00057. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-4. SARDI Research Report Series No. 620. 19pp.

Loo, M. G. K. and McKay, A. (2012). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2011 Report: Sekol Pty Ltd and Blaslov Fishing Pty Ltd, Licence Numbers AQ00060 and AQ00059. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-4. SARDI Research Report Series No. 621. 19pp.

Loo, M. G. K. and McKay, A. (2012). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2011 Report: Tony's Tuna International Pty Ltd, Licence Numbers AQ00080, AQ00053 and AQ00062. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-4. SARDI Research Report Series No. 622. 19pp.

Loo, M. G. K. and McKay, A. (2012). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2011 Report: SAMS Sea Farm Pty Ltd and Australian Fishing Enterprises, Licence Numbers AQ00112, AQ00113 and FB00008. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc. South Australian Research and Development Institute (Aquatic

Sciences), Adelaide. SARDI Publication No. F2009/000585-4. SARDI Research Report Series No. 623. 19pp.

Loo, M. G. K. and McKay, A. (2012). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2011 Report: Australian Fishing Enterprises Pty Ltd, Licence Number FB00079. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-4. SARDI Research Report Series No. 624. 19pp.

Nayar, S., Clarke, S., Stone, D., Gurgel, C., Qin, J.G., Bott, K., Knott, J., Rodda, K. and Bansemer, M. (2012). Development of a sustainable South Australian macroalgal aquaculture industry. Report prepared for the Department of Further Education, Employment, Science and Technology (DFEEST), Government of South Australia

Roberts, S.D., Hayward, C.J. and Clarke, S.M. (eds) (2012). Addressing key aquatic animal health issues limiting production of Australian yellowtail kingfish (Seriola lalandi) and hatchery-reared southern bluefin tuna (Thunnus maccoyii) industries. Final report to the Seafood CRC, Project No. 2008/711. SARDI Aquatic Sciences Publication No. F2012/000198-1, SARDI Research Report Series No. 648, Adelaide

Steer, M.A., McGarvey, R., Fowler, A.J., Burch, P., Feenstra, J.E., Jackson, W.B. and Lloyd, M.T (2012). Southern Garfish (Hyporhamphus melanochir) Fishery. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000720-3. SARDI Research Report Series No. 658. 76pp.

Stobart, B., Mayfield, S., Dent, J. and Matthews, D.J (2012). Western Zone Abalone (Haliotis laevigata & H. rubra) Fishery (Region B). Fishery Stock Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000389-2. SARDI Research Report Series No. 661. 32pp.

Stobart, B., Mayfield, S., Dent, J., Matthews, D.J. and Chick, R.C (2012). Western Zone Abalone (Haliotis rubra & H. laevigata) Fishery (Region A). Fishery Stock Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000561-4. SARDI Research Report Series No. 660. 118pp.

Tanner, J.E., Theil, M. and Fotheringham, D. (2012). Seagrass Condition Monitoring: Yankalilla Bay, Light River and Encounter Bay. Final report prepared for the Adelaide and Mount Lofty Ranges Natural Resources Management Board. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000139-1. SARDI Research Report Series No. 653. 29pp.

Thwaites, L. A (2012). Glenelg River Acoustic Range Finding Experiment. A Technical Report for the Glenelg Hopkins Catchment Management Authority. South Australian

Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000122-1. SARDI Research Report Series No. 630. 14pp.

Thwaites, L. A. and Fredberg, J. F (2012). 2011 baseline survey of the fish assemblage of Warriparinga Wetland and the adjacent Sturt River- implications for native and invasive fish species management. A summary report for the Marion City Council. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000520-1. SARDI Research Report Series No. 596. 30pp.

Ward, T.M. and Burch P (2012). Historical commercial fishery catches/effort in draft sanctuary and habitat protection zones in South Australia’s Marine Parks. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000307-3. SARDI Research Report Series No. 600. 120pp.

Ward, T.M. and Burch P (2012). Historical commercial fishery catches/effort in revised draft sanctuary and habitat protection zones in South Australia’s Marine Parks. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000307-4. SARDI Research Report Series No. 633. 121pp.

Ward, T.M. and Burch, P. (2012). Historical commercial fishery catches/effort in draft sanctuary and habitat protection zones in South Australia’s Marine Parks. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000307-5. SARDI Research Report Series No. 639. 117pp.

Ward, T.M. and Burch, P. (2012). Revised estimates of historical commercial fishery catches/effort in draft sanctuary and habitat protection zones in South Australia’s Marine Parks. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000307-6. SARDI Research Report Series No. 642. 120pp.

Ward, T.M., Burch, P., Currie, D.R., Ferguson, G., Gorman, D., and Begg, G.A. (2012). Revised estimates of historical commercial fishery catches/effort in draft sanctuary and habitat protection zones in South Australia’s Marine Parks: updated assessments. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000307-7. SARDI Research Report Series No. 662. 84pp.

Ward, T.M., Burch, P., Gorman, D. and Begg, G.A. (2012). Estimates of historical commercial fishery catches/effort in final sanctuary and habitat protection zones in South Australia’s Marine Parks. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000307-8. SARDI Research Report Series No. 670. 77pp.

Ward T.M., P. Burch and A.R. Ivey. (2012). South Australian Sardine (Sardinops sagax) Fishery: Stock Assessment Report 2012. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000765-4. SARDI Research Report Series No. 667. 101pp.

Ward, T.M., Ivey, A. and Burch, P. (2012). Effectiveness of an industry Code of Practice in mitigating the operational interactions of the South Australian Sardine Fishery with the short-beaked common dolphin (Delphinus delphis). Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000726-3. SARDI Research Report Series No. 666. 27pp.

Ward, T.M., Lyle, J., Keane, J.P., Begg, G.A., Hobsbawn. P., Ivey. A.R., Sakabe. R. Steer, M.A (2012). Commonwealth Small Pelagic Fishery: Fishery Assessment Report 2011. Report to the Australian Fisheries Management Authority. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000270-3. SARDI Research Report Series No. 614. 98pp.

Westergaard, S. and Ye, Q. (2012). Captive spawning trials of river blackfish (Gadopsis marmoratus) during 2010/11 efforts toward savings local genetic assets with recognised conservation significance from the South Australian Murray-Darling Basin. Report to Department of Environment, Water and Natural Resources. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000463-1. SARDI Research Report Series No. 672. 15pp.

Zampatti, B. and Mallen-Cooper, M (2012). Innamincka Causeway - Fish Passage Scoping Study. Report prepared for South Australian Department of Environment and Natural Resources. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000163-1. SARDI Research Report Series No. 637. 26pp.

Zhang, W., Nayar, S., Franco, C., Clarke, S.R., Capelle, E., Aitchison, T., Trout. N., Tan, L.F., Su, P., Kupke, B., Bott, K., Braley, M., Clarke, S., Thomas,R., Rasmussen, P. and Tham, R. (2012). Developing a proof-of-concept facility for microalgal biodiesel feedstock and value-added products to pioneer a sustainable South Australian biofuels industry. Final report prepared for the Department of Further Education, Employment, Science and Technology (DFEEST), Government of South Australia

2011

Scientific PapersBenavides, M.T., Feldheim, K.A., Duffy, C.A., Wintner, S., Braccini, M., Boomer, J., Huveneers, C., Rogers, P., Mangel, J., Cartamil, D.P., and Chapman, D.D. (2011). Southern Hemisphere phylogeography of the copper shark (Carcharhinus brachyurus). Marine and Freshwater Research, 62: 861–869

Bice, C. M. and Zampatti, B. P. (2011) Engineered water level management facilitates recruitment of non-native common carp, Cyprinus carpio, in a regulated lowland river. Ecological Engineering 37, 1901-1904.

Bierman, P., Lewis, M., Ostendorf, B. and Tanner, J. (2011). A review of methods for analysing spatial and temporal patterns in coastal water quality. Ecological Indicators, 11: 103-114

Burch, P., Mayfield, S., Stobart, B., Chick, R.C. & McGarvey, R. 2011. Estimating species-specific catch rates in a mixed-species dive fishery. Journal of Shellfish Research, 30: 425-436.

Capa M, Hutchings P, Aguado MT and Bott NJ 2011. Phylogeny of Sabellidae (Annelida) and relationships with related taxa inferred from morphology and multiple genes. Cladistics 27: 449-469.

Chandrapavan, A., Gardner, C., Green, B., Linnane, A. and Hobday, D. 2011. Improving marketability through translocation: a lobster case study from southern Australia. ICES Journal of Marine Science 68: 1842–1851.

Chapperon C & Seuront L (2011) Behavioral thermoregulation in a tropical gastropod: links to climate change scenarios. Global Change Biology, 17, 1740-1749.

Chapperon C & Seuront L (2011) Space-time variability in environmental thermal properties and snail thermoregulatory behaviour. Functional Ecology, 25, 1040-1050.

Chapperon C & Seuront L (2011) Heat stress in the intertidal: the importance of snail thermoregulatory behavior. Newsletter of the Malacological Society of Australasia, 140, 10-11.

Chapperon C & Seuront L (2011) Variability in the motion behaviour of intertidal gastropods: ecological and evolutionary perspectives. Journal of the Marine Biological Association of the United Kingdom , 91, 237-244.

Cribb, T.H., Adlard, R.D., Hayward, C.J., Bott, N.J., Ellis, D., Evans, D., Nowak, B.F. (2011) The life cycle of Cardicola forsteri (Trematoda: Aporocotylidae), a pathogen of ranched southern bluefin tuna, Thunnus maccoyii, International Journal for Parasitology, 41(8):861-70

Currie, D.R., Dixon, C.D., Roberts, S.D., Hooper, G.E., Sorokin, S.J. and Ward, T.M. (2011). Relative importance of environmental gradients and historical trawling effort in determining the composition and distribution of benthic macro-biota in a large inverse estuary. Fisheries Research: 107(1-3). pp184-195. doi: 10.1016/j.fishres.2010.11.003

Deveney, M.R. and Whittington, I.D. (2011). Revision of Dioncopseudobenedenia Yamaguti, 1965 including the description of D. ancoralis sp. n. (Monogenea: Capsalidae) from Pacific acanthuroid teleosts. Folio Parasitologica 58(4): 257-272

Dowsett, N., Hallegraeff, G., van Ruth, P., van Ginkel, R., McNabb, P., Hay, B., O’Connor, W., Kiermeier, A., Deveney, M., and McLeod, C. (2011) Uptake, Distribution and Depuration of Paralytic Shellfish Toxins from Alexandrium minutum in Australian Greenlip Abalone, Haliotis laevigata. Toxicon 58: 101-111.

Earl J, Fowler AJ, Dittmann (2011) Temporal variation in feeding behaviour and trophic ecology of the temperate hemiramphid, Hyporhamphus melanochir. Environmental Biology of Fishes 90(1) pp71-83 DOI 10.1007/s10641-010-9719-5

Einoder, L.D., Page, B., Goldsworthy, S.D., De Little, S.C. and Bradshaw, C.J.A. (2011). Exploitation of distant Antarctic waters and close neritic waters by short-tailed shearwaters breeding in South Australia. Austral Ecology 36: 461-475. doi:10.1111/j.1442-9993.2010.02176.x

Ferguson, G. J., Ward, T. M., and Gillanders, B. M. 2011. Otolith shape and elemental composition: Complementary tools for stock discrimination of mulloway (Argyrosomus japonicus) in southern Australia. Fisheries Research, 110: 75-83.

Fowler AJ, McGlennon D (2011) Variation in productivity of a key snapper Chrysophrys auratus, fishery related to recruitment and fleet dynamics. Fisheries Management and Ecology. 18:411-423. doi: 10.1111/j.1365-2400.2011.00793.x.

Frère, C., Seddon, J., Palmer, C., Porter, L. and Parra, G.J. 2011. Multiple lines of evidence for an Australasian geographic boundary in the Indo-Pacific humpback dolphin (Sousa chinensis): population or species divergence? Conservation Genetics 1-6. Conservation Genetics (29 June 2011), pp. 1-6, doi:10.1007/s10592-011-0242-9

Gill, P.C., Morrice, M.G., Page, B., Pirzl, R., Levings, A.H. and Coyne, M. (2011). Blue whale habitat selection and within-season distribution in a regional upwelling system off southern Australia. Marine Ecology Progress Series 421: 243-263.

Gorman, D., Mayfield, S., Ward, T.M. & Burch, P. 2011. Optimising harvest strategies in a multi-species bivalve fishery. Fisheries Management and Ecology, 18: 270-281.

Gutteridge, A.N., Bennett, M.B., Huveneers, C. and Tibbetts, I.R. (2011). Assessing the overlap between the diet of a coastal shark and the surrounding prey communities in a sub-tropical embayment. Journal of Fish Biology, 78: 1405–1422

Hayward CJ, Svane I, Lachimpadi SK, Itoh N, Bott NJ, Nowak BF. 2011. Sea lice infections of wild fishes near ranched southern bluefin tuna (Thunnus maccoyii) in South Australia. Aquaculture 320: 178-182.

Hutson, K.S., Brock, E.L., Steer, M.A. (2011) Spatial variation in parasite abundance: evidence of geographical population structuring in southern garfish Hyporhamphus melanochir. Journal of Fish Biology: 78(1) pp166-182. doi: 10.1111/j.1095-8649.2010.02849.x

Huveneers, C., Otway, N.M., Harcourt, R.G. and Ellis, M. (2011). Quantification of the maternal-embryo nutritional relationship of elasmobranchs: case study of wobbegong sharks (genus Orectolobus) in eastern Australia. Journal of Fish Biology, 78: 1375–1389.

Ismail HN, Qin JG & Seuront L (2011) Regulation of life history in the brackish cladoceran Daphniopsis australis (Sergeev & Willams) by temperature and salinity. Journal of Plankton Research , 33, 763-777.

Ismail HN, Qin JG & Seuront L (2011) Dietary responses of the brackish cladoceran Daphniopsis australis fed on different marine microalgae. Journal of Experimental Marine Biology and Ecology, 409, 275-282.

Jeffries TC, Seymour JR, Newton K, Smith RJ, Seuront L & Mitchell JG (2011) Increases in the abundance of microbial genes encoding halotolerance and photosynthesis along a sediment salinity gradient. Biogeosciences Discussion, 8, 7551-7574.

Jeffries T, Seymour JR, Gilbert J, Dinsdale L, Newton K, Leterme SC, Roudnew B, Smith RJ, Seuront L & Mitchell JG. Substrate type determines metagenomic profiles from diverse chemical habitats. PLoS ONE, 6(9):e25173.

Jeffries T., Seymour J., Gilbert J., Dinsdale E., Newton K., Leterme S.C., Roudnew B., Smith R., Seuront L. & Mitchell J.G. (2011) Environmental history defines microbial communities in spatially close, but physically disparate environments. PLoS ONE 6(9): e25173. doi:10.1371/journal.pone.0025173 [IF 4.35, ERA A]

Kovacs KM, Aguilar A, Aurioles D, Burkanov V, Campagna C, Gales N, Gelatt T, Goldsworthy SD, Goodman SJ, Hofmeyr GJG, Härkönen T, Lowry L, Lydersen C, Sipilä T, Southwell C, Stuart S, Thompson D, Trillmich F (2012) Global threats to pinnipeds. Marine Mammal Science. 28: 414-436 DOI: 10.1111/j.1748-7692.2011.00479.x

Linnane, A., Penny, S., Hoare, M. and Hawthorne, P. 2011. Assessing the effectiveness of size limits and escape gaps as management tools in a commercial rock lobster (Jasus edwardsii) fishery. Fisheries Research 111: 1–7.

Lowther AD, and Goldsworthy SD (2011) Maternal strategies of the Australian sea lion Neophoca cinerea at Dangerous Reef, South Australia. Australian Journal of Zoology. 59: 54-62

Lowther, A.D. and Goldsworthy, S.D. (2011). Detecting alternate foraging ecotypes in Australian sea lion (Neophoca cinerea) colonies using stable isotope analysis. Marine Mammal Science. 27 (3): 567-586 DOI: 10.1111/j.1748-7692.2010.00425.x

Lowther, A.D., Harcourt, R.G., Hamer, D. and Goldsworthy, S.D. (2011). Creatures of habit: foraging habitat fidelity of adult female Australian sea lions. Marine Ecology Progress Series. 443: 249–263. doi: 10.3354/meps09392

Mayfield, S., Mundy, C. Gorfine, H. (2012) Fifty Years of Sustained Production from the Australian Abalone Fisheries. Reviews in Fisheries Science 20 (4): 220-250. doi: 10.1080/10641262.2012.725434

Mayfield, S., McGarvey, R. H.K. Gorfine, H. Peeters; P. Burch & S. Sharma. 2011. Survey estimates of fishable biomass following a mass mortality in an Australian molluscan fishery. Journal of Fish Diseases 34: 287–302

Mayfield, S., Chick, R.C., Carlson, I.J. & Ward, T.M. 2011. Invertebrate dive fisheries can be sustainable: 40 years of production from a greenlip abalone fishery off southern Australia. Reviews in Fisheries Science, 19: 216-230.

McGarvey, R., P. Burch, J. E. Feenstra. 2011. Use of management strategy comparison scatterplots to identify clusters of high performing strategies. Fisheries Management and Ecology 18: 349–359.

Middleton, J.F. McGarvey, R., Linnane, A., Middleton, S.M., Teixeira, C.E.P and Hawthorne, P. 2011. Using observations of bottom temperature to calibrate the output of an ocean model. Journal of Marine Systems 91: 34–40. . doi: 10.1016/j.jmarsys.2011.09.006

Morrongiello, John R., Beatty, Stephen J., Bennett, James C., Crook, David A., Ikedife, David N. E. N., Kennard, Mark J., Kerezsy, Adam, Lintermans, Mark, McNeil, Dale G., Pusey, Bradley J., and Rayner, Thomas (2011). Climate change and its implications for Australia’s freshwater fish. Marine and Freshwater Research 62, 1082–1098

Munoz,G.and Bott,N.J. (2011). A new species of Prosorhynchoides (Trematoda, Bucephalidae) from the intertidal rocky zone of central Chile. Acta Parasitologica 56: 140-146.

Nowak BF, Hayward CJ, Gonzalez L, Bott NJ (ME&E), Lester RJG. 2011. Sea lice infections of farmed salmonids in Australia. Aquaculture 320: 171-177.

Palmer, C., Murphy, S. A., Thiele, D., Parra, G. J., Robertson, K. M., Beasley, I. & Austin, C. M. 2011. Analysis of mitochondrial DNA clarifies the taxonomy and distribution of the Australian snubfin dolphin (Orcaella heinsohni) in northern Australian waters. Marine and Freshwater Research 62: 1303-1307

Parra, G. J., Corkeron, P. J. & Arnold, P. 2011. Grouping and fission–fusion dynamics in Australian snubfin and Indo-Pacific humpback dolphins. Animal Behaviour 82, 1423-1433.

Partridge, G.J., D.D. Benetti., J.D. Stieglitz., J. Hutapea., A. McIntyre., B. Chen., W. Hutchinson., V.P. Scholey. 2011. The effect of a 24-hour photoperiod on the survival, growth and swim bladder inflation of pre-flexion yellowfin tuna (Thunnus albacares) larvae. Aquaculture 318, 471 – 474.

Petrusevics, P., J.A.T. Bye, J. Luick, and C. Teixeira (2011) Summer sea surface temperatures and elevated chlorophyll-a in the entrance to Spencer gulf, South Australia. Continental Shelf Research, 31, 849-856.

Phillips, B.F., Melville-Smith, R., Linnane, A., Gardner, C., Walker, T. and Liggins, G. (2011). ‘Are the spiny lobster fisheries in Australia sustainable?’. A manuscript. Journal of the Marine Biological Association of India 52 (2): 139-161.

Prairie J.C. Franks P.J.S, Jaffe J.S., Doubell M.J. and Yamazaki H. (2011). Physical and biological controls of vertical gradients in phytoplankton. Limnology and Oceanography: Fluids and environments. Volume 1: 75–90. DOI: 10.1215/21573698-1267403.

Przeslawski, R., Currie, D.R., Sorokin, S.J., Ward, T.M., Althaus, F. and Williams, A. (2011). Utility of a spatial habitat classification system as a surrogate of marine benthic community structure for the Australian margin. ICES Journal of Marine Science , 68: 1954–1962.

Przeslawski, R, Williams, A, Ward, T.M. Sorokin, S., Currie, D. and Althaus, F. (2011). The utility of a seascape habitat classification system as a surrogate of community structure. ICES Journal of Marine Science doi:10.1093/icesjms/fsr 106 68 (9) 1954-1962

Punt, André E., Richard McGarvey, Adrian Linnane, Justin Phillips, Lianos Triantafillos, John Feenstra. 2011. Evaluating empirical decision rules for southern rock lobster fisheries: A South Australian example. Fisheries Research 115-116: 60-71

Seuront L. (2011) Behavioral fractality in marine copepods: endogenous rhythms vs. exogenous stressors. Physica A, 309, 250-256.

Seuront L (2011) Obituary. Benoît B. Mandelbrot (1924-2010). Journal of Plankton Research, 33, 983-988.

Seuront L (2011) Hydrocarbon contamination decreases mating success in a marine planktonic copepod. PLoS ONE, 6(10):e26283

Seuront L & Cribb N (2011) Fractal analysis reveals pernicious stress levels related to boat presence and type in the Indo-Pacific bottlenose dolphin, Tursiops aduncus. Physica A. 390, 2333–2339

Shaughnessy, P.D., Goldsworthy, S.D., Hamer, D.J., Page, B., McIntosh, R.R. (2011). Australian sea lions Neophoca cinerea at colonies in South Australia: distribution and abundance, 2004 to 2008. Endangered Species Research. 13:87-98.

Simberloff, D. and 141 others including Deveney, M. 2011 Non-natives: 141 scientists object. Nature 475, 36 (2011); doi: 10.1038/475036a Nature 474, 153–154

Speed, C.W., Meekan, M.G., Field, I.C., McMahon, C.R., Stevens, J.D., McGregor, K.F., Huveneers, C., Berger, Y., Bradshaw, C.J.A. (2011). Spatial and temporal niche partitioning in coastal reef shark aggregations. Marine Ecology Progress Series, 429: 261–275.

Spilmont N, Seuront L, Meziane T & Welsh D (2011) There’s more to the picture than meets the eye: sampling microphytobenthos in a heterogeneous environment. Estuarine, Coastal and Shelf Science, 95, 470-476.

Tanner, J.E. (2011). Utilisation of the invasive alga Caulerpa taxifolia as habitat by faunal assemblages in the Port River-Barker Inlet Estuary, South Australia. Estuaries and Coasts. 34:831-838.

van Dongen–Vogels, Virginie, Justin R. Seymour, John F. Middleton, Jim G. Mitchell and Laurent Seuront 2011: Shifts in picophytoplankton community structure influenced by changing upwelling conditions. Estuarine, Coastal and Shelf Science, 109, 81-90.

van Dongen–Vogels V, Seymour JR, Middleton JF, Mitchell JG & Seuront L (2011) Local physical events drive picophytoplankton space-time dynamics in South Australian continental shelf waters. Journal of Plankton Research, 33, 1825-1841.

van Dongen-Vogels, Virginie, Justin R. Seymour, John F. Middleton, Jim G. Mitchell and Laurent Seuront “Influence of local physical events on picophytoplankton spatial and temporal dynamics in south australian continental shelf waters” Journal of Plankton Research 33 (12): 1825–1841

Vilstrup, J., S. Ho, A. Foote, P. Morin, D. Kreb, M. Krutzen, G. J. Parra, K. Robertson, R. de Stephanis, P. Verborgh, E. Willerslev, L. Orlando, and M. T. Gilbert. 2011. Mitogenomic phylogenetic analyses of the Delphinidae with an emphasis on the Globicephalinae. BMC Evolutionary Biology 11:65.

Wang, H., Li, X., Wang, M., Clarke, S., Gluis, M., Zhang, Z., 2011. Effects of larval cryopreservation on subsequent development of the blue mussels, Mytilus galloprovincialis Lamarck. Aquaculture Research 42: 1816-1823

Ward, T.M., Burch, P., McLeay, L.J. and Ivey, A.R. (2011). Use of the Daily Egg Production Method for stock assessment of sardine, Sardinops sagax; lessons learned over a decade of application off Southern Australia. Reviews in Fisheries Science 19(1), 1-20.

Ward, T.M.; Ivey, A.R. (2011) Assessing Options for Using a Continuous Underway Fish Egg Sampler to Enhance Dedicated Daily Egg Production Studies Conducted from Small Research Vessels. Open Fish Science Journal 4: 67-81.

Zhao C, Li X, Luo S, Chang Y, 2011. Assessments of lysosomal membrane responses to stresses with neutral red retention assay and its potential application in the improvement of bivalve aquaculture. African Journal of Biotechnology 10: 13968-13973.

Technical PapersBeckmann, C., Huveneers, C. 2011. Notoraja sticta. In: IUCN 2011. IUCN Red List of Threatened Species. www.redlist.org

Bigman, J., Ebert, D., Huveneers, C.2011. Centrophorus westraliensis. In: IUCN 2011. IUCN Red List of Threatened Species. www.redlist.org

Heard, M., Huveneers, C. 2011. Parascyllium elongatum. In: IUCN 2011. IUCN Red List of Threatened Species. www.redlist.org

Heard, M., Huveneers, C. 2011. Dentiraja flindersi. In: IUCN 2011. IUCN Red List of Threatened Species. www.redlist.org

Heaven, C., Huveneers, C. 2011. Pavoraja arenaria. In: IUCN 2011. IUCN Red List of Threatened Species. www.redlist.org

Robbins, R., Huveneers, C. 2011. Okamejei leptoura. In: IUCN 2011. IUCN Red List of Threatened Species. www.redlist.org

Robbins, R., Huveneers, C. 2011. Dipturus acrobelus. In: IUCN 2011. IUCN Red List of Threatened Species. www.redlist.org

Theiss, S.M., Huveneers, C., Ebert, D.A.2011. Chimaera argiloba. In: IUCN 2011. IUCN Red List of Threatened Species. www.redlist.org

Theiss, S.M., Huveneers, C., Ebert, D.A.2011. Chimaera fulva. In: IUCN 2011. IUCN Red List of Threatened Species. www.redlist.org

Theiss, S.M., Huveneers, C., Ebert, D.A.2011. Chimaera macrospina. In: IUCN 2011. IUCN Red List of Threatened Species. www.redlist.org

Theiss, S.M., Huveneers, C., Ebert, D.A.2011. Chimaera obscura. In: IUCN 2011. IUCN Red List of Threatened Species. www.redlist.org

Theiss, S.M., Huveneers, C., Ebert, D.A.2011. Hydrolagus homonycteris. In: IUCN 2011. IUCN Red List of Threatened Species. www.redlist.org

Theiss, S.M., Huveneers, C., Ebert, D.A.2011. Hydrolagus marmoratus. In: IUCN 2011. IUCN Red List of Threatened Species. www.redlist.org

Books/Book ChaptersHindell, M.A., Lea, M.A., Bost, C.A., Charrassin, J-B, Gales, N., Goldsworthy, S., Page, B., Robertson, G., Wienecke, B., O’Toole, M., Guinet, C., (2011). Foraging habitats of top predators, and Areas of Ecological Significance, on the Kerguelen Plateau. In: Duhamel G and Welsford D (eds), The Kerguelen Plateau: marine ecosystem and fisheries, Société Française d'lchtyologie, Abbeville, France, pp. 203-215. ISBN 2-9514628-6-7 (2011).

Conference Papers and PostersBeckmann, Crystal L., Charlie Huveneers, Jim Mitchell, Laurent Seuront & David Stone. Validation of the use of Fatty Acid Signatures to assess diet in sharks. The Postgraduate Conference, School of Biological Sciences, Flinders University, Adelaide, South Australia 28 – 30 June, 2011.

Bott, N. J. Molecular methods to aid identification of aquatic parasites. ASP Aquatic Parasitology Workshop. Cairns, Queensland July 10, 2011

Bowyer, Jenna N., Jian G. Qin, Richard P. Smullen, Louise R. Ward, David A.J. Stone. The influence of temperature on fish meal substitution with solvent extracted soybean meal and soy protein concentrate in yellowtail kingfish, Seriola lalandi. Skretting Australasian Aquaculture Conference, Melbourne, Australia, May 1 - 4, 2012.

Casper RM, Sumner MD, Hindell MA, Gales NJ, Staniland IJ and Goldsworthy SD. (2011) The influence of diet on foraging habitat models. International Biologging Symposium IV, Hobart, Tasmania, 13th-18th of March 2011.

Chapperon C & Seuront L (2011) Cooling down in the heat: the importance of thermoregulatory behaviour in intertidal ectotherms. The 2011 Australasian Society for the Study of Animal Behaviour Conference. April 11-13, 2011, Flinders University, Adelaide, Australia.

Chilvers, L., Goldsworthy S.D. (2011) New Zealand sea lion. Update to IUCN Pinniped Specialist Group. 19th Biennial Conference on the Biology of Marine Mammals (Tampa, Florida), 27 Nov 2011.

Deveney, M. Wiltshire, K. Tanner, J. Giblot-Ducray, D and Bott, N. Field trials of molecular tools for the detection of marine pests. Presentation. AMSA Conference, Perth 5-7 August 2011.

Goldsworthy S.D. (2011) Australian sea lion. Update to IUCN Pinniped Specialist Group. 19th Biennial Conference on the Biology of Marine Mammals (Tampa, Florida), 27 Nov 2011.

Goldsworthy SD, Hamer DJ, Page,B, Lowther AD, Shaughnessy PD, Hindell M, Burch P, Costa DP, Fowler SL, Peters K and McIntosh RR (2011) Correcting bycatch rates for encounter probability: using satellite telemetry data to model the distribution of foraging effort of a population of Australian sea lions to estimate and mitigate bycatch in a

demersal gillnet fishery. . International Biologging Symposium IV, Hobart, Tasmania, 13th-18th of March 2011.

Harcourt R, Field I, Hindell M, Lea M-A, Goldsworthy S, Page B and Boomer A.(2011) The Australian Animal Tagging and Monitoring System (AATAMS). International Biologging Symposium IV, Hobart, Tasmania, 13th-18th of March 2011.

Hindell MA, Bost C, Charrassin J-B, Gales N, Goldsworthy S, Lea M-A, O’Toole M and Guinet C. (2011) Foraging habitats of top predators, and areas of ecological significance on the Kerguelen Plateau. International Biologging Symposium IV, Hobart, Tasmania, 13th-18th of March 2011.

Huveneers C, Bruce B, Beckmann C and Semmens J (2011) Assessing the impacts of berleying from shark cage-diving operators on the swimming behaviour of the white shark (Carcharodon carcharias). 13th-18th of March 2011. International Biologging Symposium IV, Hobart, Tasmania

Lowther A.D, Harcourt, R., Goldsworthy S. D., Stow, A. (2011) Buying local: population structure and fine-scale foraging site fidelity of adult female Australian sea lions. 19th Biennial Conference on the Biology of Marine Mammals (Tampa, Florida), 28 Nov – 2 Dec.

Lowther AD, Harcourt RG, Hamer D and Goldsworthy SD. (2011) Avoiding the crowds: combining fine-scale biologging and stable isotope biogeochemistry to assess the temporal stability of alternate foraging behaviours of adult female Australian sea lions. International Biologging Symposium IV, Hobart, Tasmania, 13th-18th of March 2011.

Page B, Goldsworthy SD, Miller D, Abernathy K, Marshall G, Daniel O, McDonald B and Bryars S. (2011) Using well-equipped Australian sea lions to assess habitat quality and inform the zoning of Marine Parks in South Australia. International Biologging Symposium IV, Hobart, Tasmania, 13th-18th of March 2011.

Ahmad, Wan Abdul Rahim W., Kathryn A. Schuller, Jian Qin & David Stone. A study of alternative dietary oils source in barramundi (Lates calcarifer). The Postgraduate Conference, School of Biological Sciences, Flinders University, Adelaide, South Australia 28 – 30 June, 2011.

Rogers, P, Goldsworthy, SD, Page, B, Huveneers, C, Seuront, L and Mitchell, J.(2011) Migration patterns and habitat preferences of the shortfin mako shark, Isurus oxyrinchus, in the Southern, Indian and SW Pacific Oceans. 13th-18th of March 2011. International Biologging Symposium IV, Hobart, Tasmania

David A.J. Stone, Richard .P. Miegel, Sarah .J. Pain and Gordon .S. Howarth. Water temperature effects gut transit time, digestive enzyme activity and nutrient digestibility in yellowtail kingfish, Seriola lalandi. Skretting Australasian Aquaculture Conference, Melbourne, Australia, May 1 - 4, 2012.

Wiltshire, K. Rowling, K. Fernandes, M. Collings, G. Tanner, J. and Deveney, M. Assessing risks and impacts of the invasive alga Caulerpa taxifolia in South Australia. Presentation. AMSA Conference, Perth 5-7 August 2011.

Wiltshire, K. and Deveney, M. Investigating the occurrence and range of introduced marine species in South Australia. Poster. AMSA Conference, Perth 5-7 August 2011.

Internal Reports

Beyer, K., Gehrig, S., Leigh, S. J., Nicol, J. M. and Zampatti, B. P (2011). Intervention Monitoring at the Katarapko Native Fish Demonstration Reach (‘Katfish Reach’), South Australia: Progress Report. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000994-1. SARDI Research Report Series No. 520. 54pp.

Knight, M.A. and Tsolos, A (2011). South Australian Wild Fisheries Information and Statistics Report 2009/10. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2008/000804-3. SARDI Research Report Series No. 521. 60pp.

Schmarr, D.W., Mathwin, R. and McNeil, D.G (2011). Mapping threats to aquatic biota movement and recovery with the provision of environmental water in selected reaches of the South Para, Torrens and Onkaparinga Rivers - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000418-1. SARDI Research Report Series No. 570. 8pp.

Wiltshire, K.H. and Deveney, M.R (2011). Final monitoring report for the 2010-2011 marine pest survey of the Port of Adelaide, South Australia. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000386-1. SARDI Research Report Series No. 575. 34pp.

Zampatti, B.P., Leigh, S.J. and Nicol, J.M (2011). Fish and Aquatic Macrophyte Communities in the Chowilla Anabranch System, South Australia. A report on investigations from 2004 – 2007. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000719-1. SARDI Research Report Series No. 525. 180pp.

Client ReportsAldridge, K., Goodman, A., Nicol, J., Gehrig, S. and Ganf, G. (2011). 'Using recent wetting events to detect salinity thresholds for aquatic plants in the South-East of South Australia. Goyder Institute for Water Research, Technical Report. Series No. 11/6, Adelaide. 20pp.

Austin, D., Mackie, J., Byers, B., and Nayar, S. 2011. Utilisation of nutrients and uptake of metals in wastewater for algae to energy production: Algal Bioenergy Technology

Assessment; Final Report prepared for Melbourne Water Corporation. CH2M Hill Australia Pty Ltd, Melbourne. p. 77.

Bice, C., Hammer, M., Wilson, P. and Zampatti, B (2011). Fish monitoring for the ‘Drought Action Plan for South Australian Murray-Darling Basin threatened freshwater fish populations’: Summary for 2010/11. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000647-2. SARDI Research Report Series No. 564. 214pp.

Bice, C. and Zampatti, B (2011). Response of fish to the ‘Goolwa Channel Water Level Management Plan’: 2009-2011. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000703-2. SARDI Research Report Series No 541. 45pp

Bott, N.J. and Giblot-Ducray, D. (2011). Molecular tools for detection of marine pests: Musculista senhousia, Corbula gibba and Perna canaliculus Quantitative PCR assays.A report prepared for Biosecurity SA. South Australian Research and Development Institute (Aquatic Sciences), SARDI Publication No. F2010/000991-1. SARDI Research Report Series No. 522. 22pp. Report for Biosecurity SA.

Bott, N.J. and Giblot-Ducray, D (2011). Molecular tools for detection of marine pests: Development of diagnostic PCR assays for the detection of significant marine pests: Carcinus maenas, Ciona intestinalis and Undaria pinnatifida. Report prepared for Adelaide & Mt Lofty Ranges Natural Resources Management Board. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000503-1. SARDI Research Report Series No. 587. 24pp.

Bryars S, Rogers P, Huveneers C, Payne N, Smith I, and McDonald B. (2011). What size do Marine Park Sanctuary Zones need to be to protect the Western Blue Groper Achoerodus gouldii, Harlequin Fish Othos dentex, and Bluethroat Wrasse Notolabrus tetricus? Final Report to DENR. Wildlife Conservation Fund Project Number 0638. 36 pp.

Clarke, S., Li, X. and Ellis, D. (2011). Southern bluefin tuna Thunnus maccoyii. In: G.T. Pecl, Z. Doubleday, T. Ward, S. Clarke, J. Day, C. Dixon, S. Frusher, P. Gibbs, A. Hobday, N. Hutchinson, S. Jennings, K. Jones X. Li, D. Spooner and R. Stoklosa. Risk assessment of impacts of climate change for key marine species in south eastern Australia. Fisheries Research and Development Corporation, Project 2009/070

Currie, D.R (2011). South Australian Giant Crab (Pseudocarcinus gigas) Fishery Status Report 2009/10. Fishery Status Report to PIRSA Fisheries & Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000332-1. SARDI Research Report Series No. 568. 8pp.

Currie, D.R (2011). South Australian Giant Crab (Pseudocarcinus gigas) Fishery Status Report 2010/11. Status Report to PIRSA Fisheries & Aquaculture. South Australian

Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000332-2. SARDI Research Report Series No. 591. 9pp.

Currie, D.R. (2010). Southern Surveyor Voyage Summary SS02_2010T. Deep water benthic biodiversity of the GAB Marine Park. Report to the Marine National Facility. Published online at http://www.marine.csiro.au/nationalfacility/voyagedocs/2010/MNF-SS2010_t02_summary.pdf.

Currie, D.R. and Sorokin, S.J. (2011). A comparison of megafaunal biodiversity in two contrasting submarine canyons on Australia’s southern continental margin. Report to the South Australian Department of Environment and Natural Resources. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Aquatic Sciences Publication Number F2010/000981-1, SARDI Research Report Series Number 519. 49pp.

Currie, D.R. and Sorokin, S.J (2011). A preliminary assessment of the deepwater benthic communities of the Great Australian Bight Marine Park. Report to the Australian Government Department of Sustainability, Environment, Water, Population and Communities and the South Australian Department of Environment and Natural Resources. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000526-1. SARDI Research Report Series No. 592. 61pp.

Currie, D.R. and Ward, T.M (2011). Estimating historical catches from preliminary sanctuary zone scenarios in South Australia’s marine parks. Report to the Primary Industries and Resources South Australia Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences

Currie, D.R. and Ward, T.M. (2011). Estimating historical fishery catches from proposed sanctuary zone scenarios in South Australia’s Marine Protected Areas. Report to Primary Industries and Resources South Australia Fisheries and Aquaculture. SARDI Aquatic Sciences Publication No. F2011/000307-1. SARDI Research Report Series No.557.

Deveney, M. and Wiltshire, K. (2011). Chemical discharge standards to ensure environmental protection following ballast water or biofouling treatment processes. Report for the Department of Agriculture, Fisheries and Forestry (DAFF).

Dixon, C.D., Roberts, S.D. & Hooper, G.E (2011). Gulf St Vincent Prawn, Penaeus (Melicertus) latisulcatus, Fishery 2009/10. Fishery Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000782-4. SARDI Research Report Series No. 526. 121pp.

Dixon, C.D. and Hooper, G.E (2011). Blue Crab (Portunus armatus) Fishery 2009/10. Stock Assessment Report to PIRSA Fisheries and Aquaculture. South Australian

Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000729–7. SARDI Research Report Series No. 531. 77pp

Ferguson, G (2011). The South Australian Lakes and Coorong Fishery. Fishery Stock Status Report for PIRSA Fisheries. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000669-2. SARDI Research Report Series No. 527. 17pp.

Ferguson, G. and Ward, T.M (2011). Mulloway (Argyrosomus japonicus) Fishery. Fishery Stock Assessment Report for PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000898-2. SARDI Research Report Series No. 573. 104pp.

Fowler, A.J., McGarvey, R., Burch, P. and Feenstra, J.E (2011). King George Whiting (Sillaginodes punctatus) Fishery. Fishery Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000843-3. SARDI Research Report Series No. 562. 89pp

Fowler, A.J., McGarvey R., Steer, M.A. and Feenstra, J.E (2011). The South Australian Marine Scalefish Fishery Stock Status Report. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000565-6. SARDI Research Report Series No. 586. 29pp.

Gehrig, S.L., Nicol, J.M. and Bucater, L. (2011). 'Aquatic and littoral vegetation monitoring of Goolwa Channel 2009-11.' South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000383-2. SARDI Research Report Series No.555. 47pp.

Gehrig, SL, Nicol, JM and Marsland, KB 2011. Lower Lakes vegetation condition monitoring – 2010/2011. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. 64 pp. SARDI Publication Number F2010/000370-3. SARDI Research Report Series No. 567. 64pp

Gillanders, B.M.1 and Ye, Q (2011). Ecological risk assessment of stocking Murray cod in South Australia. Report to PIRSA Fisheries and Aquaculture. School of Earth and Environmental Sciences, The University of Adelaide, Adelaide and South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000299-1. SARDI Research Report Series No. 571. 26pp.

Goldsworthy, S.D., Page, B., Kennedy, C., Welz K, Shaughnessy, P.D. (2011) Australian sea lion population monitoring at Seal Bay and the Seal Slide, Kangaroo Island: 2010 breeding season. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000216-1. SARDI Research Report Series No. 556. 36 pp.

Goldsworthy, S.D., Page, B., Rogers, P. and Ward, T (2011). Establishing ecosystem-based management for the South Australian Sardine Fishery: developing ecological performance indicators and reference points to assess the need for ecological allocations. Final Report to the Fisheries Research and Development Corporation. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000863-1. SARDI Research Report Series No. 529. 173pp.

Ham, J., Madigan, S., Mantilla, E. and King, R (2011). Can they hear me? Modern and innovative strategies to communicate with the seafood industry. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000106-1. SARDI Research Report Series No. 533. Australian Seafood Cooperative Research Centre (CRC), Australian Seafood CRC Project No. 2009/747. 15pp.

Hooper, G.E., Dixon, C.D. and Roberts, S.D (2011). West Coast Prawn, Penaeus (Melicertus) latisulcatus Fishery, 2010. Fishery Status Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000772-4. SARDI Research Report Series No. 563. 20pp.

Knight, M.A. and Vainickis, A.A (2011). Confidential 2010/11 Data Summary of the South Australian Recreational Charter Boat Fishery. Report to PIRSA Fisheries and Aquaculture - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000437-1. SARDI Research Report Series No. 579. 13pp.

Knight, M.A. and Vainickis, A.A (2011). Interactions with Threatened, Endangered or Protected Species in South Australian Managed Fisheries – 2007/08, 2008/09, and 2009/10. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000544-1. SARDI Research Report Series No.534. 44pp.

Knight, M.A. and Vainickis, A.A (2011). Interactions with Threatened, Endangered or Protected Species in South Australian Managed Fisheries – 2008/09, 2009/10, and 2010/11. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000544-2. SARDI Research Report Series No. 593. 41pp.

Knight, M.A. and Vainickis, A.A (2011). Non-Confidential 2010/11 Data Summary of the South Australian Recreational Charter Boat Fishery. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000438-1. SARDI Research Report Series No. 580. 13pp.

Leigh, S.J. and Zampatti, B.P (2011). Movement and spawning of Murray cod (Maccullochella peelii) and golden perch (Macquaria ambigua ambigua) in response to

a small-scale flow manipulation in the Chowilla Anabranch system. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000646-1. SARDI Research Report Series No. 536. 45pp.

Li, X., Clarke, S., Doubleday, Z. and Hutchinson, N. (2011). Abalone, blacklip, greenlip and tiger (hybrid), Haliotis rubra and H. laevigata. In: G.T. Pecl, Z. Doubleday, T. Ward, S. Clarke, J. Day, C. Dixon, S. Frusher, P. Gibbs, A. Hobday, N. Hutchinson, S. Jennings, K. Jones X. Li, D. Spooner and R. Stoklosa. Risk Assessment of Impacts of Climate Change for Key Marine Species in South Eastern Australia. Fisheries Research and Development Corporation, Project 2009/070

Li, X., Clarke, S. and Doubleday, Z. (2011). Pacific oyster Crassostrea gigas. In: G.T. Pecl, Z. Doubleday, T. Ward, S. Clarke, J. Day, C. Dixon, S. Frusher, P. Gibbs, A. Hobday, N. Hutchinson, S. Jennings, K. Jones X. Li, D. Spooner and R. Stoklosa. Risk Assessment of Impacts of Climate Change for Key Marine Species in South Eastern Australia. Fisheries Research and Development Corporation, Project 2009/070.

Li, X., Clarke, S., Stone, D. and Chen, B. (2011). Yellowtail kingfish Seriola lalandi. In: G.T. Pecl, Z. Doubleday, T. Ward, S. Clarke, J. Day, C. Dixon, S. Frusher, P. Gibbs, A. Hobday, N. Hutchinson, S. Jennings, K. Jones X. Li, D. Spooner and R. Stoklosa. Risk Assessment of Impacts of Climate Change for Key Marine Species in South Eastern Australia. Fisheries Research and Development Corporation, Project 2009/070

Linnane, A., McGarvey, R., Feenstra, J and Hoare, M (2011). Northern Zone Rock Lobster (Jasus edwardsii) Fishery 2009/10. Fishery Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000320-4. SARDI Research Report Series No. 561. 82pp.

Linnane, A., McGarvey, R., Feenstra, J. and Hoare, M (2011). Northern Zone Rock Lobster (Jasus edwardsii) Fishery Status Report 2010/11. Status Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000714-5. SARDI Research Report Series No. 589. 21pp.

Linnane, A., McGarvey, R., Feenstra, J. and P. Hawthorne (2011). Southern Zone Rock Lobster (Jasus edwardsii) Fishery 2009/10. Fishery Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000276-4. SARDI Research Report Series No. 560. 95pp.

Linnane, A., McGarvey, R., Feenstra, J. and Hawthorne, P (2011). Southern Zone Rock Lobster (Jasus edwardsii) Fishery Status Report 2010/11. Status Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000715-5. SARDI Research Report Series No. 588. 23pp.

Linnane A. and Walsh P (2011). Standardising data collection across the southern rock lobster fisheries of South Australia, Victoria and Tasmania. Report to the Fisheries Research and Development Corporation. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000393-1. SARDI Research Report Series No. 447. 101pp.

Loo, M. G. K., Ophel-Keller, K. and McKay, A. (2011). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2010 Report: Tony's Tuna International Pty Ltd, Licence Numbers AQ00027, AQ00054, AQ00125 and AQ00169. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-3. SARDI Research Report Series No. 542. 23pp.

Loo, M. G. K., Ophel-Keller, K. and McKay, A (2011). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2009 Report: Tony's Tuna International Pty Ltd, Licence Numbers AQ00027, AQ00054, AQ00125 and AQ00169. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-3. SARDI Research Report Series No. 542. 24pp.

Loo, M. G. K., Ophel-Keller, K. and McKay, A. (2011). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2010 Report: AJKA Pty Ltd, Licence Numbers AQ00055 and AQ00024. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-3. SARDI Research Report Series No. 544. 23pp.

Loo, M. G. K., Ophel-Keller, K. and McKay, A (2011). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2009 Report: KIS TUNA Pty Ltd, Licence Numbers AQ00056, AQ00023, AQ00026, AQ00030, AQ00046, AQ00050 and FB00008. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-3. SARDI Research Report Series No. 545. 24pp

Loo, M. G. K., Ophel-Keller, K. and McKay, A. (2011). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2010 Report: KIS TUNA Pty Ltd, Licence Numbers AQ00056, AQ00023, AQ00026, AQ00030, AQ00046, AQ00050 and FB00008. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-3. SARDI Research Report Series No. 545. 25pp.

Loo, M. G. K., Ophel-Keller, K. and McKay, A (2011). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2009 Report: Marnikol

Fisheries Pty Ltd, Licence Numbers AQ00057. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-3. SARDI Research Report Series No. 546. 24pp.

Loo, M. G. K., Ophel-Keller, K. and McKay, A. (2011). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2010 Report: Blaslov Fishing Pty Ltd, Licence Number AQ00058. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-3. SARDI Research Report Series No. 547. 23pp.

Loo, M. G. K., Ophel-Keller, K. and McKay, A. (2011). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2009 Report: Blaslov Fishing Pty Ltd, Licence Numbers AQ00058. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-3. SARDI Research Report Series No. 547. 24pp.

Loo, M. G. K., Ophel-Keller, K. and McKay, A (2011). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2009 Report: Sekol Pty Ltd, Licence Numbers AQ00060 and AQ00059. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-3. SARDI Research Report Series No. 548. 24pp.

Loo, M. G. K., Ophel-Keller, K. and McKay, A. (2011). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2010 Report: Tony's Tuna International Pty Ltd, Licence Numbers AQ00080, AQ00053 and AQ00062. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-3. SARDI Research Report Series No. 549. 23pp.

Loo, M. G. K., Ophel-Keller, K. and McKay, A (2011). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2009 Report: Tony's Tuna International Pty Ltd, Licence Numbers AQ00080, AQ00053 and AQ00062. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No.F2009/000585-3. SARDI Research Report Series No. 549. 24pp.

Loo, M. G. K., Ophel-Keller, K. and McKay, A. (2011). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2010 Report: SAMS Sea Farm Pty Ltd, Licence Number AQ00112. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-3. SARDI Research Report Series No. 550. 23pp.

Loo, M. G. K., Ophel-Keller, K. and McKay, A (2011). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2009 Report: SAMS Sea Farm Pty Ltd, Licence Numbers AQ00112. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No.F2009/000585-3. SARDI Research Report Series No. 550. 24pp.

Loo, M. G. K., Ophel-Keller, K. and McKay, A. (2011). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2010 Report: Dinko Tuna Farmers Pty Ltd, Licence Number AQ00170. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-3. SARDI Research Report Series No. 551. 23pp.

Loo, M. G. K., Ophel-Keller, K. and McKay, A (2011). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2009 Report: Dinko Tuna Farmers Pty Ltd, Licence Numbers AQ00170. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No.F2009/000585-3. SARDI Research Report Series No. 551. 24pp.

Loo, M. G. K., Ophel-Keller, K. and McKay, A (2011). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2009 Report: Eyre Tuna Pty Ltd, Licence Numbers FB00051. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No.F2009/000585-3. SARDI Research Report Series No. 552. 24pp

Loo, M. G. K., Ophel-Keller, K. and McKay, A. (2011). Yellowtail Kingfish (Seriola lalandi) Aquaculture Environmental Monitoring Program 2009/10 Report for Southern Star Aquaculture Pty Ltd, Fitzgerald Bay, South Australia: Licence Number FF00030. South Australian Research and Development Institute (Aquatic Sciences). Adelaide. SARDI Publication No. F2010/000207-2. SARDI Research Report Series No. 537. 18 pp.

Loo, M. G. K., Ophel-Keller, K. and McKay, A. (2011). Yellowtail Kingfish (Seriola lalandi) Aquaculture Environmental Monitoring Program 2009/10 Report for Cleanseas Aquaculture Growout Pty Ltd, Fitzgerald Bay, South Australia: Licence Numbers FF00026 and FF00029. South Australian Research and Development Institute (Aquatic Sciences). Adelaide. SARDI Publication No. F2010/000207-2. SARDI Research Report Series No. 538. 19 pp.

Loo, M. G. K., Ophel-Keller, K. and McKay, A. (2011). Yellowtail Kingfish (Seriola lalandi) Aquaculture Environmental Monitoring Program 2009/10 Report for Cleanseas Aquaculture Growout Pty Ltd, Arno Bay, South Australia: Licence Numbers AQ00017, AQ00018 and FB00078. South Australian Research and Development Institute (Aquatic

Sciences). Adelaide. SARDI Publication No. F2010/000207-2. SARDI Research Report Series No. 539. 20 pp.

Loo, M. G. K., Ophel-Keller, K. and McKay, A. (2011). Yellowtail Kingfish (Seriola lalandi) Aquaculture Environmental Monitoring Program 2009/10 Report for Cleanseas Aquaculture Growout Pty Ltd, Boston Bay, South Australia: Licence Numbers AQ00015, FF00090, FF00084, FF00085 and Aq00139. South Australian Research and Development Institute (Aquatic Sciences). Adelaide. SARDI Publication No. F2010/000207-2. SARDI Research Report Series No. 540. 22 pp

Loo, M. G. K., Mantilla, L. and Nichols, J. (2011). Yellowtail Kingfish (Seriola lalandi) Aquaculture Environmental Monitoring Program 2009/10 Report for Cleanseas Aquaculture Growout Pty Ltd - Reassessment of Licence Number FF00085. RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences). Adelaide. SARDI Publication No. F2010/000207-2. SARDI Research Report Series No. 574. 18 pp

Lowther, A.D.1 2, Goldsworthy, S.D.2, Harcourt, R.3, Donnellan, S.4, and Page, B5 (2011). Structure and subdivision of the Australian sea lion - defining species-wide management units using ecological and genetic information. Final report to the Wildlife Conservation Fund, Department of Environment and Natural Resources, South Australia. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000421-1. SARDI Research Report Series No. 576. 15pp.

Mayfield, S. and Hogg, A (2011). Southern Zone Abalone Fishery (Haliotis rubra & H. laevigata). Fishery Assessment Report for PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000552-3. SARDI Research Report Series No. 535. 57pp.

McNeil, D. G. and Fredberg, J (2011). Environmental Water Requirements of native fishes in the Middle River catchment, Kangaroo Island, South Australia. A report to the SA Department for Water. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000060-1. SARDI Research Report Series No. 528. 50pp.

McNeil, D.G, Schmarr, D.W and Mathwin, R (2011). Condition of Freshwater Fish Communities in the Adelaide and Mount Lofty Ranges Management Region. Report to the Adelaide and Mount Lofty Ranges Natural Resources Management Board. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000502-1. SARDI Research Report Series No. 590. 65pp.

McNeil, D.G., Schmarr, D.W., Wilson, P.J. and Reid D. J (2011). Fish Community and Flow Ecology in the Western Mount Lofty Ranges Environmental Water Provisions Trial Reaches. Final Report to the Adelaide and Mount Lofty Ranges Natural Resources Management Board and the SA Department for Water. South Australian Research and

Development Institute (Aquatic Sciences), Adelaide. SARDI Research Report Series No. 581. 238pp.

McNeil, D. G, White, M. and Schmarr, D. W (2011) Assessment of endemic fish (Mogurnda clivicola) and native vegetation at springs in the northern Flinders Ranges. Report to the South Australian Arid Lands Natural Resources Management Board, Port Augusta. South Australian Research and Development Institute and South Australian Department for Water. SARDI Research Report Series No. 518. 92pp.

McNeil, D.G., Hartwell, D., Conallin, A.J., and Stuart, I.G. (2011) Baseline trials of carp control technologies in wetlands of the lower Lachlan River. Report to the Lachlan Catchment Management Authority and the Invasive Animals Cooperative Research Centre. SARDI Report Series 516. South Australian Research and Development Institute (Aquatic Sciences), Adelaide, 54pp.

Middleton, J.F., James, C.E., Luick, J.L., Goldsworthy, S., Tsolos, A., Teixeira, C.E.P. and Richardson, L (2011). Survey of Sonar Test Sites, Phase 1, Literature Review. Final Report for the Defence Science and Technology Organisation. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000212-1. SARDI Research Report Series No. 566. 67pp.

Nayar, S., Bott, K. and Braley, M. (2011). Technical progress report on ‘Strain selection and improvement’ and ‘development and optimisation of high rate algal production systems’ for the project “developing a proof-of-concept facility for microalgal biodiesel feedstock and value-added products to pioneer a sustainable South Australian biofuels industry”. Submitted to Flinders Partners on 7 February 2011. 19pp.

Page, B. Goldsworthy, S.D and Shaughnessy, P.D (2011). Assessment of the proposed changes to the boardwalks and tours at Seal Bay, Kangaroo Island. Final report to the Department of Environment and Natural Resources - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000047-1. SARDI Research Report Series No. 523. 94pp.

Steer, M.A., McGarvey, R., Fowler, A.J., Jackson, W.B. and Lloyd, M.T (2011). Promoting stock recovery through the standardisation of fishing gear: streamlining the hauling net sector of South Australia’s Garfish Fishery. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000412-1. SARDI Research Report Series No. 578. 55pp.

Stobart, B., Dent, J.J., Matthews, D., Chick, R.C. and Mayfield, S (2011). Western Zone Abalone (Haliotis rubra & H. laevigata) Fishery (Region A). Fisheries status report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000290-1. SARDI Research Report Series No. 565. 46pp.

Thwaites, L. A (2011). Proof of concept of a novel wetland carp separation cage at Lake Bonney, South Australia. A summary report for the Invasive Animals Cooperative Research Centre and the South Australian Murray-Darling Basin Natural Resources Management Board. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000086-1. SARDI Research Report Series No. 530. 38pp.

Ward, T.M., Ivey, A.R. and Burch, P (2011). Spawning Biomass of sardine, Sardinops sagax, in waters off South Australia in 2011. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000566-4. SARDI Research Report Series No. 584. 31pp.

Ward, T.M., Ivey, A., Hamer, D.J. and Burch, P (2011). Effectiveness of an industry Code of Practice in mitigating the operational interactions of the South Australian Sardine Fishery with the short-beaked common dolphin (Delphinus delphis). Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000726-2. SARDI Research Report Series No. 583. 33pp.

Ward, T.M., Lyle, J., Keane, J.P., Begg, G., Hobsbawn, P., Ivey, A.R., Sakabe, R. and Steer, M.A (2012). Commonwealth Small Pelagic Fishery: Status Report 2010. Report to Australian Fisheries Management Authority. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000270-2. SARDI Research Report Series No. 524. 85pp.

Wiebkin, A. S (2011) Conservation management priorities for little penguin populations in Gulf St Vincent. Report to Adelaide and Mount Lofty Ranges Natural Resources Management Board. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000188-1. SARDI Research Report Series No. 588. 97pp.

Ye, Q., Bucater, L., Ferguson, G., and Short, D. A. (2011). Coorong Fish Condition Monitoring 2008-2010: Population and recruitment status of Black Bream (Acanthopagrus butcheri) and Greenback Flounder (Rhombosolea tapirina). ICES Document F2011/000331-1. 55 pp. SARDI Publication No. F2011/000331-1. SARDI Research Report Series No. 572. 55pp.

Ye, Q., Bucater, L. and Short, D (2011). Coorong fish condition monitoring 2008/09–2009/10: population and recruitment status of the smallmouthed hardyhead (Atherinosoma microstoma). South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication Number F2010/000980-1. SARDI Research Report Series Number 594. 35pp.

Ye, Q., Bucater, L. and Short, D (2011). Coorong fish intervention monitoring during barrage releases in 2010/11. South Australian Research and Development Institute

(Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000309-1. SARDI Research Report Series No. 559. 57pp.

Ye, Q., Bucater, L. and Short, D (2011). Coorong fish condition monitoring 2008–2011: the black bream (Acanthopagrus butcheri), greenback flounder (Rhombosolea tapirina) and smallmouthed hardyhead (Atherinosoma microstoma) populations. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000471-1. SARDI Research Report Series No. 582. 55pp.

Zampatti, B.P., Bice, C.M. and Jennings, P.R (2011). Fish assemblage structure, movement and recruitment in the Coorong and Lower Lakes from 2006-2010. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000186-1. SARDI Research Report Series No. 569. 43pp.