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1FALL 2011
CHEM 430
IR SPECTROSCOPY
Long
LecturePlayDr. Justik
INTRODUCTION
• The method provides a rapid and simple method for observing the functional group species present in an organic molecule
• The spectrum is a plot of the percentage of IR radiation that passes through the sample (% transmission) versus some function of the wavelength of the radiation related to covalent bonding
Infrared and Raman Spectroscopy 11-1
CHEM 430 – NMR Spectroscopy
2
INTRODUCTION
Instrumentation.Modern IR spectrometers are based on the Michelson interferometer
• Fourier transform infrared ( FT– IR) spectrometers: The absorption spectrum is obtained by means of Fourier transformation of an interferogram.
• Dispersive infrared spectrometers: Earlier instruments based on monochromators that disperse the radiation from an IR source into its component wavelengths - spectrum is obtained by measuring the amount of radiation absorbed by a sample as the wavelength is varied.
• Raman spectroscopy provides information complementary to that obtained from IR spectroscopy.
Infrared and Raman Spectroscopy 11-1
CHEM 430 – NMR Spectroscopy
3
VIBRATIONS OF MOLECULES
The IR Spectroscopic Process.• The quantum mechanical energy levels observed in IR spectroscopy are those of
molecular vibration
• When we say a covalent bond between two atoms is of a certain length, we are citing an average because the bond behaves as if it were a vibrating spring connecting the two atoms
• For a simple diatomic molecule, this model is easy to visualize:
Infrared and Raman Spectroscopy 11-2
CHEM 430 – NMR Spectroscopy
4
VIBRATIONS OF MOLECULES
The IR Spectroscopic Process.• There are two types of bond vibration:
1. Stretch – Vibration or oscillation along the line of the bond
2. Bend – Vibration or oscillation not along the line of the bond
Infrared and Raman Spectroscopy 11-2
55
H
H
C
H
H
C
scissor
asymmetric
H
H
CCH
H
CC
H
HCC
H
HCC
symmetric
rock twist wagin plane out of plane
VIBRATIONS OF MOLECULES
The IR Spectroscopic Process.• Each stretching and bending vibration occurs with a characteristic frequency
• Typically, this frequency is on the order of 1.2 x 1014 Hz (120 trillion oscillations per sec. for the H2 vibration at ~4100 cm-1)
• The corresponding wavelengths are on the order of 2500-15,000 nm or 2.5 – 15 microns (mm)
• When a molecule is bombarded with electromagnetic radiation (photons) that match the frequency of one of these vibrations (IR radiation), it is absorbed and the bonds begin to stretch and bend more strongly (emission and absorption)
• When this photon is absorbed the amplitude of the vibration is increased NOT the frequency
Infrared and Raman Spectroscopy 11-2
CHEM 430 – NMR Spectroscopy
6
VIBRATIONS OF MOLECULES
The IR Spectroscopic Process.• The result of the spectroscopic process is a spectrum of the various stretches
and bends of the covalent bonds in an organic molecule
Infrared and Raman Spectroscopy 11-2
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77
VIBRATIONS OF MOLECULES
The IR Spectroscopic Process.• The x-axis of the IR spectrum is in units of wavenumbers, n, which is the
number of waves per centimeter in units of cm-1 (Remember E = ħn or E = ħc/l)
• This unit is used rather than wavelength (microns) because wavenumbers are directly proportional to the energy of transition being observed –
chemists like this, physicists hate it
High frequencies and high wavenumbers equate higher energyis quicker to understand than
Short wavelengths equate higher energy
Infrared and Raman Spectroscopy 11-2
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88
VIBRATIONS OF MOLECULES
The IR Spectroscopic Process.• This unit is used rather than frequency as the numbers are more “real” than the
exponential units of frequency
• IR spectra are observed for what is called the mid-infrared: 400-4000 cm-1
• The peaks are Gaussian distributions of the average energy of a transition
Infrared and Raman Spectroscopy 11-2
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VIBRATIONS OF MOLECULES
The IR Spectroscopic Process.• So how does the IR detect different bonds?
• The potential energy stretching or bending vibrations of covalent bonds follow the model of the classic harmonic oscillator (Hooke’s Law)
Infrared and Raman Spectroscopy 11-2
CHEM 430 – NMR Spectroscopy
1010
Pote
nti
al En
erg
y
(E)
Interatomic Distance (y)
Remember: E = ½ ky2
where: y is spring displacementk is spring constant
VIBRATIONS OF MOLECULES
The IR Spectroscopic Process.Aside: Physically here are the movements we are discussing:• Stretching vibration: a typical C-C bond with a bond length of 154 pm, the
displacement is averages 10 pm:
• Bending vibration: For C-C-C bond angle a change of 4° is typical, which corresponds to an average displacement of 10 pm.
Infrared and Raman Spectroscopy 11-2
CHEM 430 – NMR Spectroscopy
1111
10 pm
154 pm
4o 10 pm
VIBRATIONS OF MOLECULES
The IR Spectroscopic Process.• The energy levels for these vibrations are quantized as we are considering
quantum mechanical particles
• Only discrete vibrational energy levels exist:
• Note there is no energy level below n = 0, at any temperature above absolute zero there is always the first vibrational energy level
Infrared and Raman Spectroscopy 11-2
CHEM 430 – NMR Spectroscopy
1212
Pote
nti
al En
erg
y
(E)
Interatomic Distance (r)
rotational transitions – (in microwave region)
Vibrational transitions, n
VIBRATIONS OF MOLECULES
The IR Spectroscopic Process.• However, the application of the classical vibrational model fails apart for
two reasons:1. As two nuclei approach one another through bond vibration,
potential energy increases to infinity, as two positive centers begin to repel one another
2. At higher vibrational energy levels, the amplitude of displacement becomes so great, that the overlapping orbitals of the two atoms involved in the bond, no longer interact and the bond dissociates
• We say that the model is really one of an aharmonic oscillator, for which the simple harmonic oscillator model works well for low energy levels
Infrared and Raman Spectroscopy 11-2
CHEM 430 – NMR Spectroscopy
1313
VIBRATIONS OF MOLECULES
The IR Spectroscopic Process.• Here is the derivation of Hooke’s Law we will apply for IR theory:
• Vibrational frequency given by:
n : frequencyK: force constant – bond strengthm: reduced mass = m1m2/(m1+m2)
• Reduced mass is used, as each atom in the covalent bond oscillates about the center of the two masses
Infrared and Raman Spectroscopy 11-2
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VIBRATIONS OF MOLECULES
The IR Spectroscopic Process.• What does this mean for the different covalent bonds in a molecule?
Let’s consider reduced mass, m, first:• The C-H and C-C single bonds differ by only 16 kcal/mole:
99 kcal · mol-1 vs. 83 kcal · mol-1 (similar K)
• Due to the reduced mass term, these two bonds of similar strength show up in very different regions of the IR spectrum:
C─C 1200 cm-1 m = (12 x 12)/(12 + 12) = 6(0.41)
C─H 3000 cm-1 m = (1 x 12)/(1 + 12) = 0.92 (0.95)
• A smaller atom therefore gives rise to a higher wavenumber (and n and E)
Infrared and Raman Spectroscopy 11-2
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VIBRATIONS OF MOLECULES
The IR Spectroscopic Process.• What does this mean for the different covalent bonds in a molecule?
When greater masses are added, the trend is similar (K’s here are different)C─I 500 cm-1
C─Br 600 cm-1
C─Cl 750 cm-1
C─O 1100 cm-1
C─C 1200 cm-1
C─H 3000 cm-1
A smaller atom therefore gives rise to a higher wavenumber (and n and E)and a larger atom gives rise to lower wavenumbers (and n and E)
Infrared and Raman Spectroscopy 11-2
CHEM 430 – NMR Spectroscopy
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VIBRATIONS OF MOLECULES
The IR Spectroscopic Process.• What does this mean for the different covalent bonds in a molecule?
Let’s consider bond strength, K:• A C≡C bond is stronger than a C=C bond is stronger than a C-C bond
wavenumber, cm-1 DHf
• From IR spectroscopy we find: C≡C ~2100200
C=C ~1650 146
C—C ~120083
Note the good correlation with the heats of formation for each bond!
Stronger bonds give higher wavenumbers (and higher n and E)
Infrared and Raman Spectroscopy 11-2
CHEM 430 – NMR Spectroscopy
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VIBRATIONS OF MOLECULES
The IR Spectroscopic Process.• The y-axis of the IR spectrum is in units of transmittance, T, which is the ratio
of the amount of IR radiation transmitted by the sample (I) to the intensity of the incident beam (I0); % Transmittance is T x 100
T = I / I0
%T = (I / I0) X 100
• IR is different than other spectroscopic methods which plot the y-axis as units of absorbance (A). A = log(1/T)
• As opposed to chromatography or other spectroscopic methods, the area of a IR band (or peak) is not directly proportional vs. concentration of other functionalities, it can be used vs. itself if standardized!!!
Infrared and Raman Spectroscopy 11-2
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VIBRATIONS OF MOLECULES
The IR Spectroscopic Process.• The intensity of an IR band is affected by two primary factors:
• Whether the vibration is one of stretching or bending• Electronegativity difference of the atoms involved in the bond:
• For both effects, the greater the change in dipole moment in a given vibration or bend, the larger the peak.
• The greater the difference in electronegativity between the atoms involved in bonding, the larger the dipole moment
Typically, stretching will change dipole moment more than bending
Infrared and Raman Spectroscopy 11-2
CHEM 430 – NMR Spectroscopy
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VIBRATIONS OF MOLECULES
The IR Spectroscopic Process.• It is important to make note of peak intensities to show the effect of these
factors:• Strong (s) – peak is tall, transmittance is low• Medium (m) – peak is mid-height• Weak (w) – peak is short, transmittance is high• * Broad (br) – if the Gaussian distribution is abnormally broad(* this is more for describing a bond that spans many energies)
Exact transmittance values are rarely recorded
Infrared and Raman Spectroscopy 11-2
CHEM 430 – NMR Spectroscopy
2020
21
II. Infrared Group AnalysisA. General
1. The primary use of the IR spectrometer is to detect functional groups 2. Because the IR looks at the interaction of the EM spectrum with actual
bonds, it provides a unique qualitative probe into the functionality of a molecule, as functional groups are merely different configurations of different types of bonds
3. Since most “types” of bonds in covalent molecules have roughly the same energy, i.e., C=C and C=O bonds, C-H and N-H bonds they show up in similar regions of the IR spectrum
4. Remember all organic functional groups are made of multiple bonds and therefore show up as multiple IR bands (peaks)
There are 4 principle regions:
4000 cm-1 2700 cm-1 2000 cm-1 1600 cm-1 400 cm-1
Bonds to H
O-H single bondN-H single bondC-H single bond
Triple bonds
C≡CC≡N
Double bonds
C=OC=NC=C
Single Bonds
C-CC-NC-O
Fingerprint Region
22
We will pick up next time with peak intensities, width of bands and some simple symmetry rules, as well as instrument design
Monday we should finally get to functional groups where we will apply in depth the general topics we have discussed in the introductory material
No Problem set for today!
But take this time to review some organic:- bond strengths – both inter and intra-molecular- bond distances for more organic-y bonds- hybridization models- Periodic table and properties – you should know the
position and EN’s of H, B, C, N, O, F, Si, P, S, Cl, Br and I
23
IR Spectroscopy
I. IntroductionF. The IR Spectrum
4. The intensity of an IR band is affected by two primary factors:• Whether the vibration is one of stretching or bending• Electronegativity difference of the atoms involved in the
bond:For both effects, the greater the change in dipole moment in a given vibration or bend, the larger the peak
The greater the difference in electronegativity between the atoms involved in bonding, the larger the dipole moment
Typically, stretching will change dipole moment more than bending
5. It is important to make note of peak intensities to show the effect of these factors:• Strong (s) – peak is tall, transmittance is low• Medium (m) – peak is mid-height• Weak (w) – peak is short, transmittance is high• * Broad (br) – if the Gaussian distribution is abnormally
broad• (*this is more for describing a bond that spans many
energies)Exact transmittance values are rarely recorded
24
IR Spectroscopy
I. IntroductionG. The IR Spectrum – Factors that affect group frequencies
We have learned:• That IR radiation can “couple” with the vibration of
covalent bonds, where that particular vibration causes a change in dipole moment
• The IR spectrometer irradiates a sample with a continuum of IR radiation; those photons that can couple with the vibrating bond elevate it to the next higher vibrational energy level (increase in A)
• When the bond relaxes back to the n0 state, a photon of the same n is emitted and detected by the spectrometer; the spectrometer “reports” this information as a spectral band centered at the n of the coupling
• The position of the spectral band is dependent on bond strength and atomic size
• The intensity of the peak results from the efficiency of the coupling; e.g. vibrations that have a large change in dipole moment create a larger electrical field with which a photon can couple more efficiently
25
IR Spectroscopy
I. IntroductionG. The IR Spectrum – Factors that affect group frequencies
Remember, most interesting molecules are not diatomic, and mechanical or electronic factors in the rest of the structure may effect an IR band
From a molecular point of view (discounting phase, temperature or other experimental effects) there are 10 factors that contribute to the position, intensity and appearance of IR bands
1. Symmetry2. Mechanical Coupling3. Fermi Resonance4. Hydrogen Bonding5. Ring Strain6. Electronic Effects7. Constitutional Isomerism8. Stereoisomerism9. Conformational Isomerism10. Tautomerism (Dynamic Isomerism)
26
IR Spectroscopy
I. IntroductionG. The IR Spectrum – Factors that affect group frequencies
1. Symmetry H2O• For a particular vibration to be IR active there must be a
change in dipole moment during the course of the particular vibration
• For example, the carbonyl vibration causes a large shift in dipole moment, and therefore an intense band on the IR spectrum
• For a symmetrical acetylene, it is clear that there is no
permanent dipole at any point in the vibration of the CC bond. No IR band appears on the spectrum
C O
+ - vibrationC O
+ -
C C C Cvibration
27
IR Spectroscopy
I. IntroductionG. The IR Spectrum – Factors that affect group frequencies
1. Symmetry H2O• Most organic molecules are fortunately asymmetric, and
bands are observed for most molecular vibration• The symmetry problem occurs most often in small, simple
symmetric and pseudo-symmetric alkenes and alkynes
• Since symmetry elements “cancel” the presence of bonds where no dipole is generated, the spectra are greatly simplified
H3C C C CH3
H3C C CH2C CH3
C C
CH3
CH3
H3C
H3C
C C
H2C
CH3
H3C
H3C
CH3
symmetric
psuedo-symmetric
28
IR Spectroscopy
I. IntroductionG. The IR Spectrum – Factors that affect group frequencies
1. Symmetry H2O• Symmetry also effects the strength of a particular band• The symmetry problem occurs most often in small, simple
symmetric and pseudo-symmetric alkenes and alkynes
• Since symmetry elements “cancel” the presence of bonds where no dipole is generated, the spectra are greatly simplified
H3C C C CH3
H3C C CH2C CH3
C C
CH3
CH3
H3C
H3C
C C
H2C
CH3
H3C
H3C
CH3
symmetric
psuedo-symmetric
29
IR Spectroscopy
I. IntroductionG. The IR Spectrum – Factors that affect group frequencies
2. Mechanical Coupling• In a multi-atomic molecule, no vibration occurs without
affecting the adjoining bonds
• This induces mixing and redistribution of energy states, yielding new energy levels, one being higher and one lower in frequency
• Coupling parts must be approximate in E for maximum interaction to occur (i.e. C-C and C-N are similar, C-C and H-N are not)
• No interaction is observed if coupling parts are separated by more than two bonds
• Coupling requires that the vibration be of the same symmetry
30
IR Spectroscopy
I. IntroductionG. The IR Spectrum – Factors that affect group frequencies
2. Mechanical Coupling• For example, the calculated and observed n for most C=C
bonds is around 1650 cm-1
• Butadiene (where the two C=C systems are separated by a dissimilar C-C bond) the bands are observed at 1640 cm-1 (slight reduction due to resonance, which we will discuss later)
• In allene however, mechanical coupling of the two C=C systems gives two IR bands – at 1960 and 1070 cm-1 due to mechanical coupling
• For purposes of this course, when we discuss the group frequencies, we will point out when this occurs
C C C
H
HH
H
31
IR Spectroscopy
I. IntroductionG. The IR Spectrum – Factors that affect group frequencies
3. Fermi Resonance• A Fermi Resonance is a special case of mechanical coupling
• It is often called an “accidental degeneracy”
• In understanding this, for many IR bands, there are “overtones” of the fundamental (the n’s you are taught) at twice the wavenumber
• In a good IR spectrum of a ketone (2-hexanone, here) you will see a C=O stretch at 1715 cm-1 and a small peak at 3430 cm-1 for the overtone
overtone
fundamental
32
IR Spectroscopy
I. IntroductionG. The IR Spectrum – Factors that affect group frequencies
3. Fermi Resonance• Ordinarily, most overtones are so weak as not to be
observed
• But, if the overtone of a particular vibration coincides with the band from another vibration, they can couple and cause a shift in group frequency and introduce extra bands
• If you first looked at the IR (working “cold”) of benzoyl chloride, you may deduce that there were two dissimilar C=O bonds in the molecule
C
Cl
O
33
IR Spectroscopy
I. IntroductionG. The IR Spectrum – Factors that affect group frequencies
3. Fermi Resonance• In this spectrum, the out of plane bend of the aromatic C-H
bonds occurs at 865 cm-1; the overtone of this band coincides with the fundamental of C=O at 1730 cm-1
• The band is “split” by Fermi resonance (1760 and 1720 cm-
1)
C
Cl
O
34
IR Spectroscopy
I. IntroductionG. The IR Spectrum – Factors that affect group frequencies
3. Fermi Resonance• Again, we will cover instances of this in the discussion of
group frequencies, but this occurs often in IR of organics• Most observed:
- Aldehydes – the overtone of the C-H deformation mode at 1400 cm-1 is always in Fermi resonance with the stretch of the same band at 2800 cm-1
- The N-H stretching mode of –(C=O)-NH- in polyamides (peptides for the biologists and biochemists) appears as two bands at 3300 and 3205 cm-1 as this is in Fermi resonance with the N-H deformation at 1550 cm-1
C
H
O
35
IR Spectroscopy
I. IntroductionG. The IR Spectrum – Factors that affect group frequencies
4. Hydrogen Bonding• One of the most common effects in chemistry, and can
change the shape and position of IR bands
• Internal (intramolecular) H-bonding with carbonyl compounds can serve to lower the absorption frequency
O
H
O
O
CH3
1680 cm-1
O
O
CH3
1724 cm-1
36
IR Spectroscopy
I. IntroductionG. The IR Spectrum – Factors that affect group frequencies
4. Hydrogen Bonding• Inter-molecular H-bonding serves to broaden IR bands due
to the continuum of bond strengths that result from autoprotolysis
• Compare the two IR spectra of 1-propanol; the first is an IR of a neat liquid sample, the second is in the gas phase – note the shift and broadening of the –O-H stretching band
Neat liquid
Gas phase
37
IR Spectroscopy
I. IntroductionG. The IR Spectrum – Factors that affect group frequencies
4. Hydrogen Bonding• Some compound, in addition to intermolecular effects for
the monomeric species can form dimers and oligomers which are also observed in neat liquid samples
• Carboxylic acids are the best illustrative example – the broadened O-H stretching band will be observed for the monomer, dimer and oligomer
O
OH
Monomer
O
OH
O
OH Dimer
O
OH
O OH O O
HOligomer
38
IR Spectroscopy
I. IntroductionG. The IR Spectrum – Factors that affect group frequencies
5. Ring Strain• Certain functional group frequencies can be shifted if one
of the atoms hybridization is affected by the constraints of bond angle in ring systems
• Consider the C=O band for the following cycloalkanones:
1815 1775 1750 1715 1705 cm-1
• We will discuss the specific cases for these shifts during our coverage of group frequencies
O OO O O
39
IR Spectroscopy
I. IntroductionG. The IR Spectrum – Factors that affect group frequencies
6. Electronic Effects - Inductive• The presence of a halogen on the a-carbon of a ketone (or
electron w/d groups) raises the observed frequency for the p-bond
• Due to electron w/d the carbon becomes more electron deficient and the p-bond compensates by tightening
X
C
O
40
IR Spectroscopy
I. IntroductionG. The IR Spectrum – Factors that affect group frequencies
6. Electronic Effects - Resonance• One of the most often observed effects
• Contribution of one of the less “good” resonance forms of an unsaturated system causes some loss of p-bond strenght which is seen as a drop in observed frequency
O
O
1684 cm-1 1715 cm-1
C=O C=O
C CC
O
C CC
O
vs.
41
IR Spectroscopy
I. IntroductionG. The IR Spectrum – Factors that affect group frequencies
6. Electronic Effects - Resonance• In extended conjugated systems, some resonance
contributors are “out-of-sync” and do not resonate with a group
• Example:
H2N C CH3
O
Strong resonance contributor
vs. N
O
O
CCH3
O
Poor resonance contributor(cannot resonate with C=O)
CH3C
OX X = NH2 CH3 Cl NO2
1677 1687 1692 1700 cm-1
42
IR Spectroscopy
I. IntroductionG. The IR Spectrum – Factors that affect group frequencies
6. Electronic Effects - Sterics• Consider this example:
• In this case the presence of the methyl group “misaligns” the conjugated system, and resonance cannot occur as efficiently
• The effects of induction, resonance and sterics are very case-specific and can yield a great deal of information about the electronic structure of a molecule
O
C=O: 1686 cm-1
O
C=O: 1693 cm-1
CH3
43
IR Spectroscopy
III. Group Frequencies and AnalysisA. Introduction
1. When approaching any IR spectrum be sure to use the larger-to-smaller region approach- do not immediately focus on any one single peak (even –OH or C=O)
2. From the Hooke’s Law derivation we are using we find that the IR can be conveniently be divided into four major regions:
Bonds to H Triple bonds Double bonds Single Bonds
O-HN-HC-H
C≡CC≡N
C=OC=NC=C
C-CC-NC-OC-X
“Fingerprint Region”
4000 cm-1 2700 cm-1 2000 cm-1 1600 cm-1 400 cm-1
44
IR Spectroscopy
III. Group Frequencies and AnalysisA. Introduction
3. If supporting information is available – molecular formula, chemical inferences – (i.e. this was the product of an oxidation reaction), assume this information is correct and the analysis of the IR should support it (later in your careers you can doubt information given to you)
4. If a molecular formula is available, do an HDI!
5. Many texts list various methods for approaching an IR spectrum; use the method that works best for you and stick to it.
6. The most common mistakes in spectral analysis are those of “jumping the gun” to a conclusion (usually based on some small, insignificant peak) or taking a random haphazard approach to the spectrum (gee, here is an IR, oh, let’s start looking for phosphorus this time)
Be methodical, develop a scheme and stick to it!
45
IR Spectroscopy
III. Group Frequencies and AnalysisBefore we begin – Each functional group will be described as follows:
Group General – What is most recognizable? What makes it different from
similar groups?
Group Frequencies (cm-1):
Bondobserved
n in cm-1 type of vibration Exceptions and things to watch
Scale on bottom summarizes band positions and strengths Strong - Medium - Weak -
46
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Alkanes General – due to the small electronegativity difference between C
and H, hydrocarbon bands are of medium intensity at best and give simple spectra
Group Frequencies (cm-1):
C-H 3000-2800
Stretch Strained ring systems may have higher n
-CH2- ~1465 Methylene bend (scissor)
-CH3 ~1375 Methyl bend (sym)
-(CH2)4-
~720 Rocking motion 4 or more –CH2- (long chain band)
C-C Not interpretively useful, small weak peaks
47
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Alkanes – Dodecane – C12H26
48
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Alkanes – Cyclopentane – C5H10
49
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Alkanes Additional – If the 1400-1350 region is free of interference, the
presence of certain alkyl groups can be discerned:
H
H
CC
Methylene Methyl
Scissor1465
H
H
CC
H
Bendasymm
1450
H
H
CC
H
Bendsymm
1375
usually overlap 1380 1370C
CH3
CH3
gem-dimethyl
13701390C
CH3
CH3
CH3
t -butyl
50
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Alkanes Additional – Example: Compare 2,2-dimethylpentane vs. 2-methylhexane:
vs.
51
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Alkenes General – slightly more complex than alkanes; asymmetric C=C is
observed as well as the sp2-C-H stretch. Still, bands are weak to medium in intensity
Group Frequencies (cm-1):=C-H 3095-3010
Stretch - Diagnostic for unsaturation- may be aromatic as well
=C-H 1000-650
Out-of-plane (oop) bend
- Can be used to determine degree of substitution
C=C 1660-1600
Stretch - Can be reduced by resonance- Symmetrical C=C do not absorb- trans- weaker than cis-
52
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Alkenes – 1-octene – C8H16
Note – you still have alkane present!
53
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Alkenes – trans-4-octene – C8H16
Note – absence of C=C band, shouldering of C-H band
54
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Alkenes – cis-2-pentene – C5H10
Note – shouldering of C-H band
55
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Alkenes – cyclopentene – C5H8
Note – increased complexity due to ring vibrationsH H
56
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Alkenes Substitution – The out of plane =C-H bend produces strong bands
but interference can come from aromatic rings (similar oop) and C-Cl bonds (~700)
monosubstituted
cis-1,2
trans-1,2
1,1-disubstitued
trisubstituted
tetrasubstituted
R
RR
R
R
R
R
RR
R
R
R
R
R
1000 900 800 700
none, with weak C=C
57
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Alkenes Substitution – The monosubstitued band is very reliable; and the
variance induced by electronic effects is observed
monosubstituted (R-)
monosubstitued w/lone pair group(ex. –Cl, -F, -OR)
monosubstitued w/conj. group(ex. C=O, CN)
The shifts are similar for 1,1-disubstitued systems
R
1000 900 800 700
overtone usually observed
G
G
58
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Alkenes Rings – Incorporation of a double bond endocyclic or exocyclic to a ring may shift the observed band
Endocyclic: Ring strain shifts the C=C band to lower n (ex. cyclopropene)
The adjacent C-C bond couples with the C=C system – if the resulting component vector is along the line of the C=C bond an increase in n occurs – this reaches a minima at 90o for cyclobutene (no net component along C=C bond) and rises again with cyclopropene
1646 1611 1566 1656nC=C 1650
59
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Alkenes Rings – Endocyclic: If C=C at a ring fusion, absorption is reduced as if one further carbon was removed from the ring:
The presence of additional alkyl groups on the ring dramatically raises nC=C
nC=C 1611
RRR
R RR
nC=C 1656
nC=C 1566
1788 1883
1641 1675
60
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Alkenes Rings – Exocyclic: these C=C bonds give an increase in absorption n with decreasing ring size:
As the angle between the two C-C bonds is reduced – more p character is required (sp = 180°, sp2 = 120°, sp3 = 109.5°, “sp>3” = <109°The p character of the double bond is reduced, but the stronger s bond is strengthened to a greater degree
Think of the allene example (“2-membered ring”) as an extreme example
nC=C 1940 1780 1678 1657 1651
61
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Alkynes General – can be symmetric, psuedo-symmetric or internal – greatly
reducing the number of observed bands
Group Frequencies (cm-1):
C-H ~3300 Stretch - Diagnostic for terminal alkyne
CC ~2150 Stretch - Can be reduced by resonance-Symmetrical and psuedo-sym. CC do not absorb
C-H 900-700 Bend (Text does not list)
Possible not to observe any bands for the CC system
62
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Alkynes – 1-hexyne – C6H10
Nice terminal, asymmetric, well behaved alkyne
CHC
63
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Alkynes – 3-hexyne – C6H10
A not-so-nice, internal, symmetrical alkyne
CC
64
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Alkynes – 1-hexyne – C6H10
Nice terminal, asymmetric, well behaved alkyne
CHC
65
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Mononuclear aromatic rings General – not true alkenes; most of the small bands associated with
them are not of diagnostic value; electronic effects of a single group on the ring can change the observed bands drastically
Group Frequencies (cm-1):
-C-H 3050-3010
Stretch Also for alkenes
C-H 900-690 Out of plane (oop) bend Can be used to determine substitution pattern
2000-1667
Overtone and combination bands
If observed, similar too oop
=C-H 1600-1400
Ring stretch – observed as two doublets (1600, 1580, 1500 & 1450)
Greatly dependent on substituents
66
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Mononuclear aromatic rings – toluene – C7H8
Typical mono-substituted (EDG) ring
CH3
67
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Mononuclear aromatic rings – o-xylene – C8H10
Typical ortho-substituted (EDG) ring
CH3
CH3
68
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Mononuclear aromatic rings – m-xylene – C8H10
Typical meta-substituted (EDG) ring
CH3
CH3
69
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Mononuclear aromatic rings – p-xylene – C8H10
Typical para-substituted (EDG) ring
CH3
CH3
70
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Mononuclear aromatic rings – a-methylstyrene – C9H10
Conjugated mono-substituted ring
CCH3
H2C
71
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Mononuclear aromatic ringsSubstitution – The aromatic out of plane =C-H bend produces strong
bands but interference can come from alkenes (similar oop) and C-Cl (~700)
Consider this region to only be reliable for alkyl-, alkoxy-, halo-, amino-, and acetyl substituted rings
Interpretation is often unreliable for nitro-, carboxylic- and sulfonic groups
The overtone of these bands is the dominant source of the combination and overtone bands observed at 2000-1667
72
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Mononuclear aromatic ringsSubstitution –
900 800 700 600
mono
ortho
meta
para
1,2,4
1,2,3
1,3,5
73
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Mononuclear aromatic ringsSubstitution – The aromatic combination and overtone bands are a
set of weak absorptions that occur from 2000-1667. This is often obscured by C=O
mono
ortho
meta
para
1,2,4
1,2,3
1,3,5
The general shape of the pattern is used for determining substitution pattern; typically only a neat liquid sample gives an intense enough set of bands for analysis
74
IR Spectroscopy
III. Group Frequencies and AnalysisB. The Hydrocarbons
Polynuclear and Hetero- aromatic ringsGeneral – All bands for these aromatic systems are similar to the
mononuclear systems; shifts should be assumed, and analysis would be case-by-case
N
S
O
N
N
HS
75
IR Spectroscopy
III. Group Frequencies and AnalysisC. sp3 Oxygen – Alcohols, phenols and ethers
Alcohols General – the best recognized group on carefully selected spectra,
but H-bonding effects can drastically change the position, intensity and shape of the O-H band
Group Frequencies (cm-1):
O-H (free)
3650-3600
Stretch Seen in dilute solution or gas phase spectra
O-H (H-bond)
3400-3300
Stretch The “classic” H-bonded band, seen in addition to the free band in solution
C-O-H 1440-1220
Bend Often obscured by -CH3 bend
C-O 1260-1000
Stretch Can be used to determine 1o, 2o, 3o or phenolic structure
76
IR Spectroscopy
III. Group Frequencies and AnalysisC. sp3 Oxygen – Alcohols, phenols and ethers
Alcohols – 1-octanol
Neat liquid sample gives classic spectrum
HO
77
IR Spectroscopy
III. Group Frequencies and AnalysisC. sp3 Oxygen – Alcohols, phenols and ethers
Alcohols – 1-octanol
Same sample in dilute CCl4 solution (solvent bands deleted for clarity)
HO
78
IR Spectroscopy
III. Group Frequencies and AnalysisC. sp3 Oxygen – Alcohols, phenols and ethers
Phenols – p-cresol
Presence of aromatic bands, sharper -OH
OH
79
IR Spectroscopy
III. Group Frequencies and AnalysisC. sp3 Oxygen – Alcohols, phenols and ethers
Alcohols –Substitution – Using the position of the C-O stretching band, it is
possible to suggest a 1o, 2o, 3o or phenolic structure to the alcohol; but these should be considered as base values, that may be changed by the effects of conjugation or an adjacent ring system
base valuephenol 1220
tertiary 1150
secondary 1100
primary1050
OH
OH
OH
OH
HC C
OHnC-O 1070
nC-O 1070
nC-O 1017
nC-O 1060
nC-O 1030
80
IR Spectroscopy
III. Group Frequencies and AnalysisC. sp3 Oxygen – Alcohols, phenols and ethers
EthersGeneral – like alkynes, the simplicity of the spectra may allow them
to pass unnoticed – deduce from molecular formula if one should be present
Group Frequencies (cm-1):
C-O 1300-1000
Stretch (asymm.) Absence of C=O and O-H will confirm it is not ester or alcohol
Simple alkyl ethers usually one band at 1120, aryl alkyl ethers give two bands – 1250 & 1040
81
IR Spectroscopy
III. Group Frequencies and AnalysisC. sp3 Oxygen – Alcohols, phenols and ethers
Ethers – diispropyl ether
Spectrum dominated by all other functionality
O
82
IR Spectroscopy
III. Group Frequencies and AnalysisC. sp3 Oxygen – Alcohols, phenols and ethers
Ethers –Additional Types Aryl and vinyl ethers – The effect of conjugation gives the C-O bond
a small amount of double bond character, raising the observed n
Furthermore, strongly asymmetric systems (aryl alkyl and vinyl alkyl ethers) may show an additional weak C-O band for the symmetric stretch at 1040 and 850 respectively
H2C CH
O R H2C CH
O R
83
IR Spectroscopy
III. Group Frequencies and AnalysisC. sp3 Oxygen – Alcohols, phenols and ethers
Ethers –Additional Types Epoxides – Most important bands are the ring deformation bands at
nasym 950-815 and nsym 880-750
Weaker “breathing mode” band is present at 1280-1230
Acetals and Ketals – Give four or five unresolved bands in the 1200-1020 region
O
R
O
R
O R
R
R
O
R
O R
H
84
IR Spectroscopy
III. Group Frequencies and AnalysisD. sp3 Nitrogen – Amines
Amines – Once presence is determined, the substitution at nitrogen is easy to determine; only the 3° amine may present a problem
Group Frequencies (cm-1):
N-H (-NH2)
3650-3600(2 bands)1640-1560
Stretch (sym. and asym.)
Bend
N-H(-NHR)
3400-3300(1 band)1500
Stretch
Bend
For alkyl amines, very weak – for aromatic 2° amines, stronger
N-H ~800 Oop bend
N-N 1350-1000
Stretch Remember 3° amines have no N-H bands
85
IR Spectroscopy
III. Group Frequencies and AnalysisD. sp3 Nitrogen – Amines
1° Amine – tert-butylamine
Two band –NH2 peak appears as small “w”NH2
86
IR Spectroscopy
III. Group Frequencies and AnalysisD. sp3 Nitrogen – Amines
2° Amine – dibutylamine
Note weakness of –NH- band (can be mistaken as C=O overtone, if carbonyl is present)
HN
87
IR Spectroscopy
III. Group Frequencies and AnalysisD. sp3 Nitrogen – Amines
3° Amine – tributylamine
Difficult to discern from alkane – molecular formula for confirmation almost requisite
N
88
IR Spectroscopy
III. Group Frequencies and AnalysisD. sp3 Nitrogen – Amines
Ammonium Salts
Almost certainly never encountered in neat samples, but an important component of amino acids and many pharmaceuticals
Group FrequenciesN-H 3300-
2600Stretch 1° salts are at the higher n
end of this band, 3° salts at the lower endAdditional band sometimes obs. at 2100
N-H 1600-1500
Bend 1° as two bands (sym. And asymm.), 2° at the upper end of this range, 3° absorbs weakly
89
IR Spectroscopy
III. Group Frequencies and AnalysisD. sp3 Nitrogen – Amines
Ammonium Salts – anilinium hydrochloride
Spectrum is of a KBr disc sample:
NH H
H
Cl
90
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
General – Along with alcohols, the most ubiquitous group on the IR spectrum. Although it is easy to determine if the C=O is present, deducing the exact functionality and factors that influence the position of the band provide the challenge
Base C=O Frequencies (cm-1):C=O 1810 Stretch (sym.) Anhydride band 1
1800 Acid Chloride
1760 Anhydride band 2
1735 Ester
1725 Aldehyde
1715 Ketone
1710 Carboxylic Acid
1690 Amide
91
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
General – The carbonyl C=O frequency is very sensitive to the effects we went over previously – a quick recap
Electronic Effects: Inductive vs. Resonance:
On first inspection, the ester, amide and acid halide/anhydride all possess lone pairs of electrons that can resonate with the C=O (which should lower n)
O
O
O
Cl
O
NH2
O
R
C N O F
ClS
92
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
General – Electronic Effects: Inductive vs. Resonance:
In the case of an oxygen or chlorine being adjacent to the carbonyl, each of these atoms resist the positive charge in the contributing resonance structure, and the inductive effect becomes a stronger factor
O
OO
O
O
O
C N O F
ClS
This inductive effect draws in s electrons from the C=O, which strengthens the p bond – these carbonyls appear at higher n
93
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
General – Electronic Effects: Inductive vs. Resonance:
In the case of nitrogen, it is less electronegative than oxygen and has a greater acceptance of the positive charge in the contributing resonance structure, so the carbonyl is lowered in n
O
NHN
H
O
O
NH
C N O F
ClS
The inductive effect of nitrogen compared to an sp2 carbon is negligible by comparison
94
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
General – Electronic Effects: Inductive vs. Resonance:
Likewise in aldehydes and ketones there is the inductive donation of electrons to the s bond of the carbonyl which slightly weakens and reduces the n of the p bond (and explains the small difference between aldehydes and ketones)
O
C N O F
ClS
The inductive effect of nitrogen compared to an sp2 carbon is negligible by comparison
95
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
General – Electronic Effects: Inductive vs. Resonance:
In addition, we discussed this effect in regards to a-halogenated carbonyls as one of the effects that can change group n
C N O F
ClS
The inductive effect of chlorine will draw s electrons through a-carbon, weakening the C=O s and strengthening the p
96
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
General – Electronic Effects - Resonance:
Not only is the C=O n lowered by the effects of conjugation, the peak may also be broadened or split by the contribution of the two electronic conformers
The s-cis absorbs at higher n than the s-trans. Why?
C
C
C
O
R
s-cis
C
C
C
R
O
s-trans
97
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
General – Ring Strain Effects:C=O groups that can be incorporated into a ring are sensitive to this effect. As ring size decreases more p-character must be used to make the single bonds take on the smaller angle (re: sp>3 = <109°). The p component of the C=O is weakened, but the s-bond strengthened, raising the overall n
Cyclic ketones, esters (lactones), amides (lactams) and anhydrides exhibit this behavior
To clear up confusion – there are two ways to strengthen the C=O
1) Remove s bond character – p bond becomes more stronger (better overlap) – this is a result inductive w/d
2) Remove p bond character – s bond becomes stronger – ring constraint
O
O
O
NH
O
O
O
O
98
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
General – H-bonding effects:C=O groups are reduced in n if some of the electron density is tapped off to form H-bonds:
This effect can be inter- or intra-molecular:
99
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
1. Ketones – Simplest carbonyl group, for a single carbonyl compound, implied by a lack of any other functionality except hydrocarbon
Group Frequencies (cm-1):C=O 1715 Stretch (sym.) n Base, sensitive to change
conj. w/C=C
1700-1675
nC=C reduced to 1644-1617
conj. w/Ph
1700-1680
nring 1600-1450
C=O 1815-1705
Decreased ring size raises n
1300-1100
BendC
C
C
O
100
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
1. Ketones – 2-hexanone
Typical aliphatic ketone
O
101
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
1. Ketones – 4-methylacetophenone
Typical aromatic ketone,
O
102
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
1. Ketones – Simplest carbonyl group, for a single carbonyl compound, implied by a lack of any other functionality except hydrocarbon
Group Frequencies (cm-1):C=O 1715 Stretch (sym.) n Base, sensitive to change
conj. w/C=C
1700-1675
nC=C reduced to 1644-1617
conj. w/Ph
1700-1680
nring 1600-1450
C=O 1815-1705
Decreased ring size raises n
1300-1100
BendC
C
C
O
103
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
2. Aldehydes – Presence of the unique carbonyl C-H bond differentiates this group from ketones
Group Frequencies (cm-1):
C=O 1725 Stretch (sym.) n Base, sensitive to change
conj. w/C=C
1700-1680
nC=C reduced to 1640
conj. w/Ph
1700-1660
nring 1600-1450
2820, 2720
Stretch Fermi doublet; Higher nband often obscured by sp3 C-H
R
C
H
O
104
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
2. Aldehydes – isovaleraldehyde
Typical aliphatic aldehyde – note appearance of Fermi doublet and C=O overtone
H
C
O
105
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
2. Aldehydes – anisaldehyde
Typical aromatic aldehyde, note how C=O obscures the combination and overtone region – oop region would be used to determine substitution
H
O
O
106
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
3. Carboxylic Acids – Various H-bonding effects lead to messy spectra, especially in the upper frequency ranges – be aware of the effects of monomeric, dimeric and oligomeric species on the spectrum
Group Frequencies (cm-1):C=O 1710 Stretch (sym.) n Base, sensitive to change; conjugation gives reduced n
C-O 1320-1210
Stretch
O-H 3400-2400
Stretch Overlaps C-H region in most cases; multiple “sub-peaks” can be seen for the dimeric and oligomeric species – simplified in non-polar solution or gas phase spectra
107
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
3. Carboxylic Acids – propionic acid
Aliphatic carboxylic acid – neat sample vs. CCl4 solution (right)
108
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
3. Carboxylic Acids – o-toluic acid
Aromatic carboxylic acid, larger non-polar “end” of the molecule cuts down on the hydrogen bonding seen with the smaller, previous propionic acid
HO
O
109
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
3. Carboxylic Acids - Salts
Salts are expressed as possesing one single and one double bond – the true picture is one that is isoelectronic with the nitro group, with two bonds to oxygen with a bond order of 1.5
Group Frequencies:
16001400
Stretch (asymm.)Stretch (sym.)
C
O
O
110
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
3. Carboxylic Acids - Salts – ammonium benzoate
Here is an example of ammonium and carboxylate moieties:
O
O
N
H
HH
H
111
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
3. Carboxylic Acids – Amino Acids – L-alanine
Amino Acids combine the features of carboxylate and ammonium salts:
H3N CH C
CH3
O
O
112
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
4. Esters – Ester oxygen has an electron withdrawing effect that tends to draw in electrons within the C=O system, strengthening it compared to other carbonyls
Group Frequencies (cm-1):
C=O 1735 Stretch (sym.) n Base, sensitive to change
conj. C=C
1735-1715
nC=C reduced to 1640-1625
w/Ph 1735-1715
nring 1600-1450
conj. of sp3 O
1765-1760
1850-1740
nC=O increases with smaller ring
C-O 1300-1000
Stretch, 2 bands
CO
O
113
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
4. Esters – methyl butyrate
Simple aliphatic ester
O
O
114
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
4. Esters – methyl m-bromobenzoate
Conjugation on the carbonyl end:
Br
O
O
115
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
4. Esters – phenyl acetate
Conjugation on the sp3 oxygen end:O
O
116
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
5. Amides – Amide nitrogen acts as a conjugating group with C=O, reducing double bond character; amide nitrogen appears similar to amime, including the effects of substitution
Group Frequencies (cm-1):C=O 1685 Stretch (sym.) n Base, sensitive to change
Can be as low as 1630 w/conj.
N-H ~3300 Stretch Similar to amines, but typically more intense
nC=O increases with smaller ring
N-H 1640-1550
Bend
N-H ~800 oop bend
CNH
O
117
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
5. Amides – pivalamide
Primary aliphatic amide
NH2
O
118
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
5. Amides – 2-pyrrolidone
Cyclic secondary amide - lactam
HN O
119
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
6. Anhydrides – With acid halides, typically the highest n C=O; appears as two bands for the symmetric and asymmetric stretching modes
Group Frequencies (cm-1):C=O 1830-
1800Stretch (asym.) n Base, sensitive to change
conj. C=C
1778-1740
Stretch (sym.) Two bands of variable relative intensity
nC=O increases with smaller ring
C-O 1300-900 Stretch, multiple bands
O OO
120
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
6. Anhydrides – iso-butyric anhydride
Typical anhydride
O
O O
121
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
7. Acid Halides – Acid bromides and iodides are not often encountered; acid chlorides are the most prevalent (and useful)
Group Frequencies (cm-1):
C=O 1810-1775
Stretch (sym.) n Base, sensitive to change
conj. w/Ph
add. band
Fermi resonance with combination and overtone region of aromatic ring
C-Cl 730-550 Stretch If below 600, not observed using NaCl windows
C-Br 650-510 Stretch Typically too low to obs.
C-I 600-485 Stretch Typically too low to obs.
122
IR Spectroscopy
III. Group Frequencies and AnalysisE. Carbonyls
7. Acid Halides – propionyl chloride
Overtones of low n peaks can confuse some spectra
123
IR Spectroscopy
III. Group Frequencies and AnalysisF. sp2 and sp Nitrogen compounds
1. Nitriles – The “other” triple bond group observed in IR, due to the higher dipole change during the stretching vibration, this band is more intense than CCs.
Group Frequencies (cm-1):CN 2250 Stretch (sym.) n sensitive to change from
conjugation; usually stronger than CC
124
IR Spectroscopy
III. Group Frequencies and AnalysisF. sp2 and sp Nitrogen compounds Carbonyls
1. Nitriles – benzonitrile
125
IR Spectroscopy
III. Group Frequencies and AnalysisF. sp2 and sp Nitrogen compounds
2. Imines and Oximes – Often referred to as “derivatives” of carbonyl compounds, these groups are not often encountered in routine IR obs.
Group Frequencies (cm-1):C=N(imine and oxime)
1685-1650
Stretch (sym.) n sensitive to change from conjugation; usually stronger than CC
O-H(oxime)
3250-3150
Stretch H-bond effects
N-O(oxime)
965-930 Stretch
126
IR Spectroscopy
III. Group Frequencies and AnalysisF. sp2 and sp Nitrogen compounds
2. Imines and Oximes – acetone oxime
127
IR Spectroscopy
III. Group Frequencies and AnalysisF. sp2 and sp Nitrogen compounds
3. Isocyanates and Isothiocyanates – Reactive groups, not often observed in routine qualitative IR
Group Frequencies (cm-1):
N=C=O
~2270 Stretch (sym.) broad n band – coupled vibration
N=C=S
~2125 Stretch (1 or 2 bands) broad n band – coupled vibration
128
IR Spectroscopy
III. Group Frequencies and AnalysisF. sp2 and sp Nitrogen compounds
3. Isocyanates and Isothiocyanates– tert-butyl isocyanate
129
IR Spectroscopy
III. Group Frequencies and AnalysisF. sp2 and sp Nitrogen compounds
4. Nitro – Useful, easily incorporated group on aromatic rings, less often encountered on alkyl compounds
Group Frequencies (cm-1):
1600-15301390-1300
Stretch (asymm.)Stretch (sym.)
Aliphatic nitro
1550-14901355-1315
Stretch (asymm.)Stretch (sym.)
Aromatic nitro
R N
O
O
130
IR Spectroscopy
III. Group Frequencies and AnalysisF. sp2 and sp Nitrogen compounds
4. Nitro – o-nitrotoluene
131
IR Spectroscopy
III. Group Frequencies and AnalysisG. Sulfur
1. Thiols and Sulfides – Sulfur, due to its large size shifts most observed IR bands to lower frequencies – often out of the observed region
Group Frequencies (cm-1):S-H(thiol)
2550 Stretch (sym.) Unique region of IR spectrum
C-S-C No useful information
132
IR Spectroscopy
III. Group Frequencies and AnalysisG. Sulfur
1. Thiol (Mercaptan) – 1,2-ethanethiol
133
IR Spectroscopy
III. Group Frequencies and AnalysisG. Sulfur
2. Sulfoxides and Sulfones – Oxidized sulfur, the SO bonds are useful for determining oxidation state, if the presence of sulfur is known
Group Frequencies (cm-1):SO 1050 Stretch (sym.)
OSO ~1375~1150
Stretch (asymm.)Stretch (sym.)
134
IR Spectroscopy
III. Group Frequencies and AnalysisG. Sulfur
2. Sulfoxide (Mercaptan) – di-butyl sulfoxideBe wary of water in the spectrum of sulfoxides
135
IR Spectroscopy
III. Group Frequencies and AnalysisG. Sulfur
2. Sulfone– di-butyl sulfone
136
IR Spectroscopy
III. Group Frequencies and AnalysisG. Sulfur
3. Sulfonic Acids, Sulfonamides and Sulfonates – Sulfur equivalent of the carboxylic acid derivatives; the O or N groups act as we have observed
Group Frequencies (cm-1):
OSO ~1375~1150
Stretch (asymm.)Stretch (sym.)
As for sulfones – groups bound to sulfur identify the group, just as with the carboxylic acid derivatives differ from ketones
S-O(acid & sulfonate)
1000-650
Stretch May appear as several bands
O-H & N-H
As for the carboxylic acid derivatives
137
IR Spectroscopy
III. Group Frequencies and AnalysisG. Sulfur
3. Sulfonamides – p-toluenesulfonamide
138
IR Spectroscopy
III. Group Frequencies and AnalysisH. Phosphorus
1. Phosphines – Phosphorus in its lowest oxidation state – many bands that overlap with other useful regions; exercise caution in interpretation using IR
Group Frequencies (cm-1):
P-H 2320-2270990-885
Stretch (sym.)Bend
PH2 1090-1075840-810
Bend, two bands
P-CH3 1450-13951350-1255
Bend, two bands
P-CH2- 1440-1400
Bend
139
IR Spectroscopy
III. Group Frequencies and AnalysisH. Phosphorus
1. Phosphines – tri-butylphosphine
140
IR Spectroscopy
III. Group Frequencies and AnalysisH. Phosphorus
2. Phosphine Oxides – More common to observe these phosphorus compounds
Group Frequencies (cm-1):
3. Phosphate Esters, Acids and Amides – Often encountered in biological systems
Group Frequencies (cm-1):
PO 1210-1140
Stretch (sym.)
PO 1300-1240
Stretch (sym.)
R-O 1088-920 Stretch, 1 or 2 band
P-O 845-725 Stretch
141
IR Spectroscopy
III. Group Frequencies and AnalysisH. Phosphorus
2. Phosphine Oxides, Phosphate Esters – tri-butylphosphate
142
IR Spectroscopy
III. Group Frequencies and AnalysisI. Halogens
1. Fluorides and Chlorides – Smaller halogen bonds to carbon in observed frequency range
Group Frequencies (cm-1):
• Bromides and Iodides – Not often obs. Due to low n of C-X stretch
Group Frequencies (cm-1):
C-F 1400-1000
Stretch (sym.) Monofluoroalkyl at lower nPolyfluoroalkyl at upper nAryl fluorides up to 1450
C-Cl 785-540 Stretch Different conformers may give split peaks
C-Br 650-510 Stretch Bend is obs. at ~1200
C-I 600-485 Stretch Bend is obs. at ~1150
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IR Spectroscopy
II. Instrumentation and Experimental AspectsA. The IR Spectrometer – Dispersive and Fourier Transform
1. Dispersive IR Spectrometers• All spectrometers consist of four basic parts that are
coupled with all four parts of the spectroscopic process - irradiation, absorption-excitation, re-emission-relaxation and detection.
Irradiation: Spectrometer needs to generate photons hn hn hn
Detection-reemission : Spectrometer needs to detect the photons emitted by the sample and ascertain their energy
En
erg
y
Absorption-Excitation: Spectrometer needs to contain the sample
hn
Relaxation
rest state rest state
excited state
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IR Spectroscopy
II. Instrumentation and Experimental AspectsA. The IR Spectrometer – Dispersive and Fourier Transform
1. Dispersive IR Spectrometers• Those four parts are:
1. Source/Monochromator2. Sample cell3. Detector/Amplifier4. Output
• Dispersive IR spectrometers were the first IR instruments, however their simplicity and longevity allows them to continue in service – for most routine organic analyses their speed and resolution is adequate
• For the most part, their design is austere and relies on simple mechanics and optics to generate a spectrum, very similar to simply rotating a glass prism to see different bands of visible light
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IR Spectroscopy
II. Instrumentation and Experimental AspectsA. The IR Spectrometer – Dispersive and Fourier Transform
1. Dispersive IR Spectrometers• Here is a general schematic:
146
IR Spectroscopy
II. Instrumentation and Experimental AspectsA. The IR Spectrometer – Dispersive and Fourier Transform
1. Dispersive IR Spectrometers• Source is a heated nichrome wire which produces a broad
band continuum of IR light (as heat)• The beam is directed through both the sample and a
reference cell• A rapidly rotating sector (beam chopper) continuously
switches between directing the two beams to a diffraction grating
147
IR Spectroscopy
II. Instrumentation and Experimental AspectsA. The IR Spectrometer – Dispersive and Fourier Transform
1. Dispersive IR Spectrometers• The diffraction grating slowly rotates, such that only one
narrow frequency band of IR light is at the proper angle to reach the detector
• A simple circuit compares the light from the sample and reference and sends the difference to a chart recorder
148
IR Spectroscopy
II. Instrumentation and Experimental AspectsA. The IR Spectrometer – Dispersive and Fourier Transform
1. Dispersive IR Spectrometers• On the older instruments the motor in the chart recorder
was synchronized (& calibrated) to the motor on the diffraction grating
• Because each spectrum is the result of the tabulation of the spectroscopic process at each frequency individually, it is said to record the spectrum in the frequency domain
149
IR Spectroscopy
II. Instrumentation and Experimental AspectsA. The IR Spectrometer – Dispersive and Fourier Transform
1. Dispersive IR Spectrometers• Advantages – simple, easy to maintain – last the life of the
source and moving parts• Disadvantages – to cover the entire IR band of interest to
chemists it is necessary to use two diffraction gratings• At high q, the component frequencies are more spread out,
so the resulting spectra appear to have various regions expanded or compressed
• The limit to resolution is 2-4 cm-1
150
IR Spectroscopy
II. Instrumentation and Experimental AspectsA. The IR Spectrometer – Dispersive and Fourier Transform
2. Fourier Transform IR Spectrometers• FT-IR is the modern state of the art for IR spectroscopy• The system is based on the Michelson interferometer
o Laser source IR light is separated by a beam splitter, one component going to a fixed mirror, the other to a moving one and are reflected back to the beam splitter
o The beam splitter recombines the two to a pattern of constructive and destructive interferences known as an interferogram – a complex signal, but contains all of the frequencies that make up the IR spectrum
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IR Spectroscopy
II. Instrumentation and Experimental AspectsA. The IR Spectrometer – Dispersive and Fourier Transform
2. Fourier Transform IR Spectrometers• The resulting signal is essentially a plot of intensity vs.
time • Such information if plotted would look like the following:
• This is meaningless to a chemist – we need this to be in the frequency domain rather than time….
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IR Spectroscopy
II. Instrumentation and Experimental AspectsA. The IR Spectrometer – Dispersive and Fourier Transform
2. Fourier Transform IR Spectrometers• By applying a mathematical transform on the signal – a
Fourier transform – the resulting frequency domain spectrum can be observed
• FT-IRs give three theoretical advantages:1. Fellgett’s advantage – every point in the
interferogram is information – all wavelenghts are represented
2. Jacquinot’s advantage – the entire energy of the source is used – increasing signal-to-noise
3. Conne’s advantage – frequency precision – Dispersive instruments can have errors in the ability to move slits and gratings reproducibly – FTIR is internally referenced from its own beam
153
IR Spectroscopy
II. Instrumentation and Experimental AspectsA. The IR Spectrometer – Dispersive and Fourier Transform
2. Fourier Transform IR Spectrometers• Justik’s advantage – does it give me what I need
1. Single-beam instrument – collect a background (air has IR active molecules!)
2. Fast – all frequencies are scanned simultaneously
3. No referencing!
4. Computer based – scaling and editing of the spectrum to squeeze out the most data; spectra are proportional (no stretching or squeezing of regions), comparison with spectral libraries
• Disadvantages – expenisve relative to dispersive instruments, and the components take more expertise and service calls to replace
154
IR Spectroscopy
II. Instrumentation and Experimental AspectsB. The IR Spectrometer – Experimental aspects
1. Sample size – typically the size of the beam – mm’s mg’s
2. Non-destructive – sample can be recovered with varying degrees of difficulty
3. Liquid samples – the easiest IR spectra are those of “neat” liquid samples• Solid samples are too dense for good IR spectra – inter-
molecular coupling of vibrational states occurs and peaks are greatly broadened
• In the liquid state full 3-D motion is available, and these effects are averaged out and diminished
• The thickness of a sample can be decreased to reduce these effects further
Thin film liquid samples are best!
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IR Spectroscopy
II. Instrumentation and Experimental AspectsB. The IR Spectrometer – Experimental aspects
3. Liquid samples• Sample cell cannot possess covalent bonds (SiO2, or glass
is out)
• The most common cell is a pair of large transparent “windows” of inorganic salts
• Most common:NaCl – cheap, transparent from 650 – 4000 cm-1, but
fragile• Less common – AgCl, KBr, etc. – if you need transparency
below 650, limit is practically 400
156
IR Spectroscopy
II. Instrumentation and Experimental AspectsB. The IR Spectrometer – Experimental aspects
4. Solution samples• One way solids can be handled is as a solution• Key is that the solvent picked will cover the least amount
of the spectrum as possible, as it will also be present• Common solvents typically are symmetrical, or have many
halogenated bonds – low cm-1: CCl4, CHCl3, CH2Cl2, etc.• The cell in this case is two NaCl (or other) windows with a
spacer, the sample is loaded via a syringe into the cell:
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IR Spectroscopy
II. Instrumentation and Experimental AspectsB. The IR Spectrometer – Experimental aspects
4. Solution samples• A newer method involves the use of a polyethylene matrix,
that will hold allow a solution sample to evaporate, leaving small portions of the sample embedded in the matrix
• The samples are “liquid-like”
• The only interference is that of hydrocarbon
158
IR Spectroscopy
II. Instrumentation and Experimental AspectsB. The IR Spectrometer – Experimental aspects
5. Solid Samples• The most common treatment for solid samples is to “mull”
them with thick mineral oil (high MW hydrocarbon) - Nujol®
• Just like with the polyethylene cards, the molecules of the sample are held in suspension within the oil matrix
• Again, the interference is that of hydrocarbon
159
IR Spectroscopy
II. Instrumentation and Experimental AspectsB. The IR Spectrometer – Experimental aspects
5. Solid Samples• The connoisseurs method (with no organic interference) is
to press the solid with KBr into a pellet• Under high pressure the KBr liquefies and entraps
individual molecules of the sample in the matrix• These spectra are the only spectra of solids that are as
interference free as liquids
160
IR Spectroscopy
II. Instrumentation and Experimental AspectsB. The IR Spectrometer – Experimental aspects
6. Differences in Spectral Appearence• Compare the following three IR spectra of p-cresol
Neat Sample
161
IR Spectroscopy
II. Instrumentation and Experimental AspectsB. The IR Spectrometer – Experimental aspects
6. Differences in Spectral Appearence• Compare the following three IR spectra of p-cresol
KBr Pellet
162
IR Spectroscopy
II. Instrumentation and Experimental AspectsB. The IR Spectrometer – Experimental aspects
6. Differences in Spectral Appearence• Compare the following three IR spectra of p-cresol
CCl4 Solution
163
IR Spectroscopy
II. Instrumentation and Experimental AspectsB. The IR Spectrometer – Experimental aspects
6. Differences in Spectral Appearence• Compare the following three IR spectra of m-nitroanisole
Nujol Mull
164
IR Spectroscopy
II. Instrumentation and Experimental AspectsB. The IR Spectrometer – Experimental aspects
6. Differences in Spectral Appearence• Compare the following three IR spectra of m-nitroanisole
KBr Pellet
165
IR Spectroscopy
II. Instrumentation and Experimental AspectsB. The IR Spectrometer – Experimental aspects
6. Differences in Spectral Appearence• Compare the following three IR spectra of m-nitroanisole
CCl4 Solution