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4th HR-AMS Clinic, Boulder,CO Paola Massoli Aerodyne Research Adding new ions into PIKA to account f marine organic aerosol ion fragments recautions for deciding when N contain ions peaks in fits are real or not

4th HR-AMS Clinic, Boulder,CO Paola Massoli Aerodyne Research

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1) Adding new ions into PIKA to account for marine organic aerosol ion fragments 2) Precautions for deciding when N containing ions  peaks in fits are real or not. 4th HR-AMS Clinic, Boulder,CO Paola Massoli Aerodyne Research. 1) Adding new ions into PIKA to account for - PowerPoint PPT Presentation

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Page 1: 4th HR-AMS Clinic, Boulder,CO Paola Massoli  Aerodyne Research

4th HR-AMS Clinic, Boulder,CO

Paola Massoli Aerodyne Research

1) Adding new ions into PIKA to account for marine organic aerosol ion fragments

2) Precautions for deciding when N containing ions  peaks in fits are real or not

Page 2: 4th HR-AMS Clinic, Boulder,CO Paola Massoli  Aerodyne Research

1) Adding new ions into PIKA to account for

marine organic aerosol ion fragments

Page 3: 4th HR-AMS Clinic, Boulder,CO Paola Massoli  Aerodyne Research

HR-ToF data collected (V mode)in marine environment

NaCl (m/z 58) Diff ~ 90 Hz

Broad shape due to surfacevaporization

Page 4: 4th HR-AMS Clinic, Boulder,CO Paola Massoli  Aerodyne Research

…..and its isotope (Na37Cl, 1/3 of intensity of parent ion)

Page 5: 4th HR-AMS Clinic, Boulder,CO Paola Massoli  Aerodyne Research

Found several “unknown”peaks in the MS

Likely halide clusters (Cl, Br) containing metals because

they are on the left side of the m/z (also in closed, surface

vaporization)

Page 6: 4th HR-AMS Clinic, Boulder,CO Paola Massoli  Aerodyne Research

Like this at m/z 125 (MnCl2)

Page 7: 4th HR-AMS Clinic, Boulder,CO Paola Massoli  Aerodyne Research

How do I make sure my guessed mass is right ?

Use the isotope ratios of Cl, Br etc….

If MnCl2 is real, there should be

1) MnClj37Cl at mz 127 (UMR value)

2) Mnj37ClCl at mz 129 (UMR value)

Page 8: 4th HR-AMS Clinic, Boulder,CO Paola Massoli  Aerodyne Research

MnClj37Cl

Page 9: 4th HR-AMS Clinic, Boulder,CO Paola Massoli  Aerodyne Research

Need to modify the HR ion lists

Page 10: 4th HR-AMS Clinic, Boulder,CO Paola Massoli  Aerodyne Research

Still some unknowns….

Page 11: 4th HR-AMS Clinic, Boulder,CO Paola Massoli  Aerodyne Research
Page 12: 4th HR-AMS Clinic, Boulder,CO Paola Massoli  Aerodyne Research

Use mmass.exe (public software)

Page 13: 4th HR-AMS Clinic, Boulder,CO Paola Massoli  Aerodyne Research
Page 14: 4th HR-AMS Clinic, Boulder,CO Paola Massoli  Aerodyne Research

…once you fitted all the peaks (and properly modified HR batch, family and frag tables)

Page 15: 4th HR-AMS Clinic, Boulder,CO Paola Massoli  Aerodyne Research

2) Precautions for deciding when N containing

ions  peaks in fits are real or not

Page 16: 4th HR-AMS Clinic, Boulder,CO Paola Massoli  Aerodyne Research

Average todo wave w/ C3H2N

Page 17: 4th HR-AMS Clinic, Boulder,CO Paola Massoli  Aerodyne Research

No C3H2N….there seems to be a residual signal to be fitted

Page 18: 4th HR-AMS Clinic, Boulder,CO Paola Massoli  Aerodyne Research

One run….no clear sign that C3H2N should be fitted

Page 19: 4th HR-AMS Clinic, Boulder,CO Paola Massoli  Aerodyne Research

Look at Ar (m/z 40)

Page 20: 4th HR-AMS Clinic, Boulder,CO Paola Massoli  Aerodyne Research

Look at SO (m/z 48)

Page 21: 4th HR-AMS Clinic, Boulder,CO Paola Massoli  Aerodyne Research

Bottom line- N containing peaks are small, and they usually fall in the tail

of big signals. The “peak broadening” can be an issue here

- Look at average todo wave vs single run

- Evaluate peak shape using Ar and SO

- Look at time series and their noise- Loot at correlation plots between main peak and small ion

(eg C4H4 and C3H2N of slide 16) to see if they co-vary: if yes, the small ion is not real

- Look at average todo wave vs single run

- Use W mode if you have it