1
DNA barcoding and diversity of groundwater oligochaetes in Benin (West Africa) Patrick Mar?n 1 , Moïssou Lagnika 2 , Gontran Sonet 3 and Moudachirou Ibikounle 2 541 Abstract Background: Groundwater is a major ecosystem in terms of biodiversity, endemism and relict species. However, its stygofauna, the obligate groundwater fauna, remains too oPen ignored, although present on all con?nents. Its knowledge is of par?cular interest for public health as groundwater is also the main drinking water reservoir on earth. This study aims to build a gene?c database of groundwater oligochaetes at the Beninese country, which can be used as a reference for future studies based on DNA barcoding. It comes in a larger framework using the stygofauna as an indicator for water quality. Results: 96 wells were sampled in 2015 and 2016, and COI barcodes were obtained from 126 specimens of the genera Aulophorus (Naididae) and Haplotaxis (Haplotaxidae), the main two oligochaete components in Beninese wells. Molecular data enabled an interes?ng comparison between both genera, in terms of species diversity, distribu?on, and dispersal capaci?es. The numerous specimens of the stygophile Aulophorus proved to consist of 4 species, widely distributed, with low intraspecific gene?c variability, sugges?ng an important dispersal capacity. In contrast, 7 poten?al species were iden?fied in the rare stygobio?c Haplotaxis, each of them being restricted to one sta?on, with one excep?on, so that each hydrogeographic basin can be characterized by its unique assemblage of Haplotaxis species. Significance: These first data suggests an interes?ng poten?al use of groundwater oligochaetes for water management in Benin: (1) the presence of Haplotaxis is an indicator of the phrea?c origin of water in wells and, as such, suggests good water quality; (2) in contrast, the presence of Aulophorus species in a well gives evidence of poor protec?on of the la^er against exogenous elements, which can have a nega?ve impact on water quality. Groundwater is the main drinking water reservoir on earth, but also a major ecosystem in terms of biological diversity. Maintaining groundwater quality and conserving its biodiversity are converging goals because the healthy func?oning of these systems is a^ested by their level of biodiversity. Groundwater biodiversity must be documented, protected and sustainably managed. Unfortunately, these habitats are s?ll “terra incognita” in African, sub-Saharan countries. Subterranean aquifer habitats: “terra incognita” FIGURE 2: Phylogene?c rela?onships between 23 specimens of the stygobiont genus Haplotaxis, based on COI sequences (maximum likelihood), and loca?on of sta?ons within the sub-watersheds of the Ouémé basin (Benin) from which the specimens were studied. Colour codes are used in order to match specimens and sta?ons. FIGURE 1: Phylogene?c rela?onships between 43 specimens of the stygophile genus Aulophorus, based on COI sequences (maximum likelihood), and loca?on of sta?ons within the sub-watersheds of the Ouémé basin (Benin) from which the specimens were studied. Colour codes are used in order to match specimens and sta?ons. pa^erns of biodiversity within the two main oligochaete components. The numerous specimens of the stygophile Aulophorus proved to consist of only 4 species, with a wide geographical distribu?on. In contrast, the obligate groundwater-dwelling (i.e. stygobiont) Haplotaxis genus may harbour up to 7 species, in spite of its rarity and restricted distribu?on, oPen limited to only one sta?on. It appears that each sub-watershed of the Ouémé hydrogeographic basin can be characterized by its own assemblage of Haplotaxis species. An unexpected oligochaete diversity 0829101-Delaya bureschi LM56_COI_ISH LM55__COI_ISH LM71_COI_BEN047 LM53_COI_BEN031 LM52_COI_BEN031 LM54_COI_BEN031 LM47_COI_BEN031 LM51__COI_BEN031 LM70_COI_BVS016 LM64_COI_BEN003 LM48_COI_BEN003 LM08_COI_BEN003 LM69_COI_BEN072 LM57_COI_ISH 100 94 LM67_COI_ISH 84 LM50_COI_BEN008 LM49_COI_BEN008 LM18_COI_BEN008 100 LM63_COI_BEN031 LM62_COI_BEN031 LM61_COI_BEN031 LM60_COI_BEN031 100 LM68_COI_BEN072 100 100 PhyML ln(L)=-3048.4 658 sites GTR 100 replic. 4 rate classes 0.05 This project suggests an interes?ng poten?al use for water management in Benin, as it seems possible that each underground basin can be characterized by its own assemblage of species. By sampling the water from wells we could also tell which basin it has come from, helping us map underground waterways. The project could eventually be expanded to the rest of the country, providing a complete reference for the whole of Benin. Biodiversity and water management in Benin Affilia?ons 1 Royal Belgian Ins7tute of Natural Sciences, O.D. Taxonomy & Phylogeny, 29 rue Vau7er, 1000 Brussels, Belgium. 2 Université d’Abomey-Calavi, Département de Zoologie, Laboratoire de Parasitologie et d’Ecologie parasitaire, Faculté des Sciences et Techniques, 01BP526, Cotonou, Benin 3 JEMU, Royal Belgian Ins7tute of Natural Sciences, 29 rue Vau7er, 1000 Brussels, Belgium JQ519897.1_Chaetogaster_diaphanus AF534839.1_Dero_vaga LM144_COI_BEN087 LM114_COI_BEN087 LM109_COI_BEN080 LM108_COI_BEN080 LM101_COI_BEN079 LM101-1-COI_BEN079 LM113_COI_BEN087 LM110_COI_BEN080 LM152_COI_BEN091 KP204260.1_Dero_furcata HQ691221.1_Dero_furcata AF534837.1_Dero_furcata LM93_COI_BEN074 LM97_COI_BEN075 LM94_COI_BEN074 89 LM27_COI_BEN015 LM25_COI_BEN015 LM82_COI_BEN068 LM83_COI_BEN068 LM84_COI_BEN068 LM89_COI_BEN060 LM95_COI_BEN075 LM141_COI_BVS20 LM140_COI_BVS20 98 100 LM128_COI_BVS02 LM127_COI_BVS01 LM126_COI_BVS01 88 100 LM106_COI_BEN092 LM125_COI_BEN091 LM124_COI_BEN091 LM151_COI_BEN091 LM79_BEN082 LM105_COI_BEN092 LM104_COI_BEN086 LM81_COI_BEN082 LM111_COI_BEN067 LM37_COI_BEN023 LM121_COI_081 LM115_COI_BEN087 71 100 100 LM99_COI_BEN078 LM120_COI_BEN081 LM117_COI_BEN089 LM01_COI_BEN001 LM02_COI_BEN001 LM100_COI_BEN078 LM118_COI_BEN088 72 85 100 AF534835.1_Dero_digitata AF534836.1_Dero_digitata AF534838.1_Dero_obtusa LM153_COI_BEN077 100 94 LM98_COI_BEN078 95 98 LM91_COI_BEN052 LM90_COI_BEN052 LM92_COI_BEN052 LM92-1_COI_BEN052 83 100 PhyML ln(L)=-3306.4 658 sites GTR 100 replic. 4 rate classes 0.02 Funding Sources/Acknowledgements A biodiversity inventory of about 100 Beninese wells in the large Ouémé basin, through DNA barcoding, has revealed contras?ng

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Page 1: 541 DNA barcoding and diversity of groundwater ...jemu.myspecies.info/.../DigitalPoster_iBOL_2017_541... · DNA barcoding and diversity of groundwater oligochaetes in Benin (West

DNAbarcodinganddiversityofgroundwateroligochaetesinBenin(WestAfrica)PatrickMar?n1,MoïssouLagnika2,GontranSonet3andMoudachirouIbikounle2

541

AbstractBackground:Groundwaterisamajorecosystemintermsofbiodiversity,endemismandrelictspecies.However,itsstygofauna,theobligategroundwaterfauna,remainstoooPenignored,althoughpresentonallcon?nents.Itsknowledgeisofpar?cularinterestforpublichealthasgroundwaterisalsothemaindrinkingwaterreservoironearth.Thisstudyaimstobuildagene?cdatabaseofgroundwateroligochaetesattheBeninesecountry,whichcanbeusedasareferenceforfuturestudiesbasedonDNAbarcoding.Itcomesinalargerframeworkusingthestygofaunaasanindicatorforwaterquality.Results:96wellsweresampledin2015and2016,andCOIbarcodeswereobtainedfrom126specimensofthegeneraAulophorus(Naididae)andHaplotaxis(Haplotaxidae),themaintwooligochaetecomponentsinBeninesewells.Moleculardataenabledaninteres?ngcomparisonbetweenbothgenera,intermsofspeciesdiversity,distribu?on,anddispersalcapaci?es.ThenumerousspecimensofthestygophileAulophorusprovedtoconsistof4species,widelydistributed,withlowintraspecificgene?cvariability,sugges?nganimportantdispersalcapacity.Incontrast,7poten?alspecieswereiden?fiedintherarestygobio?cHaplotaxis,eachofthembeingrestrictedtoonesta?on,withoneexcep?on,sothateachhydrogeographicbasincanbecharacterizedbyitsuniqueassemblageofHaplotaxisspecies.Significance:Thesefirstdatasuggestsaninteres?ngpoten?aluseofgroundwateroligochaetesforwatermanagementinBenin:(1)thepresenceofHaplotaxisisanindicatorofthephrea?coriginofwaterinwellsand,assuch,suggestsgoodwaterquality;(2)incontrast,thepresenceofAulophorusspeciesinawellgivesevidenceofpoorprotec?onofthela^eragainstexogenouselements,whichcanhaveanega?veimpactonwaterquality.

Groundwateristhemaindrinkingwaterreservoironearth,butalsoamajorecosystemintermsofbiologicaldiversity.Maintaininggroundwaterqualityandconservingitsbiodiversityareconverginggoalsbecausethehealthyfunc?oningofthesesystemsisa^estedbytheirlevelofbiodiversity.Groundwaterbiodiversitymustbedocumented,protectedandsustainablymanaged.Unfortunately,thesehabitatsares?ll“terraincognita”inAfrican,sub-Saharancountries.

Subterraneanaquiferhabitats:“terraincognita”

FIGURE2:Phylogene?crela?onshipsbetween23specimensofthestygobiontgenusHaplotaxis,basedonCOIsequences(maximumlikelihood),andloca?onofsta?onswithinthesub-watershedsoftheOuémébasin(Benin)fromwhichthespecimenswerestudied.Colourcodesareusedinordertomatchspecimensandsta?ons.

FIGURE1:Phylogene?crela?onshipsbetween43specimensofthestygophilegenusAulophorus,basedonCOIsequences(maximumlikelihood),andloca?onofsta?onswithinthesub-watershedsoftheOuémébasin(Benin)fromwhichthespecimenswerestudied.Colourcodesareusedinordertomatchspecimensandsta?ons.

pa^ernsofbiodiversitywithinthetwomainoligochaetecomponents.ThenumerousspecimensofthestygophileAulophorusprovedtoconsistofonly4species,withawidegeographicaldistribu?on.Incontrast,theobligategroundwater-dwelling(i.e.stygobiont)Haplotaxisgenusmayharbourupto7species,inspiteofitsrarityandrestricteddistribu?on,oPenlimitedtoonlyonesta?on.Itappearsthateachsub-watershedoftheOuéméhydrogeographicbasincanbecharacterizedbyitsownassemblageofHaplotaxisspecies.

Anunexpectedoligochaetediversity

0829101-Delaya bureschi

LM56_COI_ISH

LM55__COI_ISH

LM71_COI_BEN047LM53_COI_BEN031

LM52_COI_BEN031LM54_COI_BEN031

LM47_COI_BEN031

LM51__COI_BEN031LM70_COI_BVS016

LM64_COI_BEN003LM48_COI_BEN003

LM08_COI_BEN003

LM69_COI_BEN072LM57_COI_ISH

100

94

LM67_COI_ISH

84

LM50_COI_BEN008

LM49_COI_BEN008

LM18_COI_BEN008100

LM63_COI_BEN031

LM62_COI_BEN031LM61_COI_BEN031

LM60_COI_BEN031

100

LM68_COI_BEN072

100

100

PhyML ln(L)=-3048.4 658 sites GTR 100 replic. 4 rate classes 0.05

Thisprojectsuggestsaninteres?ngpoten?aluseforwatermanagementinBenin,asitseemspossiblethateachundergroundbasincanbecharacterizedbyitsownassemblageofspecies.Bysamplingthewaterfromwellswecouldalsotellwhichbasinithascomefrom,helpingusmapundergroundwaterways.Theprojectcouldeventuallybeexpandedtotherestofthecountry,providingacompletereferenceforthewholeofBenin.

BiodiversityandwatermanagementinBenin

Affilia?ons1  RoyalBelgianIns7tuteofNaturalSciences,O.D.Taxonomy&Phylogeny,29rueVau7er,1000Brussels,Belgium.

2  Universitéd’Abomey-Calavi,DépartementdeZoologie,LaboratoiredeParasitologieetd’Ecologieparasitaire,FacultédesSciencesetTechniques,01BP526,Cotonou,Benin

3  JEMU,RoyalBelgianIns7tuteofNaturalSciences,29rueVau7er,1000Brussels,Belgium

JQ519897.1_Chaetogaster_diaphanusAF534839.1_Dero_vaga

LM144_COI_BEN087LM114_COI_BEN087LM109_COI_BEN080LM108_COI_BEN080LM101_COI_BEN079LM101-1-COI_BEN079LM113_COI_BEN087LM110_COI_BEN080LM152_COI_BEN091

KP204260.1_Dero_furcataHQ691221.1_Dero_furcataAF534837.1_Dero_furcata

LM93_COI_BEN074LM97_COI_BEN075LM94_COI_BEN074

89

LM27_COI_BEN015LM25_COI_BEN015LM82_COI_BEN068LM83_COI_BEN068LM84_COI_BEN068LM89_COI_BEN060LM95_COI_BEN075LM141_COI_BVS20LM140_COI_BVS2098

100

LM128_COI_BVS02LM127_COI_BVS01LM126_COI_BVS01

88

100

LM106_COI_BEN092LM125_COI_BEN091

LM124_COI_BEN091LM151_COI_BEN091

LM79_BEN082LM105_COI_BEN092LM104_COI_BEN086LM81_COI_BEN082LM111_COI_BEN067

LM37_COI_BEN023LM121_COI_081

LM115_COI_BEN08771

100

100

LM99_COI_BEN078LM120_COI_BEN081LM117_COI_BEN089

LM01_COI_BEN001LM02_COI_BEN001LM100_COI_BEN078LM118_COI_BEN08872

85

100

AF534835.1_Dero_digitataAF534836.1_Dero_digitata

AF534838.1_Dero_obtusaLM153_COI_BEN077

100

94LM98_COI_BEN078

95

98

LM91_COI_BEN052LM90_COI_BEN052LM92_COI_BEN052LM92-1_COI_BEN05283

100

PhyML ln(L)=-3306.4 658 sites GTR 100 replic. 4 rate classes 0.02

FundingSources/Acknowledgements

Abiodiversityinventoryofabout100BeninesewellsinthelargeOuémébasin,throughDNAbarcoding,hasrevealedcontras?ng