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Ames MPF
Dimitrios Spiliotopoulos, PhDXenometrix AG
www.xenometrix.chXenometrix AG
Gewerbestrasse 25CH-4123 Allschwil
Ames MPF
Xenometrix AG
Contents
• Mutagen Agents
• Principle of the Assay
– Pre-Incubation Ames Test
– Ames MPF (Ames Multiwell Plate Format)
• Comparing Ames Pre-Incubation Assay Vs. Ames MPF
– Experimental Requirements
– Results
• Ames MPF Kits
• Protocol
• Data Analysis
• Technical Issues
• Conclusions
Summary
Ames MPF
Xenometrix AG
Mutagen Agents
• agent (radiation, chemical) which increases the frequency of genetic mutations above the natural background level
• genotoxic, potentially cytotoxic and likely to be carcinogenic
• can be found everywhere: food, plants, water, soil, chemicals, flame retardants
Mutagens
Ames MPF
Xenometrix AG
• mutagens are tested assessing bacterial reverse mutation using deficiency mutants
– His– S. typhimurium
– Trp– E. coli
• aiming to detect point mutations, i. e.,
– base-pair substitutions (BP)
– frameshift mutation (FS)
• S9 liver fraction mimics mammalian metabolism to consider chemicals’ metabolism
Principle of the Assay[1]
Principle
[1]: PNAS (1972) 69(1):3128–32; PNAS (1973) 70(3):782–6; PNAS (1973) 70(8):2281–5; PNAS (1975) 72(3):979–83
Strains for the Regulatory Ames Plate TestOECD guidelines 471
strain mutation type
TA98TA100TA1537 (or TA97)TA1535TA102
hisD3052hisG46hisC3076G46hisG428
FS BP BP BP BP, [a]
wp2wp2uvrAwp2[pkM101]wp2uvrA[pkM101]
trpE65 [a]
available in Ames MPF kits
[a]: oxidizing agents, crosslinking agents, quinones (e. g., streptonigrin), …
Ames MPF
Xenometrix AG
4-Nitroquinoline-N-oxide
0
10
20
30
40
50
0 0.0625 0.125 0.25 0.5 1
mg/ml
Revetr
an
ts/4
8 w
ells
E-coli Combo
TA98
TA100
TA1535
TA1537
Principle of the AssayWhy so Many Strains?
Principle
Methyl methanesulfonate
0
10
20
30
40
50
0 0.125 0.25 0.5 1
mg/ml
Revetr
an
ts/4
8 w
ells
E-coli Combo
TA98
TA100
TA1535
TA1537
Streptonigrin
0
10
20
30
40
50
0 5 10 20 40
ng/ml
Revetr
an
ts/4
8 w
ells
E.coli Combo
TA98
TA100
TA1535
TA1537
Ames MPF
Xenometrix AG
Principle of the AssayWhy so Many Strains?
Principle
Mitomycin C (without S9)
0
5
10
15
20
25
0 50 100 200 400
ng/ml
Revert
atn
s/4
8 w
ells
uvrA
pKM
Combo
Hydrazine sulfate (without S9)
0
10
20
30
40
50
0 0.25 0.5 1
mg/ml
Revert
an
ts/4
8 w
ells
uvrA
pKM
Combo
Streptonigrin (without S9)
0
10
20
30
40
50
0 6.25 12.5 25 50
ng/ml
Revert
an
ts/4
8 w
ells
uvrA
pKM
Combo
uvrA
pKM
Ames MPF
Xenometrix AG
amino acid–deficient medium
Principle of the Assay[1]
Principle
control sample
auxotrophsHis+
[1]: PNAS (1972) 69(1):3128–32; PNAS (1973) 70(3):782–6; PNAS (1973) 70(8):2281–5; PNAS (1975) 72(3):979–83
• mutagens are tested assessing bacterial reverse mutation using deficiency mutants
– His– S. typhimurium
– Trp– E. coli
• point mutations, i. e.,
– base-pair substitutions
– frameshift mutation
• S9 liver fraction mimics mammalian metabolism to make up for the bacterial limited enzyme equipment
Ames MPF
Xenometrix AG
• mutagens are tested assessing bacterial reverse mutation using deficiency mutants
– His– S. typhimurium
– Trp– E. coli
• point mutations, i. e.,
– base-pair substitutions
– frameshift mutation
• S9 liver fraction mimics mammalian metabolism to make up for the bacterial limited enzyme equipment
Principle of the Assay[1]
Principle
auxotrophsprototrophs
control sample
spontaneousreversion
sample–inducedreversion
after two days…
control sample
# ofrevertant
colonies
[1]: PNAS (1972) 69(1):3128–32; PNAS (1973) 70(3):782–6; PNAS (1973) 70(8):2281–5; PNAS (1975) 72(3):979–83
amino acid–deficient medium
Ames MPF
Xenometrix AG
• mutagens are tested assessing bacterial reverse mutation using deficiency mutants
– His– S. typhimurium
– Trp– E. coli
• point mutations, i. e.,
– base-pair substitutions
– frameshift mutation
• S9 liver fraction mimics mammalian metabolism to make up for the bacterial limited enzyme equipment
Principle of the Assay[1]
Principle
control sample
spontaneousreversion
sample–inducedreversion
after two days…
control sample
# ofrevertant
colonies
[1]: PNAS (1972) 69(1):3128–32; PNAS (1973) 70(3):782–6; PNAS (1973) 70(8):2281–5; PNAS (1975) 72(3):979–83
Benzo[a]pyreneFound in coal tar, tobacco smoke and many foods (grilled meats).It is not mutagenic,
but its metabolites are.
auxotrophsprototrophs
amino acid–deficient medium
Ames MPF
Xenometrix AG
• mutagens are tested assessing bacterial reverse mutation using deficiency mutants
– His– S. typhimurium
– Trp– E. coli
• point mutations, i. e.,
– base-pair substitutions
– frameshift mutation
• S9 liver fraction mimics mammalian metabolism to make up for the bacterial limited enzyme equipment
Principle of the Assay[1]
Principle
control sample
spontaneousreversion
sample–inducedreversion
after two days…
control sample
# ofrevertant
colonies
[1]: PNAS (1972) 69(1):3128–32; PNAS (1973) 70(3):782–6; PNAS (1973) 70(8):2281–5; PNAS (1975) 72(3):979–83
sample– S9
sample+ S9
control– S9
control+ S9
auxotrophsprototrophs
amino acid–deficient medium
Ames MPF
Xenometrix AG
• the Ames assay was moved to a multiwell plate format
– liquid
– low-volume
– colorimetric read-out
• an aminoacid–deficient, bromocresolpurple–containing medium is used as Indicator Medium
– bromocresol purple turns yellow if the pH drops
• metabolically active cells (revertants!)
Multiwell plate format Ames
Ames MPF
10
14
1. no mutagenic activity2. auxotrophs3. bacteria die
1. mutagenic activity2. prototrophs 3. organic acids
10
14
pHpH
Ames MPF
Xenometrix AG
Three Ameses
Three Ames Assay
I. Plate incorporation not defined sample amount due to diffusion!immediate pouring➢ volume not always clearly defined during exposure➢ possible diffusion of sample and cofactors into lower agar
II. Pre–incubation defined sample amount in defined volumeliquid pre-incubation/exposure; dilution with top agar; pouring➢ defined volume during exposure
III. Ames MPF defined sample amount in defined volumeliquid exposure; dilution with indicator medium ➢ defined volume during exposure
minimal glucose agar
I.
pre-incubationmixture
top agar II. III. 24-well exposure plate
384-well plate
Ames MPF
Xenometrix AG
throughput
hands-on time
analysis time
plasticware
needed sample
needed S9
standardization
Comparison
more samples can be tested simultaneously!
241measuring points(per plate)
Pre-IncubationAmes
Ames MPF
automatable[1]
[1]: Mutat Res (2004) 558:181–97
Pre-Incubation Ames Test Vs.Ames MPF
epMotion 5070 automated pipetting system
Ames MPF
Xenometrix AG
throughput
hands-on time
analysis time
plasticware
needed sample
needed S9
standardization
Comparison
1 sample (+ controls), 5 strains (OECD 471), triplicates, +/– S9 mix
Pre-Incub. Ames Ames MPF
ready-to-use agar plates
Concentrations 5 6
Sample dilutions 5 min 5 min
Top agar (tube prep.) 35 min –
Addition sample, culture, S9 50 min 25 min
Plating 40 min –
Transfer to 384-well plates – 40 min
Data analysis 30–100 min c.ca 8 min
Total time c.ca 2 hh c.ca 1 h
Pre-Incubation Ames Test Vs.Ames MPF
Ames MPF
Xenometrix AG
1 sample (+ controls), 5 strains (OECD 471), triplicates, +/– S9 mix
Pre-Incub. Ames Ames MPF
ready-to-use agar plates
Concentrations 5 6
Sample dilutions 5 min 5 min
Top agar (tube prep.) 35 min –
Addition sample, culture, S9 50 min 25 min
Plating 40 min –
Transfer to 384-well plates – 40 min
Data analysis 30–100 min c.ca 8 min
Total time c.ca 5 hh c.ca 1 ½ h
Comparison
Pre-Incubation Ames Test Vs.Ames MPF
throughput
hands-on time
analysis time
plasticware
needed sample
needed S9
standardization
Ames MPF
Xenometrix AG
1 sample (+ controls), 5 strains (OECD 471), triplicates, +/– S9 mix
Pre-Incub. Ames Ames MPF
ready-to-use agar plates
Concentrations 5 6
Sample dilutions 5 min 5 min
Top agar (tube prep.) 35 min –
Addition sample, culture, S9 50 min 25 min
Plating 40 min –
Transfer to 384-well plates – 40 min
Data analysis 30–100 min c.ca 8 min
Total time c.ca 5 hh c.ca 1 ½ h
Comparison
error-pronecounting!
Pre-Incubation Ames Test Vs.Ames MPF
throughput
hands-on time
analysis time
plasticware
needed sample
needed S9
standardization
Ames MPF
Xenometrix AG
throughput
hands-on time
analysis time
plasticware
needed sample
needed S9
standardization
Comparison
…and remember the disposal costs!
Pre-Incubation Ames Test Vs.Ames MPF
Ames MPF
Xenometrix AG
throughput
hands-on time
analysis time
plasticware
needed sample
needed S9
standardization
Comparison
5 strains (OECD 471), ½ log dilution steps, triplicates, +/– S9 mix
Pre-Incub. Ames Ames MPF
Top dose 5 mg/plate 5 mg/ml
Compound (mg) 220 55
Pre-Incubation Ames Test Vs.Ames MPF
2 strains, ½ log dilution steps (6 conc.), triplicates, –/+ S9
Pre-Incub. Ames Ames MPF
Top dose:mg/plate mg/ml
5 2 1 5 2 1
Compound (mg) 87.6 35.2 17.6 21.9 8.8 4.4
4–fold reduction of the test item:samples might be limited in quantity
genotoxic impurities
Ames MPF
Xenometrix AG
Comparison
5 strains (OECD 471), ½ log dilution steps, triplicates
Pre-Incub. Ames Ames MPF
S9 fraction (ml)30% 15.57 1.35
10% 5.25 0.45
13–fold reduction of the S9 fraction: reduced number of sacrificed animals
Reuse, Reduce, Recycle
Pre-Incubation Ames Test Vs.Ames MPF
throughput
hands-on time
analysis time
plasticware
needed sample
needed S9
standardization
Ames MPF
Xenometrix AG
throughput
hands-on time
analysis time
plasticware
needed sample
needed S9
standardization
Comparison
Pre-Incubation Ames Test Vs.Ames MPF
database of results for the controls
S9 Certificate of AnalysisQC of the bacterial strains
Ames MPF
Xenometrix AG
Accordance
Accordance with Ames Agar Plate Test
Authors Chemicals Accordance (%)
Notes Explanation forDiscordant Results?
Ref.
Gee et al. 25 88 – –
1998. Mutat Res, 412:115–30.
Gervais et al. 42 company-own 83 –Mainly compounds that specifically revert E.coli and TA1535.
2003.EEMSposter.
Flückiger–Isleret al.
1984.2
(16/19)89.5% inter-lab accordance
–
2004. Mutat Res, 558:181–97.
Flückiger–Isler & Kamber
14 89–100 – –2006.EEMSposter.
Kamber et al. 71 84 –Chemicals requiring reductive metabolism using FMN (hamster liver S9).
2009.Mutagen, 24:359–66.
Flückiger–Isler & Kamber
15 equivocal to weakly positive
87(13/15)
High concordance with the ICH-compliant assay.
–2012. Mutat Res, 747:36–45.
EEMS: European Environmental Mutagen Society
Ames MPF
Xenometrix AG
• a direct comparison of pre-incubation Ames test and Ames MPF assay
same overnight culture(s), chemical, S9-mix preparation
• the methods showed accordance for 13/15 chemicals
some were variable between labs!
confirms the high concordance with the ICH[2]-compliant assay
• higher sensitivity in Ames MPF
+’ve weakly +’ve equivocals –’ve
increase over the baseline > 3-fold 2- < 3-fold ✘b ✘
statistically significant ✓a ✓a ✓ ✘
dose-response ✓a ✓a ✓ ✘
a: statistically significant at least in two adjacent doses or significant increase at the highest non-toxic dose level.b: non or only a single increase without any additional significance.
Weakly Positives and Equivocals[1]
Experimental Setup
[1]: Flückiger–Isler and Kamber, 2012. Mutat Res, 747:36–45[2]: International Conference on Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use
Accordance
Ames MPF
Xenometrix AG
[1]: Flückiger–Isler and Kamber, 2012. Mutat Res, 747:36–45
Weakly Positives and Equivocals[1]
Comparing the Results
Accordance
Ames MPF
Xenometrix AG
Weakly Positives and Equivocals[1]
Comparing the Results Correctly
[1]: Flückiger–Isler and Kamber, 2012. Mutat Res, 747:36–45
Accordance
Top dose (mg/ml)
Pre-Incub. MPF
7.1 5.0
Top dose (mg/ml)
Pre-Incub. MPF
5.0 5.0
Ames MPF
Xenometrix AG
“To assess the mutagenic potential of impurities, a single bacterial mutagenicity assay can be carried out with a fully adequate protocol according to ICH S2(R1) and OECD 471 guidelines... For degradants that are not feasible to isolate or synthesize or when compound quantity is limited, … bacterial mutagenicity testing could be carried out using a miniaturized assay format with proven high concordance to the ICH-compliant assay to enable testing at higher concentrations with justification…”
Weakly Positives and Equivocals[1]
Mutagenic Impurities
Accordance
Ames MPF
Xenometrix AG
• more than 139 chemicals have been tested so far using the Ames MPF assay
• chemicals are constantly tested to improve the assay database
Accordance with Ames Agar Plate TestWork in Progress
Accordance
Ames MPF
Xenometrix AG
Ames MPF samples
• pharmaceuticals
• chemicals
• cosmetics
• pesticides
• drinking water
• waste water
• river sediments
• food-packing material
• electronic cigarette
Ames MPF users
• labs in over 20 countries
• chemical, pharmaceutical and cosmetic industry
• EU and national governmental agencies
• environmental research organizazions
• CRO’s
• biopharma
• military
Ames KitsWhat Can I Use Ames MPF For?
Kits and Uses
Ames MPF
Xenometrix AG
Ames Kits
Ames MPF 98/100Ames II
ScreeningGenotoxic Impurities
Drinking water
Ames MPF 1535, 1537, E. coli Special chemical classes
Ames MPF Penta I• TA98• TA100• TA1535• TA1537• E. coli
ScreeningOECD 471–compliant
Ames MPF 98/100 AQUA waste water analysis
Kits and Uses
Ames MPF
Xenometrix AG
Ames Kits The Kit Content
Kits and Uses
kit name Ames II Ames MPF 98/100Ames MPFPENTA 1
Ames MPFPENTA 2
kit code(s) E10-213A10-210A01-210
C01-512C10-512
B01-513B10-513
strains
Salmonella
TAMix ✓ – – –
TA98 ✓ ✓ ✓ ✓
TA100 – ✓ ✓ ✓
TA1535 – – ✓ ✓
TA1537 – – ✓ ✓
E. coli
uvrA – – ✓ –
pKM101 – – ✓ –
uvrA(pKM101) – – – ✓
positive controls
2–nitrofluorene ✓ ✓ ✓ ✓
2–aminoanthracene ✓ ✓ ✓ ✓
4–nitroquinoline–N–oxide ✓ ✓ ✓ ✓
9–aminoacridine – – ✓ ✓
N4–aminocytidine – – ✓ ✓
2–aminofluorene – – ✓ ✓
growth media
Growth medium ✓ ✓ ✓ ✓
Ampicillin ✓ ✓ ✓ ✓
SalmonellaExposure Medium ✓ ✓ ✓ ✓
Indicator Medium ✓ ✓ ✓ ✓
E. coliExposure Medium – – ✓ ✓
Indicator Medium – – ✓ ✓
metabolic activation
S9 ✓ ✓ ✓ ✓
Ames MPF
Xenometrix AG
Ames Kits The Kit Content
Kits and Uses
Individual Xenometrix Ames MPF products can also be purchased.
Ames MPF
Xenometrix AG
Ames KitsA Few Points
• all products are QC’ed after production
• kit products can be individually purchased and
S9 cofactor kit (PCO-0800) is separately available
• while we warmly recommend to perform measurements in as many strains as possible in triplicate, other experimental designs (unicates, duplicates) are also possible for screening purposes
• support for data analysis
Kits and Uses
Ames MPF
Xenometrix AG
Quality Control performed for each bacterial lot includes, but is not limited to, the assessment of the following criteria
• presence of pKM101 plasmid
• defective DNA repair
• defective lipopolysaccharide cell wall
• bacterial cellular morphology and aggregation
• absence of bacterial contamination
• dose–response behavior for positive controls
Ames Kits QC and CoA
Kits and Uses
S9 Certificate of Analysis
Ames MPF
Xenometrix AG
Ames Kits Do I Have Everything I Will Need?
• Environmental shaker capable of 37°C, 250 rpm incubations with approx. 2.5 - 3 cm amplitude. For shakers with smaller amplitude, alternative incubation vessels and rotational speeds can be used
• 37°C dry incubator • Spectrophotometer to measure the optical density at 600 nm • 20 μl, 200 μl, and 1000 μl adjustable pipettes and sterile tips • 5-50 μl and 50-200 μl 8-channel pipettes • 8-channel repeating pipettor and sterile tips (highly recommended) • Light table for scoring results (recommended)
• 50 ml tubes with (filter) caps • 24-well plates • 384-well microtiter plates • 96-well microtiter plate • Reagent reservoirs • 5 ml and 10 ml pipettes • Spectrophotometer cuvettes • Solvents for sample dilution and solvent control • S9 buffer components*
*A ready-to-use kit available separately from Xenometrix containing phosphate buffer pH 7.4, MgCl2, KCl, G-6-P and NADP for preparing the S9 mix S9 Cofactor kit (Art. No. PCO-0800). This kit replaces the self-made S9 buffer components (for which the composition is provided in the Instructions for Use).
All plasticware must be sterile!
Kits and Uses
Ames MPF
Xenometrix AG
ProtocolDay 0
Protocol
1. prepare 10 ml only of medium and, if necessary (TA98, TA100 and pKM101), Ampicillin
2. thaw the bacterial stock:
- semisolid: disrupt the pellet in 200 µl and inoculate 25 µl
- liquid: inoculate 10 µl
3. make sure the bacteria will have enough air for the night
4. grow at 37°C for 14–16 hours shaking at 250 rpm (if using a 50-ml tube)
Prepare
Growth Medium
12
Bacterial
stock
grow at 37°C
for 12 – 15 hours
shaking at 250 rpm
4
Loose cap
3
Ames MPF
Xenometrix AG
Prepare sample
dilutions in
mw24 plates
2
ProtocolDay 1 – part 1/2
Protocol
1. check bacterial OD600 values
2. prepare sample and control dilutions
3. dilute bacterial culture in the Exposure Medium
- if needed, prepare S9 mix
4. expose the bacteria to the prepared samples
5. incubate at 37°C at 250 rpm
C–
C+
D6
D5
D4
D3
D2
D1
C–
C+
D6
D5
D4
D3
D2
D1
C–
C+
D6
D5
D4
D3
D2
D1
repl. #1 #2 #3
Dilute bacteria in
the Exposure
Medium
3
Incubate at 37°C
at 250 rpm5
Expose the bacteria
To the samples4
Ames MPF
Xenometrix AG
ProtocolDay 1 – part 2/2
Protocol
1. add Reversion Indicator Medium
2. transfer to 384-well plates
6 (=3×2) 384-well plates per sample dilution if testing with and without S9 (instead of 48 agar plates)
3. incubate at 37°C for two days
Add Reversion
Indicator Medium1
C–
C+
D6
D5
D4
D3
D2
D1
C–
C+
D6
D5
D4
D3
D2
D1
Transfer to 384-well
plate2
Incubate at 37°C
for two days.
3
Ames MPF
Xenometrix AG
ProtocolDay 3
Protocol
1. count the yellow wells and analyze the results.
Note: for the analysis of your data Xenometrix suggests to use a threshold based on the solvent control results of the experiment, namely the baseline, defined as the average of the solvent control’s positive wells plus one standard deviation.
C–
D1
D2
D3
D4
D5
D6
C+
Ames MPF
Xenometrix AG
Data Analysis
• Excel worksheets are provided for the analysis of the data generated with Ames II and Ames MPF and with Ames Penta (shown in the next slides)
• as per the generally accepted criteria, results are considered significant when
– 2-fold higher than the baseline:
• the baseline is defined as the sum of average and 1 standard deviation of the solvent control
– dose dependence:
• “A positive result in a spot test is generally not considered to be adequate evidence for mutagenicity. Mutagenicity should be confirmed by demonstrating a dose–response relationship…” Mutat Res (1985) 113:173–215
“Statistical methods may be used as an aid in evaluating the test results (…). However, statistical significance should not be the only determining factor for a positive response.” OECD 471
Data Analysis
Ames MPF
Xenometrix AG
Data Analysis – Penta“Concentrations” Worksheet
Data Analysis
Ames MPF
Xenometrix AG
Data Analysis – Penta“raw data” Worksheet
Data Analysis
Ames MPF
Xenometrix AG
Data Analysis – Penta“Summary” Worksheet
Data Analysis
Ames MPF
Xenometrix AG
Data Analysis – Penta “Graphs” Worksheet
Data Analysis
Ames MPF
Xenometrix AG
Technical IssuesGeneral Recommendations
• immediately store bacteria at –80°C and keep them at –80°C until use
do not re-freeze bacteria for later use: their growth and performance may be compromised!!
• the bacteria must have grown sufficiently well OD600 > 2.0 (with OD600 neg. control <0.05)
• solvents:
– DMSO is fine;
– if using volatile compounds and/or solvents, pipette fast the test item from the mw96 plate to the mw24 plate
• do not mix Salmonella and E. coli media: they have different compositions!
Technical (1/5)
Ames MPF
Xenometrix AG
• some strain intrinsically have higherspontaneous reversion rates
• for each lot of the bacterial strainsthe internal Quality Controlminimizes the chances of observinga high spontaneous reversion rate
• high rates of spontaneous reversiongenerally occur due to mishandlingduring the shipment
• the Instructions for Use provide a protocol to address this issueselecting a 2-day, cost-effectivesubculture pre-selection
• alternatively, new vials (new lots) can be shipped
Technical IssuesHigh Spontaneous Revertants
Technical (2/5)
Ames MPF
Xenometrix AG
Technical Issues48-Well Limit: Is It a Limit?
Technical (3/5)
In the presence of strong mutagens, the increase of revertants is…
● potentially unlimited in the Ames agar test
● plateauing at 48-well in the Ames MPF
but in the Ames MPF…
➢ repeated 48-well revertant counts confirm the results for strong mutagens
➢ lower number of spontaneous revertants
➢ higher sensitivity (detection of lowest mutagenic concentration)
strong mutagen
Ames MPF
Xenometrix AG
Technical Issues48-Well Limit: Solvent Control
Technical (3/5)
15–30 100–200
40–70
Values referto the
agar plateAmes tests
Ames MPF
Xenometrix AG
Technical Issues48-Well Limit: Is It a Limit?
Technical (3/5)
strong mutagen weak mutagen
In the presence of strong mutagens, the increase of revertants is…
● potentially unlimited in the Ames agar test
● plateauing at 48-well in the Ames MPF
but in the Ames MPF…
➢ repeated 48-well revertant counts confirm the results for strong mutagens
➢ lower number of spontaneous revertants
➢ higher sensitivity (detection of lowest mutagenic concentration)
Ames MPF
Xenometrix AG
Fold Increase Over the Baseline
Technical Issues48-Well Limit: Is It a Limit? No.
Technical (3/5)
• Low spontaneous revertants → larger dynamic range
• Selection of cultures with low spontaneous revertant rate at Xenometrix with two Quality Controls
• The baseline adapts to the culture whether it is high spontaneous revertants (•) or low spontaneous revertants (•)
• Pass/Fail criteria for spontaneous revertants in Ames MPF
Number of Positive Wells
Ames MPF
Xenometrix AG
Fold Increase Over the Baseline
Technical Issues48-Well Limit: Is It a Limit? No.
Technical (3/5)
• Low spontaneous revertants → larger dynamic range
• Selection of cultures with low spontaneous revertant rate at Xenometrix with two Quality Controls
• The baseline adapts to the culture whether it is high spontaneous revertants (•) or low spontaneous revertants (•)
• Pass/Fail criteria for spontaneous revertants in Ames MPF
Number of Positive Wells
Ames MPF
Xenometrix AG
Technical IssuesCytotoxicity
Technical (4/5)
If cytotoxicity occurs, the dose range must be adjusted!
Note: this also applies to the agar plate Ames tests!
How can I detect cytotoxicity?
1. Dose-dependent reduction of revertant wells
With Ames MPF additional indications suggest cytotoxicity!
2. Increased brilliance of purple medium
3. Lipid droplets (bubbles) in the absence of S9
[sample]
revertants’number
mutagenicity
cytotoxicity
Ames MPF
Xenometrix AG
Technical IssuesCytotoxicity
Technical (4/5)
If cytotoxicity occurs, the dose range must be adjusted!
Note: this also applies to the agar plate Ames tests!
How can I detect cytotoxicity?
1. Dose-dependent reduction of revertant wells
With Ames MPF additional indications suggest cytotoxicity!
2. Increased brilliance of purple medium
3. Lipid droplets (bubbles) in the absence of S9
Ames MPF
Xenometrix AG
Technical IssuesCytotoxicity
Technical (4/5)
If cytotoxicity occurs, the dose range must be adjusted!
Note: this also applies to the agar plate Ames tests!
How can I detect cytotoxicity?
1. Dose-dependent reduction of revertant wells
With Ames MPF additional indications suggest cytotoxicity!
2. Increased brilliance of purple medium
3. Lipid droplets (bubbles) in the absence of S9
Ames MPF
Xenometrix AG
Technical IssuesColored Compounds
Technical (5/5)
2.05
s.c.
5.1
12.8
80
32
200
p.c.
µg/ml
orange sample
Ames MPF
Xenometrix AG
Ames MPF AssaysAccolades
Conclusions
Chapter 5Perspectives in genotoxicity screening“Ames II (Xenometrix, Switzerland) is a microplate-based fluctuation test version of the Ames test and probably the best Ames predictor.”
Chapter 9Mutation Research
New Paradigms for the Environmental Assessment, p. 26“Thus, the all-liquid format of the Ames II/MPF assay, which requires less test compound and allows for the use of multichannel pipettes, thus automating the pipetting steps, makes this procedure an attractive method to evaluate mutagenicity of a large number of samples at the same time - a common situation in environmental monitoring”.
… it has been proposed by the European Union-fundedREBECA project as a screening tool to determine whether
fungal biological control agents produce genotoxic/mutagenic metabolites which require further
attention in the regulatory risk assessment.
Chapter 2: The Ames II and Ames MPF Penta I Assay: A Liquid Microplate Format Modification of the Classic Ames Test
Chapter 10: Ames II and Ames Liquid Format
Mutagenicity Screening Assays
Ames MPF
Xenometrix AG
Advantages
• 4× less test sample necessary
• liquid microplate format allows for
– less hands-on time
– simultaneous processing of several replicates
– higher throughput
– potentially partial automation
• 12× less consumption of S9 – 3Rs[1]
• quick, easy, less error–prone colorimetric read-out
• less plasticware, less contaminated waste in environment
• listed explicitly in ICH M7 Guideline
• (depending on compound) higher sensitivity[1]: Replace, Reduce, Refine
Disadvantages
• not listed explicitly in OECD 471
• not same large database as agar plate method
Ames MPF AssaysConclusions
Conclusions
Ames MPF
Xenometrix AG
Questions?
Questions?
Ames MPF
Xenometrix AG
Contacts
Nicole Weiland, PhD CEOBusiness Development
Nicolas Nicaise Technical Support
Dimitrios Spiliotopoulos, PhDDevelopment and Production
Contacts
Ames MPF
Dimitrios Spiliotopoulos, PhDXenometrix AG
www.xenometrix.chXenometrix AG
Gewerbestrasse 25CH-4123 Allschwil