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Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

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Page 1: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Ammonia Toxicity ModelAMMTOX

Training Session Held 5 Dec 2005

Hosted by EPA Region VIII

Presented by Jim Saunders,

Colorado WQCD

Page 2: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Purpose of Training Session

• Explain rationale for model

• Identify data needs and sources, including options for use of site-specific data

• Demonstrate operation of model

• Work with test data sets

Page 3: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Assumptions and Disclaimers

• Familiarity with Excel is assumed

• VB programming is NOT covered

• Future tech support is not my job

• Merits of National Criteria are not open for discussion

• Ideas and suggestions presented in this session may not conform to policies of state or federal permitting agencies

Page 4: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Section 1: Concepts and Construction

Central Question:Where is there greatest risk of exceeding

stream standard?

Depends on pollutant behavior and control of toxicity

Page 5: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Location of Controlling Conditions

Control of Toxicity

Control of Concentration

Concentration + pH & Temp

Conservative Outfall Downstream, simple

Non-conservative Outfall Downstream, complex

Page 6: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

How do you handle a problem like Ammonia?

• Calculating permit limits becomes difficult when controlling conditions are displaced downstream

• Good news: solution likely to benefit discharger

Page 7: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

0

1

2

3

4

5

6

7

8

9

0 2 4 6 8 10

Miles below Outfall

pH

05101520253035404550

Acu

te S

tan

dar

d,

mg

/L

pH Acute Standard

Pattern of Toxicity, Simple Scenario• Initial

– pH: 6.6– Temp: 16.3

• Final– pH: 8.0– Temp: 10

• Rebound– pH: 0.2/mi– Temp: 0.7/mi

0

2

4

6

8

10

12

14

16

18

0 2 4 6 8 10

Miles below Outfall

Tem

per

atu

re o

r p

H

012345678910

Ch

ron

ic S

tan

dar

d,

mg

/L

pH Temperature Chronic Standard

Page 8: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Pattern of Toxicity, Complex Scenario

• Simple Scenario pH, temperature

• Initial ammonia = 5.5

• Loss = 3/d• V= 2 fps

0

1

2

3

4

5

6

7

0 2 4 6 8 10

Miles below Outfall

Am

mo

nia

Co

nce

ntr

atio

n,

mg

/L

Chronic Standard Ammonia

Page 9: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Required Tasks

• Define d/s trajectory of stream standard

• Define d/s trajectory of ammonia concentration

• Determine maximum effluent concentration such that instream ammonia will not exceed standard at any point downstream

Page 10: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Trajectory of Standard

• Effect of effluent on stream chemistry generally elevates standard

• Effect is transitory

• Initial value of standard declines downstream because underlying controls (pH and temperature) trend separately toward “equilibrium” values

• Greatest risk of exceedance may occur anywhere between outfall and equilibrium conditions

Page 11: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

What is equilibrium?

• Stable pH and temperature characteristic of this mixture of effluent and stream water

• May differ from upstream conditions, especially if effluent flow is large

• Equilibrium is dynamic with substantial diel and seasonal variation in pH and temperature

• This variability must be captured in standard

Page 12: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Trajectories for pH and Temperature

• Initial mixed conditions defined from flow-weighted mean pH and temperature

• Effect of effluent on stream pH and temperature is transitory

• Initial mixed pH and temperature trend separately toward “equilibrium” values

• If the equilibrium value and the rate of change are known, pH or temperature can be predicted at any point downstream of the outfall

Page 13: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Setpoint: Equilibrium with Regulatory Twist

• pH and temperature associated with greatest risk of exceeding ammonia standard for equilibrium conditions

• Worst case in each month, subject to once-in-three-year exceedance

• Terminus for pH and temperature trajectories, not a fixed location

Page 14: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Why Obtaining Setpoint is Difficult

• Sole task of Recur model• Field grab samples form framework• Apply characteristics of temporal variation to

construct set of hourly values spanning entire period of record

• Calculate standards hourly and determine acute (1-h) and chronic (30-d) values consistent with once-in-three-year exceedance threshold

• Find associated pH (acute and chronic) and temperature (chronic)

Page 15: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Application for Setpoint

• Hidden hand – guides pH and temperature toward target with regulatory meaning

• Essential for producing d/s trajectory of ammonia standard, separately for acute and chronic

Page 16: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Back up a step....Incorporation of temporal variation

• pH and temperature in stream exhibit temporal variation of diel and seasonal scales...thus applies to standard, too

• Predictable diel pattern– Based on sine curve– Given amplitude and time of max, one grab

value can define complete 24-h pattern– Model contains defaults, or user can supply

Page 17: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Diel Patterns of Variation

• Pattern of each is predictable (sine curve)

• Asynchronous pH and temperature patterns

0

2

4

6

8

10

12

14

16

18

00:00 04:00 08:00 12:00 16:00 20:00 00:00

Tem

pera

ture

, o

C

7.0

7.2

7.4

7.6

7.8

8.0

8.2

8.4

8.6

8.8

9.0

pH

Temperature pH

Page 18: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Adjusting Grab Sample Data

• Translate grab sample to daily average or maximum using amplitude and time of maximum

Daily Mean

Daily Maximum

Grab Sample

Amplitude

0

1

2

3

4

5

6

7

8

9

10

0:00 6:00 12:00 18:00 0:00

Time of Day

Pre

dic

ted

Te

mp

era

ture

Page 19: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Implications for Toxicity

• Time of day matters

• Not a sine function

• Average toxicity is not same as toxicity based on average pH and temperature 0.0

0.2

0.4

0.6

0.8

1.0

1.2

1.4

0:00 4:00 8:00 12:00 16:00 20:00 0:00

Time of Day

pH

-dep

end

ent

Co

mp

on

ent

Page 20: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Empirical Seasonal Pattern

• Driven by pattern observed in recent historical record

• Temperature shows strong seasonal variation in mean; tracking air temperature

• pH shows strong seasonal variation in amplitude; result of biological activity

Page 21: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Seasonal Variation: Temperature

• Strong pattern• Monthly time step• Importance of

physical processes

0

5

10

15

20

25

30

Oct-92 Jul-93 Apr-94 Jan-95

Tem

per

atu

re,

oC

Max Min

Page 22: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Seasonal Variation: pH

• Seasonal change in maxima, but not in minima

• Amplitude varies across sites in same region

• Importance of biological processes

South Platte at Englewood

7.0

7.5

8.0

8.5

9.0

9.5

Dec-00 Apr-01 Jul-01 Oct-01 Jan-02 May-02

pH

Daily Max Daily Min

Page 23: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Next Task: Ammonia Trajectory

• Initial concentration determined by mass balance calculations

• Change in concentration d/s affected strongly by biological processes (i.e., non-conservative behavior)

• Dominant process: nitrification

• Others: uptake (-), ammonification (+)

• Model represents a net loss rate

Page 24: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Why Non-conservative Matters

• Nitrification reduces ammonia

• First order kinetics

• Any loss increases limits

0%10%20%

30%40%50%60%70%

80%90%

100%

0.0 0.5 1.0 1.5 2.0

Time, days

Am

mo

nia

Rem

ain

ing

K3=1 K3=2 K3=4 K3=8

Page 25: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

K3 Temperature Dependence

• Nominal rate applies at 20oC• Ambient rate sensitive to temperature (8%/oC)

0

5

10

15

20

25

30

0 5 10 15 20 25 30

Stream Temperature, oC

Am

bie

nt

K3,

per

day

K3=6 K3=2 K3=12

Page 26: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Revisit Scenario with New K3

• Interaction of loss rate and d/s trajectory of standard• Importance of site-specific data

0

1

2

3

4

5

6

7

0 2 4 6 8 10

Miles below Outfall

Am

mo

nia

Co

nce

ntr

atio

n,

mg

/L

Chronic Standard Ammonia (K3=3) Ammonia (K3=6)

Page 27: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Next Task: Linking Limits to Standards

• AMMTOX sets monthly limits by manual iteration (i.e., trial and error)

• Aiming for maximum effluent concentration such that instream ammonia will not exceed standard at any point downstream

Page 28: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Trial Iteration

0

1

2

3

4

5

6

7

0 2 4 6 8 10

Miles below Outfall

Am

mo

nia

Co

nce

ntr

atio

n,

mg

/L

Chronic Standard Ammonia (Co=5.5) Ammonia (Co=4.5)

Page 29: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Organization of AMMTOX

• Recurrence model– Defines setpoint conditions, integral to

mapping downstream trajectory of toxicity

• Reach Model– Predicts downstream pattern of stream

standard based on expected spatial patterns in pH and temperature

– Predicts downstream changes in total ammonia based on first order kinetics

– Employs graphical approach for setting permit limits

Page 30: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Section 2: Data Needs and Sources

• Setpoint Determination– Grab samples from equilibrium stream

conditions; 3-5 yrs, weekly-monthly– Diel patterns of variation for pH and

temperature (amplitude, time of max)• Default (3 levels for pH)• User supplied (confirm or replace default)

– Ecological Conditions• Implied by classification (warm vs. cold)• Local knowledge of fish community

Page 31: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Sampling Site Selection

• Ideal site: far enough downstream for rebound to be complete, yet not influenced by tributaries, etc.

• Practical site– Upstream OK if too many confounding

influences downstream– Small effluent: upstream or 2-4 mi downstream– Large effluent: trajectory based on interim sites

Page 32: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Site-Specific Characterization of Diel Patterns of Variation

• Summer (July-August best)

• Low flow

• Data logger: 15-min intervals; get amplitude and time of max

• Grab: sunrise for minima, mid- to late afternoon for maxima; get amplitude

• With either approach, a few sunny days will determine usefulness of defaults

Page 33: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

0

100

200

300

400

500

600

700

6:00 18:00 6:00 18:00 6:00

Time of Day

Su

nlig

ht,

W/m

2

7.6

7.8

8.0

8.2

8.4

8.6

8.8

9.0

pH

Light pH

Sunny Days and pH Amplitude

Page 34: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Sampling Time and Default Amplitude

7.20

7.40

7.60

7.80

8.00

8.20

8.40

00:00 06:00 12:00 18:00 00:00

Low Medium High

Page 35: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Define Ecological Setting for Reach Model

• Are salmonids present?– Default assumption might be yes for Cold

water classification– Affects pH component (applies to acute and

chronic standards)

• Are Early Life Stages (ELS) present?– Must specify for each month– Applies to all species in fish community– Affects temperature component (does not

apply to acute)

Page 36: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Salmonids and Effect of FAV

0

10

20

30

40

50

60

6.5 7.0 7.5 8.0 8.5 9.0

pH

CM

C,

mg

/L

Present Absent

Page 37: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Acute Values (CMC)

• 1-h average

• Nonlinear function of pH

• Not a function of temperature

• Linear function of FAV– Salmonids present: 11.23– Salmonids absent: 16.8

Page 38: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Temperature Dependence and ELS

• T<7oC; max effect of ELS

• 7<T<14.5oC; diminishing effect

• T>14.5oC; no effect of ELS

CCC Temperature Dependence

0.0

0.5

1.0

1.5

2.0

2.5

3.0

3.5

4.0

4.5

5.0

0 5 10 15 20 25 30

Temperature, oC

Ad

just

men

t T

erm

ELS present ELS absent

Page 39: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Chronic Values (CCC)

• 30-d average• Nonlinear function of pH• Linear function of FAV• Nonlinear function at higher temperature

– Invertebrate slope: 10-0.028*(T-25); T>7oC

• Linear function at lower temperature– ELS absent; invertebrate GMCV (1.45)

applies at T<7– ELS present; fish GMCV (2.85) applies at

T<14.5

Page 40: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Reach Model Inputs

• Flows

• Water Quality

• Basis for trajectories– Rebound– Setpoint– K3– Travel time

• Characteristics of standards

• Consistency with Recur Model (not linked)

Page 41: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Hydrologic Conditions

• Upstream: Regulatory low flow (e.g., DFLOW)

• Effluent: Design capacity

• Tributaries and diversions: preserve low flow regime; reconstructions and DFLOW by difference

• Seepage: Residual between gages; includes alluvial discharge, direct surface runoff and small, ungaged tributaries

Page 42: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Input Water Quality

• Avoid worst of worst scenarios

• Upstream: average or median

• Effluent (pH, temperature): average or median

• Seepage: average or median

• Diversions: no direct effect on WQ

Page 43: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Rebound Rates

• Default rates used in AMMTOX– pH: 0.2 units per mile– Temperature: 0.7 oC per mile

• Site-specific rates are very rare

• Produces gradual, linear shift toward setpoint conditions

Page 44: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Spatial Patterns of Variation

• Addition of effluent changes temperature and depresses pH in stream

• Shift is transitory, but can be dramatic

0

2

4

6

8

10

12

14

16

18

0 5 10 15

Distance, mi

Te

mp

era

ture

, oC

6.56.66.76.86.97.07.17.27.37.47.57.6

Temperature pH

Page 45: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Ammonia Loss Rate

• Measured for many CO streams

• Wide range of values; generous default

• Study design considerations– Paired samples d/s of mixing zone– Travel time critical; must be able to see

change in concentration– Detection limit and resolving power– Implications for DO modeling– Dilution by seepage vs. biological decay

Page 46: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Velocity

• Channel Geometry– Default– Site-specific: USGS Surface-water

Measurements

• Manning’s Eqn• Fixed Value; enter manually by reach• Special Considerations

– Acute and chronic can be set separately– Multiple equations or approaches can be used

when proper links are established

Page 47: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Time of Travel

St Vrain at Lyons

y = 0.0788x0.6405

R2 = 0.989

0.1

1

10

10 100 1000

Discharge, cfs

Av

era

ge

Ve

loc

ity,

ft/

s

Page 48: Ammonia Toxicity Model AMMTOX Training Session Held 5 Dec 2005 Hosted by EPA Region VIII Presented by Jim Saunders, Colorado WQCD

Design of Basic Sampling Program• What

– Stream: pH, temperature, time, ammonia (u/s)– Effluent: pH, temperature

• When– Stream: biweekly or monthly– Effluent: individual, not DMR summary

• Where– Upstream– Downstream (equilibrium conditions)

• Supplemental– Ammonia loss rate– Diel variation in pH and temperature– Seepage– Velocity