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Alexandre GramfortAssistant Prof. Telecom ParisTech / CEA Neurospin
http://martinos.org/mne
Anatomical pipeline for source localization
MNE software for processing MEG and EEG data, A. Gramfort, M. Luessi, E. Larson, D. Engemann, D. Strohmeier, C. Brodbeck, L. Parkkonen, M. Hämäläinen, Neuroimage, 2014
Organizing your data
├── MEG
│ └── daniel
│ └── somstim_raw.fif
└── subjects
├── fsaverage
└── daniel
study
$ recon-all -s ${SUBJECT} -i xy000000.nii -all
FreeSurfer recon
and just wait…
or better go to bed andcome back tomorrow…
$ recon-all -s daniel -i daniel_t1.nii -all
https://github.com/mne-tools/mne-scripts
Coregistration withmne_analyze
http://martinos.org/mne/stable/manual/analyze.html?highlight=coordinate%20alignment#cacehgcd
Manual page:
Getting help• Documentation:
• http://martinos.org/mne/
• http://martinos.org/mne/python_tutorial.html (python tutorial)
• http://martinos.org/mne/auto_examples/index.html (python examples)
• Mailing list:
• http://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis
• Code:
• https://github.com/mne-tools/mne-python (mne-python code)
• https://github.com/mne-tools/mne-scripts (mne shell scripts)