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Attila Szautner

Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

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Page 1: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

Attila Szautner

Page 2: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

TMA technology

Marked area

Matching area on the donor block

Recipient block

1.

2.

3.

Embedding

4.

5.

Scoring

Glass slide

Page 3: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

TMA technology

Marked area

Matching area on the donor block

Recipient block

1.

2.

3.

Embedding

4.

5.

Scoring

Glass slide

Page 4: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

TMA technology

Marked area

Matching area on the donor block

Recipient block

1.

2.

3.

Embedding

4.

5.

Scoring

Glass slide

Page 5: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

TMA technology

Marked area

Matching area on the donor block

Recipient block

1.

2.

3.

Embedding

4.

5.

Scoring

Glass slide

IHC, FISH

Page 6: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

TMA technology

Marked area

Matching area on the donor block

Recipient block

1.

2.

3.

Embedding

4.

5.

Scoring

Glass slide

IHC, FISH

Page 7: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

Advantages

• Save:

– Reagent

– Time

– Tissue

– Workforce

• Standardized laboratory conditions

• Central data handling

Page 8: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

Case Selection

• Collecting donor blocks

• Preparing clinical data

Page 9: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

Analysis of digital slides, Creating markers

Page 10: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

Workflow, Evaluation of TMA slides

TMA BLOCK CREATION

Case Center

SCANNING THE TMA SLIDES

EVALUATION & ANALYSIS

Slide preparation tools

DNA isolation, DNA amplification, DNA sequencing

PCR extraction

Page 11: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

TMA Module Software

• The TMA Module deals with simultaneous handling of many slides and cores

• Multi-user option (Consolidator function)

• Filter the spots in the gallery by different parameters (unscored – rescored)

• Statistical analysis

• Simple or Combined scoring scheme

Page 12: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

Workflow steps of the TMA Module

• Preparing the Excel sheet for the TMA project

• Spot finding

• Scoring and managing slides

• Export data and images

Page 13: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

Block1

Block3

Block2

Preparing the Excel sheet for TMA project

Page 14: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

Scoring and managing slides

• Combined Scoring

Page 15: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

Scoring and managing slides, Gallery

• Scoring

spots

• Ordering

spots

• Filtering

spots

Page 16: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

TMA Grand Master

• 72 block capacity:

12 recipient blocks, 60 donor blocks

• 4 donor punch and drill bit sizes:

0.6, 1, 1.5, 2 mm

• 2 digital cameras (1 for label and 1 for block view)

• Automated block and tool height measurement by sensor

• Separately controlled puncher and drill bit

• Parallel block feeding, drilling, punching and image capture

Page 17: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

TMA Grand Master

• Faster movements and faster workflow

• Computer-aided tasks:

– Recipient block layout design

– Assign a digitized slide to a donor block

– Data export to Excel

Page 18: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

TMA Grand Master

Page 19: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

+ =

Jpg image overlay

• Set the transparency near the block image

Page 20: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

Barcode reading

• Auto Barcode button

• 1D Barcode Types – Code 128, Code 93, EAN8, EAN13, UPC_A

• 2D Barcode Types – Datamatrix, Maxicode, Micropdf417, QRcode

Page 21: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

PCR in Grand Master

• Dedicated position

Page 22: Attila Szautner...Attila Szautner TMA technology Marked area Matching area on the donor block Recipient block 1. 2. 3. Embedding 4. 5. Scoring Glass slide TMA technology Marked area

Cleaning block

• Set the cleaning block

• Clean before each PCR extraction