Biology Edexcel Notes - B2

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    Topic 1The building blocks of cells

    1.1Plant and animal cells

    Most cells are too small to be seen with the naked eye therefore we use light microscope. In a light

    microscope, a beam of light passes through the cells.

    Electron microscopes pass a beam of electrons through the cells. They enable us to see in much

    more detail.

    You can work out the magnification of a light microscope using:

    Total magnification = magnifying power of eyepiece lens x magnifying power of objective lens

    The greater the resolving power, the clearer the image. Electron microscopes have a better

    resolving power than light microscopes.

    Resolving power = wavelength / 2

    Animal cells

    Cytoplasm Where most of the cellschemical reactions takeplace

    Cell membrane Controls the movement ofchemicals in and out of thecell

    Nucleus Contains chromosomes.Controls gene expression

    and mediates thereplication of DNA duringthe cell cycle.

    Mitochondria Where sugars are brokendown releasing energy.Includes a biochemicalprocess where respirationand energy productionoccurs.

    Plant cells

    Cell wall Made out of cellulose to strengthen the cell

    Vacuole Filled with cell sap to keep the cell turgid

    Chloroplasts Contain chlorophyll, which absorbs light energy for photosynthesis.

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    Bacterial cells

    Do not have mitochondria, chloroplasts or a nucleus (chromosomal DNA and loops of DNA called

    plasmid lie loose in the cytoplasm).

    Cell wall not made out of cellulose

    Some bacteria have a flagellum, which propels the cell through liquid.

    1.2DNA

    DNAdeoxyribonucleic acid

    DNA consists of two molecules that are arranged in a ladder-like structure called a Double Helix

    The two strands are held together by hydrogen bonds between pairs of bases.

    When a cell grows and divides into two, it first has to make a duplicate copy of each DNA molecule.

    This is done by the bonds breaking between the two strands, the strands unwinding, and then new

    bases joining each old strand to make new strands.

    A molecule of DNA is made out of several subunits called Nucleotides.

    Each nucleotide consists of:

    1) Phosphate groupwhich vitamins help form2) Pentose sugarfrom carbohydrates

    3) Nitrogenous basewhich proteins help form

    To crack the genetic code found in DNA, we need to look at the sequence of bases. Bases are

    arranged in triplets called codons.

    Bases consists of A (adenine), T (thymine), G (guanine) and C (cytosine). A will always join with T

    and G will always join to C to form complementary bases pairings.

    A gene is a section of DNA that codes for a protein. It is these proteins and combination of proteins

    which give us our phenotype.

    DNA can be easily extracted from cells by:

    Use a detergent/salt mixture to break up the membrane of cells and release the chromosomes

    Use a protein-digesting enzyme to break down the protein part of the chromosomes, releasing their

    DNA

    Add cold methanol, which precipitates the DNA. The strands are now clearly seen.

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    Discovery of DNA

    In the early 1950s two scientists, Rosalind Franklin and Maurice Wilkins, studied DNA using x-rays.

    Franklin produced an x-ray photograph that allowed two other researchers, James Watson and

    Francis Crick to work out the 3D structure of DNA.

    The structure of DNA was found to be a double helix.

    The Human Genome Project

    The genetic information in an organism is called its genome.

    The Human Genome Project began in 1989. It was very ambitious and had several aims, including:

    To work out the order or sequence of all the three billion base pairs in the human genome

    To identify all the genes

    To develop faster methods for sequencing DNA

    The sequencing project was finished in 2001, and work continues to identify all the genes in the

    human genome.

    The project involved scientists from 18 different countries and showed how scientists collaborate.

    The scientists broke up the chromosomes of cells to get their DNA, and placed them in sequencers

    to display the most likely order of this base.

    Powerful computer were used to help match the base sequences of genes with the proteins for

    which are the code.

    Knowing the human DNA profile raises some ethical questions, but many consider this knowledge to be of

    benefit:

    Improved genetic testing

    Location of genes that might be linked to increased chances of inheriting a disease

    New gene therapy treatments

    New knowledge of how humans have evolved

    Personalised medicines

    1.3Genetic engineering

    Differences between Genetic engineering and cloning

    Cloning Genetic engineering

    Produces exact copies Produces a unique set of genes

    Genes copied within the same species Genes can be swapped across species

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    How it works

    A strand of DNA from the cell carrying a gene which enable cells to produce useful proteins is cut

    out using a restriction enzymein order to isolate the gene.

    Bacteria contains circular DNA called plasmid DNA which is also cut out using a restriction enzyme

    The gene is inserted into the plasmid using ligase enzyme.

    The recombinantplasmid is then placed back into the bacterial cell

    The bacteria multiplies and produces millions of identical clones, with the DNA coding for required

    protein. The bacteria grows in fermenters. The end product is removed from the fermenter.

    Uses

    GM insulin

    Natural insulin can be taken from the pancreas of a pig or cow. It is used to treat diabetes but is

    limited in supply and doesn't suit all people.

    Modern practice is to create insulin synthetically using genetically modified bacteria.

    The gene for insulin secretion is cut from a length of human DNA and inserted into the DNA of a

    bacterium.

    Advantages of GM insulin

    Cheap to produce and available in large quantities

    It is (human insulin), so the users do not experience any allergic reactions or tolerances.

    Does not use animal products so it is not a problem for religious groups or vegetarians.

    Wild rice

    Scientists have added a gene to wild rice that makes it produce beta carotene. This changes the

    colour of the wild rice to a golden colour.

    Beta carotene is needed by humans in order to make Vitamin A.

    Advantages Disadvantages

    Can be used in areas where Vitamin A

    deficiency is common and so can helpprevent blindness.

    Not meant to be the only solution to VitaminA deficiency

    Fears that it will crossbreed with andcontaminate wild rice Worries that GM organisms might harmpeople Beta carotene levels aren't high enough tomake a difference

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    GM organisms can be expensive

    Herbicide resistant crops

    Scientists have added genes to crop plants that make them resistant to herbicides.

    This reduces the quantity of herbicide that needs to be used.

    Potential disadvantages of this genetic modification include:

    The potential development of herbicide-resistant weeds

    Loss of biodiversity as fewer weed species survive as a food and shelter source for animals

    GM crops

    Grow in places with low rainfall

    Produce their own chemicals to kill insects to damage them

    Resist diseases and herbicides

    Worries are:

    Not natural

    Eating GM food may affect our health

    Crops may harm wildlife

    1.4Mitosis and meiosis

    There are two types of cell division.

    Mitosis is used for growth and repair and produces diploid cells identical to each other and the

    parent cell.

    Meiosis is used for sexual reproduction and produces haploid cells different to each other and theparent cell.

    Mitosis

    Mitosis is the type of cell division used for growth, repair and asexual reproduction.

    Mitosis occurs wherever new cells are needed. It produces two daughter cells that are identical to

    each other from the parent cell.

    In mitosis each chromosome is copied exactly.

    The new chromosomes are moved to opposite sides of the cell, before the cell divides leaving one

    complete set of 46 chromosomes in each of the two new cells.

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    Meiosis

    Meiosis is a different kind of cell division. It is used to produce male and female gametes.

    A human body cell contains 46 chromosomes arranged in 23 pairs. The gametes are sperm or

    eggs, and only contain half as many chromosomes (23).

    This is why meiosis is sometimes called reduction division.

    Fertilisation

    In humans all reproduction is sexual. It involves joining together haploid gamete cells from each

    parent with half the normal number of chromosomes to make a diploid zygote.

    The cells from each parent that combine to form the zygote are called gametes. In humans, the

    male gamete is called sperm, and the female gamete is called an egg.

    When the gametes join they form a cell called a zygote. Human sperm and eggs contain 23

    chromosomes. Human zygotes contain 46 chromosomes.

    The type of cell division that produces gametes with half the normal chromosome number is called

    meiosis. It is used to produce cells for repair and asexual reproduction

    Gametes contain different genetic information to each other and to the parent cell. Meiosis is

    responsible for causing genetic variation.

    1.5Cloning

    Asexual reproduction

    Plants can make identical copies (clones) of themselves. Many plants have ways of increasing their

    numbers by asexual reproduction

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    New plants are created by repeated cell division:

    A potato plant can produce many tubers, each of which can grow into a new plant.

    Strawberry plants and spider plants produce long stems with tiny plants on the end. These runners

    can produce several new plants from one parent.

    It's fairly easy to artificially produce new plants by taking a cutting, and waiting for the cutting to

    develop new roots and leaves.

    Process of cloning

    The nucleus of a body cell of the animal to be cloned is transferred to anenucleatedegg cell (one

    that has had its original nucleus removed).

    The cell is then stimulated to start dividing to form an embryo.

    This is implanted into the uterusof the surrogate motherwho is a different individual to the parent

    A new individual develops and is genetically identical to the animal which wished to be cloned.

    Ethical issues

    Animal cloning raises ethical issues about how far humans should be allowed to interfere in the

    production of new life.

    Cloning plants is easier than cloning animals. Cloning expensive food crops has been carried out for

    many years, and causes the public fewer ethical and moral concerns than animal cloning.

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    How to clone cows using embryo transplants

    This technique could be used to make many copies of cows that have a high milk yield.

    It would produce a herd of cows much faster than if the original cow was used for breeding in the

    normal way. Sexual reproduction is still involved and the calves are not identical to either parent.

    CloningAdvantages Disadvantages

    All the new plants are geneticallyidenticalthey will all have thedesired characteristics.

    Organisms that are difficult orslow to breed normally can bereproduced quickly. Some plantvarieties do not produce seeds,others have seeds that aredormant for long periods.

    If a clone is susceptible todisease or changes inenvironment, then all the cloneswill be susceptible.

    It will lead to less variation, andless opportunity to create newvarieties in the future.

    Stem cells

    During the development of an embryo most of the cells become specialised. They cannot later

    change to become a different type of cell.

    But embryos contain a special type of cell called stem cells. These can grow into any type of cell

    found in the body. They are not specialised.

    Stem cells are extracted from a 5-7 day old blastocyst.

    Stem cells can divide in culture to form more of the same kindthis is called a stem cell line.

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    Stem cells could be used for:

    Making new brain cells to treat people with Parkinson's disease

    Repairing damaged immune systems

    Making replacement heart valves

    Therapeutic cloning

    If you were to receive medical treatment with cells grown from stem cells, your body's immune

    system would recognise the cells as foreign, and they would be rejected and die.

    But this would not happen if you received cells with the same genes as you.

    This could be done by cloning one of your cells to produce an embryo, then taking stem cells from

    this.

    Here are the steps involved:

    Nucleus taken out of a human egg cell

    Nucleus from a patient's cell put into the egg cell

    Egg cell stimulated to develop into an embryo

    Stem cells taken from the embryo

    Stem cells grown in a container of warm nutrients Stem cells treated to develop into required cell types

    Stem cell research

    For Against

    Research groups such asESCR (Embryonic StemCell Research) fulfils theethical obligation toalleviate human suffering

    Since excess IVFembryos are discardedanyway, wouldnt it bebetter to use it forvaluable research?

    Therapeutic cloningproduces cells in a petridish, not a pregnancy.

    In ESCR, stem cells aretaken from a humanblastocyst, which is thendestroyed. This amountsto murder.

    There is a risk ofcommercial exploitation ofparticipants of ESCR.

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    1.6Protein synthesis

    Peptideschains of 220 amino acidsPolypeptideschains of 2150 amino acids

    Ribonucleic acid (RNA) is a chemical like DNA. However, RNA are single stranded and has U baseinstead of T

    RNA has two roles in protein synthesis:

    Messenger RNA (mRNA)carries the protein-making information from the DNA inside the nucleusof the cell to the ribosomes in the cytoplasm, where the protein is made.

    Transfer RNA (tRNA)carries the amino acids needed to form the protein to the ribosomes

    There are two stages: transcription (which occurs in the nucleus) and translation (which occurs in the

    cytoplasm).

    Transcription1) The strands of DNA separate2) Strands of mRNA form as the bases of RNA nucleotides combine with their complementary bases

    of the single stranded DNA.3) The strands of mRNA separate from their respective strands of complementary strands of DNA.

    They pass from the nucleus through gapsTranslation

    4) Each strand of mRNA binds to a ribosome creating an mRNA-ribosome complex.5) Each type of tRNA molecule binds to its particular type of amino acid dissolved in the cytoplasm,

    depending on the codon it carries.

    6) tRNA/amino acid combinations pass to the mRNA-ribosome complex. The exposed bases of tRNAbind to the complementary bases of mRNA. Chemical bonds form between the amino acids next toeach other.

    7) Once the bonds form, each tRNA separates from its amino acid and the mRNA strand.8) The linked amino acids form a polypeptide.

    1.7 - Enzymes

    Enzymes are soluble protein molecules that can speed up chemical reactions in cells.

    These reactions include respiration, photosynthesis and making new proteins. For this reasonenzymes are sometimes called biological catalysts.

    Enzymes speed up (catalyse) chemical reactions occurring inside and outside of living cells. This includes:

    DNA replication(DNA polymerasebreaks down the double helix before DNA replication, alsoinvolved in checking the copying of the DNA strand.)

    Protein synthesis (Speeds up the rate of the joining together of individual amino acids)

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    Digestion (Different enzymes break down large food molecules in the mouth, stomach and smallintestine to smaller ones so they can be absorbed into the cells).

    Each enzyme will only speed up one reaction as the shape of the enzyme molecule needs to matchthe shape of the molecule it reacts with (the substrate molecule).

    The part of the enzyme molecule that matches the substrate is called the active site.

    Enzymes and temperature

    At low temperatures, enzyme reactions are slow.

    They speed up as the temperature rises until an optimum temperature is reached. After this point

    the reaction will slow down and eventually stop.

    Enzymes and pH

    Most enzymes work fastest in neutral conditions. Making the solution more acidic or alkaline will

    slow the reaction down. At extremes of pH the reaction will stop altogether.

    Some enzymes, such as those used in digestion, are adapted to work faster in unusual pH

    conditions and may have an optimum pH of 2 (very acidic) if they act in the stomach.

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    Enzymes and substrate concentration

    Enzymes will work best if there is plenty of substrate available. As the concentration of the substrate

    increases, so does the enzyme activity.

    However, the enzyme activity does not increase without end. This is because the enzyme can't work

    any faster even though there is plenty of substrate available.

    The lock and key mechanism

    Enzymes work best at their optimum temperature. This is why homeostasis is important - to keep

    our body temperature at a constant 37C.

    As the temperature increases, so does the rate of chemical reaction. This is because heat energy

    causes more collisions, with more energy, between the enzyme molecules and other molecules.

    However, if the temperature gets too high, the enzyme is denaturedand stops working.

    Enzymes are specific. Only molecules with the correct shape can fit into the enzyme. Just like only

    one key can open a lock, only one type of enzyme can speed up a specific reaction. This is called

    the lock and key model.

    Denaturing the enzymes

    The important part of an enzyme is called the active site. This is where specific molecules bind to

    the enzyme and the reaction occurs.

    Anything that changes the shape of the active site stops the enzyme from working. The shape of the active site is affected by pH. This is why enzymes will only work at a specific pH,

    as well as a specific temperature. Change the pH and the enzyme stops working.

    Increasing the temperature to 60C will cause a permanent change to the shape of the active site.

    This is why enzymes stop working when they are heated. We say they have become denatured.

    Topic 2Organisms and energy

    2.1Respiration

    Respirationseries of chemical reactions that oxidise glucose, releasing energy. In the presence of

    oxygen, glucose is oxidised to carbon dioxide and water.

    Aerobic respiration

    Respiration is not the same thing as breathing. That is more properly called ventilation.

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    In aerobic respiration, oxygen is used to release energy from molecules such as glucose.

    Aerobic respiration needs oxygen to work. Most of the chemical reactions involved in the process

    happen in tiny objects inside the cell cytoplasm, called mitochondria.

    This is the equation for aerobic respiration:

    glucose + oxygen carbon dioxide + water (+ energy)

    The energy released by respiration is used to make large molecules from smaller ones. (In plants,

    for example, sugars, nitrates and other nutrients are converted into amino acids. Amino acids canthen join together to make proteins.)

    The energy is used to:

    To allow muscles to contract in animals

    To maintain a constant body temperature in birds and mammals

    The circulatory system

    Blood carries oxygen and nutrients to the body's cells, and waste products away from them.

    The diagram outlines the circulatory system. Oxygenated blood is shown in red, and deoxygenated blood in

    blue.

    A process called diffusion takes place in the capillaries.

    Diffusionis where particles of a high concentration move to an area of low concentration.

    Glucose and oxygen diffuse into the cells from the capillaries. Carbon dioxide diffuses out of thecells into the blood in the capillaries.

    Anaerobic respiration

    When exercising very hard, the heart cannot get enough oxygen to the muscles. Anaerobic

    respiration does not need oxygen. It releases energy from glucose but the amount is much lower.

    It happens when there is not enough oxygen for aerobic respiration.

    Here is the word equation:

    glucose lactic acid (+ energy)

    Much less energy is released by anaerobic respiration than by aerobic respiration. The lactic acidthat forms causes muscle fatigue and pain.

    Effect of exercise on breathing

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    During exercise, the muscle cells respire more than they do at rest. This means:

    Oxygen and glucose must be delivered to them more quickly

    Waste carbon dioxide must be removed more quickly

    This is achieved by increasing the breathing rate and heart rate. The increase in heart rate can be detected

    by measuring the pulse rate.

    The stroke volume also increasesthis is the volume of blood pumped each beat

    The total cardiac output can be calculated using the equation:

    Cardiac output = stroke volume x heart rate

    During hard exercise, the oxygen supply may not be enough for the needs of the muscle cells.

    When this happens, anaerobic respiration takes place, as well as aerobic respiration.

    Fit people are able to carry out physical activities more effectively than unfit people. Their pulse rate

    is likely to return to normal more quickly after exercise.

    The after effect of exercise

    During hard exercise when anaerobic respiration occurs with aerobic respiration, an oxygen debt

    builds up. This is now known as Excess Post-exercise Oxygen Debt or EPOC.

    This is because glucose is not broken down completely to form carbon dioxide and water. Some of

    it is broken down to form lactic acid.

    Panting after exercise provides oxygen to break down lactic acid.

    The increased heart rate also allows lactic acid to be carried away by the blood to the liver, where it

    is broken down.

    2.2Photosynthesis

    A process in which plants absorb sunlight, carbon dioxide and water to produce glucose and oxygen.

    Structure of a leaf

    The equation for photosynthesis is:

    Carbon dioxide and water glucose and oxygen

    Adaption Purpose

    Large surface area To absorb more light

    Thin Short distance for carbon dioxide to diffuse into leafcells

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    Chlorophyll Absorbs sunlight to transfer energy into chemicals

    Network of veins To support the leaf and transport water andcarbohydrates

    Inside of a leaf

    Adaption Purpose

    Epidermis is thin and transparent To allow more light to reach the palisade cells

    Thin cuticle made of wax To protect the leaf without blocking out light

    Palisade cell layer at top of leaf To absorb more light

    Spongy layer Air spaces allow carbon dioxide to diffuse throughthe leaf, and increase the surface area

    Factors affecting photosynthesis

    Without enough light, a plant cannot photosynthesise very quickly, even if there is plenty of water

    and carbon dioxide. Increasing the light intensity will boost the speed of photosynthesis.

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    Sometimes photosynthesis is limited by the concentration of carbon dioxide in the air. Even if there

    is plenty of light, a plant cannot photosynthesise if there is insufficient carbon dioxide.

    If it gets too cold, the rate of photosynthesis will decrease. Plants cannot photosynthesise if it gets

    too hot.

    Farmers can use their knowledge of these limiting factors to increase crop growth in greenhouses.

    They may use artificial light so that photosynthesis can continue beyond daylight hours, or in a

    higher-than-normal light intensity.

    The use of paraffin lampsinside a greenhouse increases the rate of photosynthesis because the

    burning paraffin produces carbon dioxide, and heat too.

    2.3Transpiration

    Transpiration explains how water moves up the plant against gravity in tubes made of dead xylem

    cells without the use of a pump.

    Transpirationthe movement of water and mineral salts from roots to leaves in plants.

    Water on the surface of spongy and palisade cells (inside the leaf) evaporates and then diffuses out

    of the leaf.

    More water is drawn out of the xylem cells inside the leaf to replace what's lost.

    As the xylem cells make a continuous tube from the leaf, down the stem to the roots, this acts like a

    drinking straw, producing a flow of water and dissolved minerals from roots to leaves.

    Factors that speed up transpiration will also increase the rate of water uptake from the soil. When

    water is scarce, or the roots are damaged, it increases a plant's chance of survival if the

    transpiration rate can be slowed down.

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    Plants can do this themselves by wilting, or it can be done artificially, like removing some of the

    leaves from cuttings before they have chance to grow new roots.

    Factors that affect transpiration rate

    Factor Description Explanation

    Light In bright light transpiration

    increases

    The stomata (openings in the leaf)

    open wider to allow more carbon

    dioxide into the leaf for

    photosynthesis

    Temperature Transpiration is faster in higher

    temperatures

    Evaporation and diffusion are

    faster at higher temperatures

    Wind Transpiration is faster in windy

    conditions

    Water vapour is removed quickly

    by air movement, speeding up

    diffusion of more water vapour out

    of the leaf

    Humidity Transpiration is slower in humid

    conditions

    Diffusion of water vapour out of

    the leaf slows down if the leaf isalready surrounded by moist air

    2.4Plant transport

    They use two different systems for transport:

    Xylem moves water and solutes from the roots to the leaves

    Phloem moves food substances from leaves to the rest of the plant.

    Both of these systems are rows of cells that make continuous tubes running the full length of the plant.

    Xylem

    Xylem cells have extra reinforcement in their cell walls, and this helps to support the weight of the

    plant.

    For this reason, the transport systems are arranged differently in root and stem:

    In the root it has to resist forces that could pull the plant out of the ground (resist stretching forces)

    In the stem it has to resist compression and bending forces caused by the weight of the plant andthe wind.

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    Comparison between xylem and phloem

    Tissue Process What is moved Structure

    Xylem Transpiration Moves water and

    minerals from roots to

    leaves

    Columns of hollow,

    dead reinforced cells

    Phloem Translocation Moves food substances

    from leaves to rest of

    plant

    Columns of living cells

    2.5Root hair cells and osmosis

    Plants absorb water from the soil by osmosis. Root hair cells are adapted for this by having a large

    surface area to speed up osmosis.

    The absorbed water is transported through the roots to the rest of the plant where it is used for different

    purposes:

    It is a reactant used in photosynthesis

    It supports leaves and shoots by keeping the cells rigid

    It cools the leaves by evaporation

    It transports dissolved minerals around the plant

    Leaves

    Leaves are adapted for photosynthesis by having a large surface area, and contain openings, called

    stomata to allow carbon dioxide into the leaf.

    Although these design features are good for photosynthesis, they can result in the leaf losing a lot of

    water.

    The cells inside the leaf have water on their surface. Some of this water evaporates, and the water

    vapour can then escape from inside the leaf by diffusion

    To reduce loss the leaf is coated in a wax cuticle to stop the water vapour escaping through the

    epidermis.

    Leaves usually have fewer stomata on their top surface to reduce this water loss.

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    Reducing water loss

    Stomata

    Plants growing in drier conditions tend to have small numbers of tiny stomata and only on theirlower leaf surface, to save water loss.

    Most plants regulate the size of stomata with guard cells.

    In low light the guard cells lose water and become flaccid, causing the stomata to close. They would

    normally only close in the dark when no carbon dioxide is needed for photosynthesis.

    Turgidity

    Most plant cells are turgid at all times. This supports the weight of the plant, which is especially

    important where there is no woody tissue, such as leaves, shoot and root tip.

    If the plant loses water faster than it can be absorbed the cells lose turgor pressureand begin to

    wilt.

    Osmosis

    Osmosisis the movement of water molecules from an area of high concentration of water to an

    area of lower concentration of water through a partially permeable membrane.

    An example is the flooding of plants by sea water. Sea water contains many chemicals in solution,

    such as salt. Osmosis will move water across the plant cell membrane, from the weaker to the

    stronger solution.

    2.6Fieldwork techniques

    Sampling

    Ecologists will want to know certain information about the species present:

    Where an organism is found (distribution)

    The number of that organism present (population)

    Whenever a scientist studies an area it is usually not possible to look at the entire environment indetail. Therefore, the scientist samples a section or small portion.

    Sampling several small sections is representative of the whole area. The sampling technique useddepends on the habitat and type of organisms present.

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    Pooters

    A pooter is used to catch small insects.

    The user breathes in through the mouthpiece which has a piece of net covering the end.

    The insects are sucked into the holding chamber via the inlet tube.

    Sweep nets

    Sweep nets are used in areas of long grass to catch organisms. They can also be used in ponds.

    Pitfall traps

    Pitfall traps are used to catch small, crawling insects. They can be set up and left overnight to catch nocturnal species.

    All organisms caught should be released unharmed.

    Quadrats

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    They are used to sample all the plant species in a particular area.

    Environmental factors

    Device Description

    Light intensity can be measured using a light

    intensity meter.

    pH is measured with a pH probe

    Temperature is measured with a temperature

    probe

    Sometimes a single probe can be used to read

    both pH and temperature

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    Topic 3Common systems

    3.1Fossils and evolution

    Fossilsthe preserved remains of organisms that lived a long time ago

    Fossils of the simplest organisms are found in the oldest rocks, and fossils of more complex

    organisms in the newest rocks. This supports the theory of evolution, which states that simple life

    forms gradually evolved into more complex ones.

    Certain environmental conditions drastically slow down the decaying process, helping to preserve the

    tissues. Examples of this are:

    Insufficient oxygen, e.g when an organism becomes trapped in amber

    Low temperatures, e.g when an organism becomes frozen in a glacier

    High soil acidity, e.g when an organism falls into a peat bog

    If these conditions are not present, the remains will not be fossilised.

    This makes tracing the story of evolution of any one species challenging.

    In most cases there are big gaps in fossil records. Problems also arise as soft tissues decayresulting in scientists having to estimate what the organism was like. Finally, there are also lots of

    fossils that we haven't yet found.

    The pentadactyl limb

    Many vertebrates have a very similar bone structure despite their limbs looking very different on the

    outside. This structure is known as the pentadactyl limbfive fingered.

    This suggests that many vertebrates descended from the same common ancestor.

    The evolution of the horse

    Time period Height

    Modern horse

    1 million years ago 1.6 metres

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    Time period Height

    Pliohippus

    10 million years ago 1.0 metres

    Merychippus

    30 million years ago 1.0 metres

    Mesohippus

    40 million years ago 0.6 metres

    Eohippus

    60 million years ago 0.4 metres

    3.2Growth

    Humans are made of millions of cells. This has a number of benefits:

    Cells can be specialised to do particular tasks.

    Groups of cells can function as organs, making a more efficient but complex organism.

    The organism can grow very large

    Growth- Growth can be defined as an increase in size, length and mass.

    Growth in animals and plants

    Feature Plant Animal

    Where growth occurs Mainly at shoot and root tips and in

    special growth zones like buds

    New cells can be made by most

    tissues

    How growth occurs Size increase often caused by

    increasing the size (elongation) of

    cells by absorbing water into the

    vacuole

    Size increase is brought about by

    increasing the number of cells

    Cell specialisation Most plant cells can differentiate

    into different cell types

    Only stem cells can differentiate into

    different cell types. Other animal cell

    functions remain fixed

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    White blood cells

    Have a nucleus

    Lymphocytesmake antibodiesbind to microorganisms that cause disease and destroy them

    Phagocytessurround and destroys foreign cells that enter the body

    Contain a cytoplasmallows them to access tissues so they can protect the body by attacking and

    destroying bacteria and viruses.

    Plasma

    Straw-coloured liquid

    Transports dissolved substances around the body, such as hormones, nutrients and waste

    substances.

    Platelets

    Fragments of cells with no nucleus. They also contain protein

    When platelets are damaged by a cut, they release a substance that starts a chain of chemical

    reactions in the blood.

    Fibrogenproduced soon turns into insoluble fibrin as the scab formed dries out.

    3.4The heart

    Cells, tissues and organs

    A living tissue is made from a group of cells with a similar structure and function, which all work

    together to do a particular job.

    An organis made from a group of different tissues, which all work together to do a particular job.

    An organ systemis made from a group of different organs, which all work together to do a

    particular job.

    Heart

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    1. A vena cava brings deoxygenated bloodfrom the body into the right atrium.

    2. When the atrium is full, muscles in the wall contract and force blood through the values into the

    right ventricle. The values have tissue to prevent backflow.

    3. When the ventricle is full, the ventricle wall contracts forcing blood through the pulmonary artery

    where it picks up oxygen from the lungs.

    4. The oxygenated bloodreturns enter the left atrium through the pulmonary vein.5. When the atrium is full, the muscle wall contracts and forces blood through the left ventricle.6. When ventricle wall contracts, this forces the blood out of the aortato respiring cells in the body.

    The left ventricle exerts more pressure than the right ventricle, and so it has a thicker moremuscular wall.

    The atria (plural of atrium) exert less pressure than the ventricles so they have a thinner muscularwall.

    3.5The circulatory system

    Blood vesselsthat tube shaped organs that carry blood. There are three types: arteries, veinsand capillaries.

    Arteries

    Carry blood away from the heart.

    The blood in arteries has to be under pressure so that it can reach all parts of the body. Therefore,

    arteries have strong, thick walls.

    Capillaries

    Allow substances to diffuse into and out of the blood, into the cells in tissues.

    To help this process, they have very think walls

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    Veins

    Have wide passages inside them to carry blood to the heart.

    They have to be wide because the blood flows relatively slowly under low pressure.

    3.6The digestive system

    The digestive system is made out of the alimentary canala muscular tube running through thebody from the mouth to the mouth of the anus and several other organs that make chemicals fordigestion (including enzymes)

    Process

    1) Mouth

    Food is broken into smaller pieces during chewing. This increases the surface area for digestiveenzymes to work on.

    The bolus (formed by the tongue) is lubricated with saliva in order to make it easier to swallow.

    Salivary amylase breaks down the starch in the food

    2) Oesophagus

    A muscular tube between the mouth and the stomach.

    Peristalsis occursmuscles contract in waves to push the food towards the stomach

    3) Stomach

    A muscular tube that makes hydrochloric acid and some enzymes (such as proteaseto digest

    proteins) Churns the food up with these juices by peristalsis to make a thick paste.

    4) Small intestine

    A long, coiled muscular tube in while large insoluble food molecules are turned to smaller solubleones.

    Contains digestive enzymes made by the pancreas and makes its own digestive enzymes as well.

    Molecules of digestive food are absorbed into blood using villi which contain capillaries.Food ismoved on using peristalsis.

    Pancreasthis organ makes digestive enzymes and releases them to the first part of the small intestine.

    5) Large intestine

    Undigested food passes into this wide, thin-walled tube.

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    Water is diffused back into the blood leaving faeces behind.

    6) Anus

    Undigested food is passed out of the body

    Liver

    Digestive food is absorbed by the small intestine and dissolves in the blood plasma. Once in theblood, it is taken to the live to be processed. Some of the molecules are broken down even more.Some are built into large molecules again.

    The liver makes bilewhich helps in digestion of fats.

    Gall bladder

    A small organ that stores bile made by the liver and releases it to the small intestine when needed.

    3.7Breaking down food

    Digesting carbohydrates

    Digestive enzymes that break down carbohydrates are called carbohydrases.

    Amylase is a carbohydrase that break down starch into sugarswhich can then be absorbed bythe small intestines or broken down into glucose by other carbohydrases.

    An amylase is present in saliva. Another amylase is present in the pancreas and released into thesmall intestine.

    Digesting proteins

    Proteases are enzymes that digestproteinsbreaking them into shorter chains then amino acids.

    Pepsinis a protease made in the stomach. It works well in acidic conditions. The acid produced inthe stomach is pH 2-3. This is the optimum pHfor pepsin to break down protein as fast as possible.

    However, the contents in the small intestine is alkaline so the proteases released into the smallintestine work best at pH 8.

    Digesting fats

    Lipases digest fatsand break down the fat molecules into fatty acidsand glycerol.

    Fat and water do not mix so fats and oils form globules in the watery digestive juices. Bile is

    secreted into the small intestine, where it emulsifiesfats. This is important, because it provides alarger surface area in which the lipases can work.

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    3.8Villi

    The inside wall of the small intestine is thin, with a large surface area. This allows absorption tohappen quickly and efficiently.

    To get a big surface area, the inside wall of the small intestine is lined with tiny villi. These stick outand give a big surface area.

    They also contain blood capillaries to carry away the absorbed food molecules.

    The villi have a rich blood supply. The blood supply has a lower concentration of food moleculesand this steep concentration gradientbetween the small intestine and the blood means diffusionoccurs quickly.

    Thin wallone cell thick.

    3.9Probiotics and prebiotics

    Probiotics

    Contain live, beneficialbacteria which are usually Lactobacillusand Bifidobacteriathat producelactic acid in the gut.

    Manufacturers of probiotic foods (such as yogurt) claim that these make you healthier by improvingyour digestive system helping your body protect itself against diseases and reducing allergies.

    However, in 2010, scientists at the European Food Safety Agency looked at the evidence for 180health claims for probiotics. 10 were rejected completely whilst there was not enough evidence tosupport the other 170 claims.

    Prebiotics

    Substances that the body cannot digest. They act as food for the beneficialbacteria in the gut andencourage their growth.

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    Found in tomatoes, bananas, onions which all contain oligosaccharides, a common form ofprebiotic. Can be also found in dairy products or sold in capsules.

    Plant stanol esters

    Oily substances found in plants. Scientists have discovered that these can stop the small intestinefrom absorbing cholesterol, lowering the levels of cholesterol in the blood. High cholesterol leads toan increased risk of heart disease.

    Used in many food such as spreads, drinks, etc. There is clear evidence that this has an effect.