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Screening Dr. N. Birkett, School of Epidemiology, Public Health and Preventive Medicine, University of Ottawa SUMMER COURSE: INTRODUCTION TO EPIDEMIOLOGY AUGUST 27, 1330-1500

Causal reasoning; confounding (introduction)

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Summer Course: Introduction to Epidemiology. August 28, 1330-1500. Causal reasoning; confounding (introduction). Dr. N. Birkett, Department of Epidemiology & Community Medicine, University of Ottawa. Session Overview. Review historical approaches to establishing causation - PowerPoint PPT Presentation

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Page 1: Causal reasoning; confounding (introduction)

Screening

Dr. N. Birkett,School of Epidemiology, Public Health and Preventive Medicine,

University of Ottawa

SUMMER COURSE:INTRODUCTION TO

EPIDEMIOLOGY

AUGUST 27, 1330-1500

Page 2: Causal reasoning; confounding (introduction)

Session Overview• Review key features of tests for detecting disease.• Screening programmes

• Overview• Criteria for utility

Page 3: Causal reasoning; confounding (introduction)

Scenario (1)A 54 year old female teacher visited her family physician for an annual checkup. She reported no illnesses in the previous year, felt well and had no complaints. Hot flashes related to menopause had resolved. A detailed physical examination, including breast palpation, was unremarkable. A screening mammogram was recommended as per current guidelines.

Page 4: Causal reasoning; confounding (introduction)

Scenario (2)The mammogram results were ‘not normal’ and a follow-up breast biopsy was recommended. The surgeon confirmed the negative clinical exam. Based on the abnormal mammogram, a fine-needle aspiration biopsy of the abnormal breast under radiological guidance was recommended. Pathological review of the biopsy revealed the presence of a malignant breast tumor. Further surgery was scheduled to pursue this abnormal finding.

Page 5: Causal reasoning; confounding (introduction)
Page 6: Causal reasoning; confounding (introduction)

Test Properties (1)• Most common situation (for teaching at least) assumes:

• Dichotomous outcome (ill/not ill)• Dichotomous test results (positive/negative)

• Represented as a 2x2 table (yet another variant!).• Advanced methods can consider tests with multiple

outcomes• advanced;• moderate; • minimal; • no disease

Page 7: Causal reasoning; confounding (introduction)

Diseased Not diseased

Test +ve 90 5 95

Test -ve 10 95 105

100 100 200

Test Properties (2)

True Positives

False Negatives

False Positives

True Negatives

Page 8: Causal reasoning; confounding (introduction)

Diseased Not diseased

Test +ve 90 5 95

Test -ve 10 95 105

100 100 200

Test Properties (3)

Sensitivity=0.90 Specificity=0.95

Page 9: Causal reasoning; confounding (introduction)

Diseased Not diseased

Test +ve a b a+b

Test -ve c d c+d

a+c b+d a+b+c+d

Test Properties (4)

Sensitivity Specificity

Page 10: Causal reasoning; confounding (introduction)

Test Properties (5)Sensitivity = Pr(test positive in a person with disease)Specificity = Pr(test negative in a person without

disease)• Range: 0 to 1

• > 0.9: Excellent• 0.8-0.9: Not bad• 0.7-0.8: So-so• < 0.7: Poor

Page 11: Causal reasoning; confounding (introduction)

Test Properties (6)• Generally, high sensitivity associated with low specificity

and vice-versa (more later).• Do you want a test with high sensitivity or specificity?

• Depends on cost of ‘false positive’ and ‘false negative’ cases.• PKU – one false negative is a disaster.• Ottawa Ankle Rules

Page 12: Causal reasoning; confounding (introduction)

Test Properties (7)• Patients don’t ask:

• if I’ve got the disease how likely is it that the test will be positive?• They ask:

• My test is positive? Does that mean I have the disease?

Predictive values.

Page 13: Causal reasoning; confounding (introduction)

Diseased Not diseased

Test +ve 90 5 95

Test -ve 10 95 105

100 100 200

Test Properties (8)

PPV=0.95

NPV=0.90

Page 14: Causal reasoning; confounding (introduction)

Diseased Not diseased

Test +ve a b a+b

Test -ve c d c+d

a+c b+d a+b+c+d

Test Properties (9)

PPV

NPV

Page 15: Causal reasoning; confounding (introduction)

Test Properties (10)PPV = Pr(subject has disease given that their test

was positive)NPV = Pr(subject doesn’t have disease given that

their test was negative)• Range: 0 to 1

• > 0.9: Excellent• 0.8-0.9: Not bad• 0.7-0.8: So-so• < 0.7: Poor

Page 16: Causal reasoning; confounding (introduction)

Test Properties (11)Effect of disease prevalence• Common diseases are easier to find than rare diseases.• Sensitivity & specificity are not affected by prevalence.• PPV is affected by the prevalence of the disease in the

target population.

Let’s do an example. Assume we have:• sens = 0.85; spec = 0.9

Page 17: Causal reasoning; confounding (introduction)

Diseased Not diseased

Test +ve 425 50 475

Test -ve 75 450 525

500 500 1,000

Test Properties (12)

PPV=0.89

Tertiary care: research study. Prevalence = 0.5

Page 18: Causal reasoning; confounding (introduction)

Diseased Not diseased

Test +ve

Test -ve

Test Properties (13)

PPV=0.08

Primary care: Prevalence = 0.01Diseased Not diseased

Test +ve

Test -ve

10,000

Diseased Not diseased

Test +ve

Test -ve

0.01*10,000 10,000

Diseased Not diseased

Test +ve

Test -ve

100 9,900 10,000

Diseased Not diseased

Test +ve 0.85*100

Test -ve

100 9,900 10,000

Diseased Not diseased

Test +ve 85

Test -ve 15

100 9,900 10,000

Diseased Not diseased

Test +ve 85

Test -ve 15 0.90*9,900

100 9,900 10,000

Diseased Not diseased

Test +ve 85 990

Test -ve 15 8,910

100 9,900 10,000

Diseased Not diseased

Test +ve 85 990 1,075

Test -ve 15 8,910 8,925

100 9,900 10,000

Page 19: Causal reasoning; confounding (introduction)

Test Properties (14)• Most tests give continuous readings

• Serum hemoglobin• PSA• X-rays

• How to determine ‘cut-point’ for normal vs. diseased (negative vs. positive)?

• ↑ sensitivity ↓specificity• Receiver Operating Characteristic (ROC) curves

Page 20: Causal reasoning; confounding (introduction)
Page 21: Causal reasoning; confounding (introduction)

False -ve False +ve

PositiveNegative

Page 22: Causal reasoning; confounding (introduction)

False -ve False +ve

PositiveNegative

Page 23: Causal reasoning; confounding (introduction)
Page 24: Causal reasoning; confounding (introduction)

AUCArea Under Curve

Page 25: Causal reasoning; confounding (introduction)
Page 26: Causal reasoning; confounding (introduction)

Screening (1)• Screening

• The presumptive identification of an unrecognized disease or defect by the application of tests, examinations or other procedures

• Can be applied to an unselected population or to a high risk group.

• Examples• Pap smears (cervical cancer)• Mammography (breast cancer)• Early childhood development• PKU

Page 27: Causal reasoning; confounding (introduction)

Screening (2)• Levels of prevention:

• Primary prevention• Secondary prevention• Tertiary prevention

• Boundaries between levels are fuzzy• Interventions can impact on multiple outcomes or stages

of disease progression• Antihypertensive drugs

• secondary prevention for ‘high blood pressure’• primary prevention for ‘stroke’

Page 28: Causal reasoning; confounding (introduction)

Screening (3)

Page 29: Causal reasoning; confounding (introduction)

Screening (4)DPCP§

§ Detectable Pre-Clinical Phase

Page 30: Causal reasoning; confounding (introduction)

Screening (5)

Page 31: Causal reasoning; confounding (introduction)

Screening (6)Criteria to determine if a screening programme should be implemented• Disease Factors

• Severity• Presence of a lengthy DPCP• Evidence that earlier treatment improves prognosis

Page 32: Causal reasoning; confounding (introduction)

Screening (6)• Test Factors

• Valid - sensitive and specific with respect to DPCP• Reliable and reproducible (omitted from most lists, but shouldn’t

be)• Acceptable - cf. sigmoidoscopy• Easy• Cheap• Safe

Page 33: Causal reasoning; confounding (introduction)

Screening (7)• Test Factors (cont.)

• Test must reach high-risk groups - cf Pap smears• Sequential vs. parallel tests

• Sequential higher specificity• Parallel higher sensitivity

• System Factors• Follow-up provided and available to all• Treatment resources adequate

Page 34: Causal reasoning; confounding (introduction)

Screening (8)• Biases in interpreting evaluations of screening

programmes.• Lead-time Bias

• Detecting disease early gives more years of ‘illness' but doesn’t prolong life

• Length Bias• Slowly progressive cases are more likely to be detected than

rapidly progressive cases

Page 35: Causal reasoning; confounding (introduction)

Screening (9)

Page 36: Causal reasoning; confounding (introduction)

Screening (10)

Page 37: Causal reasoning; confounding (introduction)

Screening (11)

Page 38: Causal reasoning; confounding (introduction)

Screening (12)

Screened Detected

Slow: 5/5

Fast: 2/5

Better survival than non-screened subjects even if screening is useless

Page 39: Causal reasoning; confounding (introduction)

Summary• Diagnostic tests can be evaluated by considering their

error rates• sensitivity & specificity are the key parameters used

• Screening tests have similar properties• Screening should not be used unless early detection of

diseases changes natural history• Screening tests generally need high sensitivity