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CELLULAR RESPIRATIONHARVESTING CHEMICAL
ENERGY
Four Features of Four Features of EnzymesEnzymes
3) The same enzyme sometimes works 3) The same enzyme sometimes works
for both the forward and reverse for both the forward and reverse reactions, but not alwaysreactions, but not always
4) Each type of enzyme recognizes and 4) Each type of enzyme recognizes and binds to only certain substratesbinds to only certain substrates
Activation EnergyActivation Energy
For a reaction to For a reaction to occur, an energy occur, an energy barrier must be barrier must be surmountedsurmounted
Enzymes make Enzymes make the energy the energy barrier smallerbarrier smaller
activation energywithout enzyme
activation energywith enzyme
energyreleased
by thereaction
products
starting substance
Induced-Fit ModelInduced-Fit Modeltwo
substrate molecules
active sight
substratescontactingactive siteof enzyme
TRANSITIONSTATE(tightestbinding butleast stable)
endproduct
enzymeunchangedby thereaction
Substrate molecules Substrate molecules are brought togetherare brought together
Substrates are oriented Substrates are oriented in ways that favor in ways that favor reactionreaction
Active sites may Active sites may promote acid-base promote acid-base reactionsreactions
Active sites may shut Active sites may shut out waterout water
Factors Influencing Factors Influencing Enzyme ActivityEnzyme Activity
Temperature Temperature
pHpH
Salt concentrationSalt concentration
Allosteric regulatorsAllosteric regulators
Coenzymes and cofactorsCoenzymes and cofactors
Allosteric ActivationAllosteric Activation
allosteric activator
vacantallosteric binding site
active site altered, can bind substrate
active site cannot bind substrate
enzyme active site
Allosteric InhibitionAllosteric Inhibition
allosteric inhibitor
allosteric binding site vacant; active site can bind substrate
active site altered, can’t bind substrate
Feedback InhibitionFeedback Inhibition
enzyme 2 enzyme 3 enzyme 4 enzyme 5
enzyme 1
SUBSTRATE
END PRODUCT
(tryptophan)
A cellular change, caused by a specific activity, shuts down the activity that brought it about
Effect of TemperatureEffect of Temperature
Small increase in Small increase in temperature increases temperature increases molecular collisions, molecular collisions, reaction ratesreaction rates
High temperatures High temperatures disrupt bonds and disrupt bonds and destroy the shape of destroy the shape of active site active site
Effect of pHEffect of pH
Enzyme Helpers Enzyme Helpers
CofactorsCofactors CoenzymesCoenzymes
NADNAD++, NADP, NADP++, FAD, FAD Accept electrons and hydrogen ions; transfer Accept electrons and hydrogen ions; transfer
them within cellthem within cell Derived from vitaminsDerived from vitamins
Metal ionsMetal ions Ferrous iron in cytochromesFerrous iron in cytochromes
Producing the Universal Producing the Universal Currency of Life Currency of Life
All energy-releasing pathways All energy-releasing pathways require characteristic starting materialsrequire characteristic starting materials yield predictable products and by-yield predictable products and by-
products products produce ATP produce ATP
Photosynthesizers get energy from Photosynthesizers get energy from the sunthe sun
Animals get energy second- or third-Animals get energy second- or third-hand from plants or other organismshand from plants or other organisms
Regardless, the energy is converted Regardless, the energy is converted to the chemical bond energy of ATPto the chemical bond energy of ATP
ATP Is Universal ATP Is Universal Energy SourceEnergy Source
A review of how ATP drives cellular workA review of how ATP drives cellular work
Making ATPMaking ATP
Plants make ATP during Plants make ATP during
photosynthesisphotosynthesis
Cells of all organisms make ATP by Cells of all organisms make ATP by
breaking down carbohydrates, fats, breaking down carbohydrates, fats,
and proteinand protein
Redox ReactionsRedox Reactions
The loss of electrons is called The loss of electrons is called oxidationoxidation..
The addition of electrons is called The addition of electrons is called reductionreductionAAe-e- + B + B A + B A + Be-e-
Overview of Aerobic Overview of Aerobic RespirationRespiration
CC66HH12120066 + 6O + 6O22 6CO6CO22 + 6H + 6H2200 glucose oxygen glucose oxygen carbon carbon
waterwater
dioxidedioxide
In cellular respiration, glucose and other fuel In cellular respiration, glucose and other fuel molecules are oxidized, releasing energy.molecules are oxidized, releasing energy.
In the summary equation of cellular In the summary equation of cellular respiration:respiration: C C66HH1212OO66 + 6O + 6O22 -> 6CO -> 6CO22 + 6H + 6H22OO
Glucose is oxidized, oxygen is reduced, and Glucose is oxidized, oxygen is reduced, and electrons loose potential energy.electrons loose potential energy.
Cellular respiration does not oxidize glucose Cellular respiration does not oxidize glucose in a single step that transfers all the in a single step that transfers all the hydrogen in the fuel to oxygen at one time.hydrogen in the fuel to oxygen at one time.
Rather, glucose and other fuels are broken Rather, glucose and other fuels are broken down gradually in a series of steps, each down gradually in a series of steps, each catalyzed by a specific enzymecatalyzed by a specific enzyme
Electrons “fall” from organic molecules to Electrons “fall” from organic molecules to oxygen during cellular respirationoxygen during cellular respiration
Copyright © 2002 Pearson Education, Inc., publishing as Benjamin Cummings
An overview of cellular respiration (Layer 1)An overview of cellular respiration (Layer 1)
An overview of cellular respiration (Layer 2)An overview of cellular respiration (Layer 2)
An overview of cellular respiration (Layer 3)An overview of cellular respiration (Layer 3)
Glycolysis Occurs Glycolysis Occurs in Two Stages in Two Stages
Energy-requiring stepsEnergy-requiring steps ATP energy activates glucose and its six-ATP energy activates glucose and its six-
carbon derivativescarbon derivatives
Energy-releasing stepsEnergy-releasing steps The products of the first part are split into The products of the first part are split into
three-carbon pyruvate moleculesthree-carbon pyruvate molecules
ATP and NADH formATP and NADH form
Energy-Requiring Steps Energy-Requiring Steps
ATP
ATP
glucose
glucose-6-phosphate
fructose-6-phosphate
fructose-1,6-bisphosphate
2 ATP investedADP
ADP
P
P
P
Energy-Energy-ReleasinReleasing Stepsg Steps
ATP
PGAL PGAL
ATP
NADH NADH
ATP ATP
2 ATP invested
2 ATP invested
NAD+
Pi
NAD+
Pi
3-phosphoglycerate 3-phosphoglycerate
2-phosphoglycerate 2-phosphoglycerate
PEP PEP
ADP ADP
1,3-bisphosphoglycerate 1,3-bisphosphoglycerateP P P P
P P
P P
P P
pyruvate pyruvate
substrate-level phosphorylation
substrate-level phosphorylation
H2O H2O
ADP ADP
Net Energy Yield Net Energy Yield from Glycolysisfrom Glycolysis
Energy requiring steps:Energy requiring steps: 2 ATP invested2 ATP invested
Energy releasing steps:Energy releasing steps:2 NADH formed 2 NADH formed 4 ATP formed4 ATP formed
Net yield is 2 ATP and 2 NADHNet yield is 2 ATP and 2 NADH
Occur in the Occur in the mitochondriamitochondria
Pyruvate is Pyruvate is broken down to broken down to carbon dioxidecarbon dioxide
More ATP is More ATP is formedformed
More coenzymes More coenzymes are reduced are reduced
Second-Stage Second-Stage
ReactionsReactions
oxaloacetate
malate
citrate
isocitrate
-ketogluterate
fumarate
succinate
CoA
succinyl–CoA
ATP
NADH
NADH
NADH
NADH
FADH2
NAD+
NAD+
FAD NAD+ CoA
CoA
H2O
H2O
H2O
ADP + phosphate group (from GTP)
KREBS CYCLE
PREPARATORY STEPS
pyruvate
NAD+
CoAAcetyl–CoA
coenzyme A (CoA)
(CO2)
Two Parts of Second Two Parts of Second Stage Stage
Preparatory reactionsPreparatory reactions Pyruvate is oxidized into two-carbon Pyruvate is oxidized into two-carbon
acetyl units and carbon dioxideacetyl units and carbon dioxide NADNAD++ is reduced is reduced
Krebs cycleKrebs cycle The acetyl units are oxidized to carbon The acetyl units are oxidized to carbon
dioxidedioxide NADNAD+ + and FAD are reducedand FAD are reduced
pyruvate + coenzyme A + NADpyruvate + coenzyme A + NAD++
acetyl-CoA + NADH + COacetyl-CoA + NADH + CO22
One of the carbons from pyruvate is One of the carbons from pyruvate is released in COreleased in CO22
Two carbons are attached to coenzyme A Two carbons are attached to coenzyme A and continue on to the Krebs cycleand continue on to the Krebs cycle
Preparatory ReactionsPreparatory Reactions
What is Acetyl-CoA?What is Acetyl-CoA?
A two-carbon acetyl group linked to A two-carbon acetyl group linked to coenzyme Acoenzyme A
CHCH33
C=OC=O
Coenzyme ACoenzyme A
Acetyl group
The Krebs CycleThe Krebs Cycle
Overall ProductsOverall Products
Coenzyme ACoenzyme A 2 CO2 CO22
3 NADH3 NADH FADHFADH22
ATPATP
Overall ReactantsOverall Reactants
Acetyl-CoAAcetyl-CoA 3 NAD3 NAD++
FADFAD ADP and PADP and Pii
A summary of the Krebs cycleA summary of the Krebs cycle
Results of the Second Results of the Second StageStage
All of the carbon molecules in All of the carbon molecules in pyruvate end up in carbon dioxidepyruvate end up in carbon dioxide
Coenzymes are reduced (they pick Coenzymes are reduced (they pick up electrons and hydrogen)up electrons and hydrogen)
One molecule of ATP is formed One molecule of ATP is formed Four-carbon oxaloacetate is Four-carbon oxaloacetate is
regeneratedregenerated
Coenzyme Reductions Coenzyme Reductions During First Two StagesDuring First Two Stages
GlycolysisGlycolysis 2 NADH2 NADH PreparatoryPreparatory
reactionsreactions 2 NADH2 NADH Krebs cycleKrebs cycle 2 FADH 2 FADH22 + 6 NADH + 6 NADH
TotalTotal 2 FADH 2 FADH22 + 10 NADH + 10 NADH
Occurs in the mitochondriaOccurs in the mitochondria Coenzymes deliver electrons to Coenzymes deliver electrons to
electron transport systemselectron transport systems Electron transport sets up HElectron transport sets up H++ ion ion
gradientsgradients Flow of HFlow of H++ down gradients powers down gradients powers
ATP formationATP formation
Electron Transport Electron Transport Phosphorylation Phosphorylation
Electron TransportElectron Transport
Electron transport systems are embedded Electron transport systems are embedded
in inner mitochondrial compartmentin inner mitochondrial compartment
NADH and FADHNADH and FADH2 2 give up electrons that give up electrons that
they picked up in earlier stages to electron they picked up in earlier stages to electron
transport systemtransport system Electrons are transported through the Electrons are transported through the
systemsystem The final electron acceptor is oxygenThe final electron acceptor is oxygen
Creating an HCreating an H++ Gradient Gradient
NADH
OUTER COMPARTMENT
INNER COMPARTMENT
Making ATP: Making ATP: Chemiosmotic ModelChemiosmotic Model
ATP
ADP+Pi
INNER COMPARTMENT
Importance of OxygenImportance of Oxygen
Electron transport phosphorylation Electron transport phosphorylation requires the presence of oxygenrequires the presence of oxygen
Oxygen withdraws spent electrons Oxygen withdraws spent electrons from the electron transport system, from the electron transport system, then combines with Hthen combines with H++ to form water to form water
Summary of Energy Summary of Energy HarvestHarvest
(per molecule of glucose)(per molecule of glucose) GlycolysisGlycolysis
2 ATP formed by substrate-level 2 ATP formed by substrate-level phosphorylationphosphorylation
Krebs cycle and preparatory reactionsKrebs cycle and preparatory reactions 2 ATP formed by substrate-level 2 ATP formed by substrate-level
phosphorylationphosphorylation
Electron transport phosphorylationElectron transport phosphorylation 32 ATP formed32 ATP formed
What are the sources of electrons What are the sources of electrons used to generate the 32 ATP in the used to generate the 32 ATP in the final stage?final stage? 4 ATP - generated using electrons 4 ATP - generated using electrons
released during glycolysis and carried released during glycolysis and carried by NADHby NADH
28 ATP - generated using electrons 28 ATP - generated using electrons formed during second-stage reactions formed during second-stage reactions and carried by NADH and FADHand carried by NADH and FADH22
Energy Harvest from Energy Harvest from Coenzyme ReductionsCoenzyme Reductions
Energy Harvest VariesEnergy Harvest Varies
NADH formed in cytoplasm cannot NADH formed in cytoplasm cannot enter mitochondrionenter mitochondrion
It delivers electrons to mitochondrial It delivers electrons to mitochondrial membranemembrane
Membrane proteins shuttle electrons Membrane proteins shuttle electrons to NADto NAD++ or FAD inside mitochondrion or FAD inside mitochondrion
Electrons given to FAD yield less ATP Electrons given to FAD yield less ATP than those given to NADthan those given to NAD++
686 kcal of energy are released 686 kcal of energy are released
7.5 kcal are conserved in each ATP7.5 kcal are conserved in each ATP
When 36 ATP form, 270 kcal (36 X 7.5) are When 36 ATP form, 270 kcal (36 X 7.5) are
captured in ATPcaptured in ATP
Efficiency is 270 / 686 X 100 = 39 percent Efficiency is 270 / 686 X 100 = 39 percent
Most energy is lost as heatMost energy is lost as heat
Efficiency ofEfficiency of Aerobic Respiration Aerobic Respiration
Do not use oxygenDo not use oxygen
Produce less ATP than aerobic Produce less ATP than aerobic
pathwayspathways
Two typesTwo types
Fermentation pathwaysFermentation pathways
Anaerobic electron transportAnaerobic electron transport
Anaerobic Pathways Anaerobic Pathways
Fermentation PathwaysFermentation Pathways
Begin with glycolysisBegin with glycolysis
Do not break glucose down completely to Do not break glucose down completely to
carbon dioxide and watercarbon dioxide and water
Yield only the 2 ATP from glycolysisYield only the 2 ATP from glycolysis
Steps that follow glycolysis serve only to Steps that follow glycolysis serve only to
regenerate NADregenerate NAD++
Lactate FermentationLactate Fermentation
C6H12O6
ATP
ATPNADH
2 lactate
electrons, hydrogen from NADH
2 NAD+
2
2 ADP
2 pyruvate
2
4
energy output
energy input
GLYCOLYSIS
LACTATE FORMATION
2 ATP net
Alcoholic Alcoholic FermentatiFermentati
onon
C6H12O6
ATP
ATPNADH
2 acetaldehyde
electrons, hydrogen from NADH
2 NAD+
2
2 ADP
2 pyruvate
2
4
energy output
energy input
GLYCOLYSIS
ETHANOL FORMATION
2 ATP net
2 ethanol
2 H2O
2 CO2
YeastsYeasts
Single-celled fungiSingle-celled fungi Carry out alcoholic fermentationCarry out alcoholic fermentation Saccharomyces cerevisiaeSaccharomyces cerevisiae
Baker’s yeastBaker’s yeast Carbon dioxide makes bread dough rise Carbon dioxide makes bread dough rise
Saccharomyces ellipsoideusSaccharomyces ellipsoideus Used to make beer and wineUsed to make beer and wine
Anaerobic Electron Anaerobic Electron TransportTransport
Carried out by certain bacteriaCarried out by certain bacteria Electron transport system is in bacterial Electron transport system is in bacterial
plasma membrane plasma membrane Final electron acceptor is compound from Final electron acceptor is compound from
environment (such as nitrate), NOT environment (such as nitrate), NOT oxygenoxygen
ATP yield is almost as good as from ATP yield is almost as good as from aerobic respirationaerobic respiration
Energy from ProteinsEnergy from Proteins
Proteins are broken down to amino acidsProteins are broken down to amino acids
Amino acids are broken apartAmino acids are broken apart
Amino group is removed, ammonia forms, Amino group is removed, ammonia forms,
is converted to urea and excretedis converted to urea and excreted
Carbon backbones can enter the Krebs Carbon backbones can enter the Krebs
cycle or its preparatory reactionscycle or its preparatory reactions
Energy from FatsEnergy from Fats
Most stored fats are triglyceridesMost stored fats are triglycerides
Triglycerides are broken down to glycerol Triglycerides are broken down to glycerol
and fatty acids and fatty acids
Glycerol is converted to PGAL, an Glycerol is converted to PGAL, an
intermediate of glycolysisintermediate of glycolysis
Fatty acids are broken down and converted Fatty acids are broken down and converted
to acetyl-CoA, which enters Krebs cycleto acetyl-CoA, which enters Krebs cycle
When life originated, atmosphere had little When life originated, atmosphere had little
oxygenoxygen
Earliest organisms used anaerobic pathwaysEarliest organisms used anaerobic pathways
Later, noncyclic pathway of photosynthesis Later, noncyclic pathway of photosynthesis
increased atmospheric oxygenincreased atmospheric oxygen
Cells arose that used oxygen as final Cells arose that used oxygen as final
acceptor in electron transportacceptor in electron transport
Evolution of Metabolic Evolution of Metabolic Pathways Pathways