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Chapter 26
Protein Sorting
Chapter Objectives
• Understand the pathways of cotranslational processing of proteins– ER, Golgi, Plasma membrane, Lysosomes
• Understand the pathways of posttranslational processing of proteins– Mitochondria, Peroxisomes, Nucleus
Overview
• Cytoplasmic proteins• Mitochondria,
peroxisome, or nuclear proteins
• Extracellular, lysosomal, ER proteins
Cell Reminder
ER
Golgi
How do proteins know where to go?
• Signal Peptide– Sends
proteins to ER
– No signal, to the cytosol
• Blobel 1999 Nobel Prize
Some polar
Hydrophobic (10-15 aa)
Mature protein
Cleavage site
N
To the ER!
GDPGTP
GDP
Oligosaccharides – N-linked
Goodbye ER, Hello Golgi
• Must physically cross a space.
• COP-coated vesicles– Coat protein
complex• COP-II sends
vesicles to Golgi
Finding a Target
• ARF GTPase activity activated at target– Coat is removed
• Target– Plasma membrane
• Nerve cells
– Other organelles
Oops!! Goodbye Golgi, Hello ER
• COP-I• KDEL sequence in protein
Review
To the Lysosome• Vesicles bud from Golgi to a variety of places– Lysosomes• Termernal glycosylation is mannose 6P• Destructive
Clathrin-coat
• Another way to make vesicles– Dynamin pinches
vesicle• GTP dependent
– Clathrin-coated vesicles become endosomes• Endosomes can
become or fuse with lysosomes.
Integral Membrane Proteins
To the Mitochondria
To the Peroxisome
• Peroxisomes are thought to be artifact organelles– Oxidation reactions• Without producing energy
– Break down lipids
– No synthesis of proteins– PTS1 and PTS2 are signals to import proteins• PTS1 has a c-terminal SKL tripeptide
To the Nucleus
• Transport proteins– Proteins and RNA are leaving the nucleus– Proteins are trying to get into the nucleus– Some proteins are really big
• Nuclear Pore Complex (nucleoporin)– Very big allows diffusion of up to 40,000 Da
proteins– Larger proteins must be accepted by complex
Nuclear Pore Complex
Big Protein Transport
• NLS (nuclear localization signal)– Very positive charge• PKKKRKV• KRxxxxxxxxxxPAAIKKAGQAKKKK
• NES (nuclear export signal)• Some proteins go both ways– Heteroribonucleoprotein complex (hnRNP)• Shuttles mRNA out of nucleus• Returns to pick up more• 38 amino acid signal sends it both directions
Entropy and Transport to Nucleus
• Not energy mechanism innate to nucleoporin
• Uses small GTP/GDP binding protein Ran
Ran as an Energy Mechanism
Controlling Export/Import