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P.P. Kale, V. Addepalli / Int. J. Devl Neuroscience 30 (2012) 640–671 669 A chemical–genetic study of EphB signaling identifies kinase- dependent developmental processes M. Soskis 1,, H. Ho 1 , B. Ataman 1 , C. Zhang 2 , K. Shokat 2 , M. Greenberg 1 1 Harvard Medical School, USA 2 UCSF, USA E-mail address: [email protected] (M. Soskis). EphB receptor tyrosine kinases regulate cell–cell contacts in a variety of processes ranging from axon guidance and topographic mapping to neuronal migration and synapse formation. EphBs bind to a group of ligands, ephrin-Bs, which span the plasma membrane, thus allowing for bidirectional signaling between cells. This complexity combined with the pleiotropic functions of EphBs throughout development has obscured the exact nature of endoge- nous EphB signaling. To refine our understanding of how EphBs signal, we used a chemical–genetic approach to reversibly inhibit EphB receptors in vitro and in vivo. By mutating a residue in the receptor’s ATP-binding pocket, its kinase activity is rendered sensitive to reversible inhibition by allele-specific PP1 derivatives. This approach blocks the kinase activity of EphBs while leaving their scaffolding and reverse signaling capabilities intact and can circumvent the developmental compensation that may occur after genetic lesions. Using this approach we generated knockin mice with mutations in EphB1, EphB2, and EphB3. We demonstrate that EphB kinase activity is required for several distinct processes in nervous system development. Further studies with these allele- specific kinase mice may be especially valuable in exploring the nature of EphB signaling in the adult brain. doi:10.1016/j.ijdevneu.2012.03.329 Comparative gene expression in developing cognitive circuits in common marmoset brain Hiromi Mashiko , Aya C. Yoshida, Satomi S. Kikuchi, Kimie Niimi, Eiki Takahashi, Jun Aruga, Hideyuki Okano, Tomomi Shimogori Lab for Molecular Mechanisms of Thalamus Development, RIKEN BSI, Japan E-mail address: [email protected] (H. Mashiko). The developmental mechanisms by which the cerebral cortex increased in size and complexity during primate evolution are essentially unknown. To understand the molecular mechanisms of how animals evolved higher brain functions such as cognition, self-awareness, and language ability, precise gene expression pro- files are required. In particular, studies of gene expression during early developmental stages are important to reveal homologous and analogous structures. Here, we report gene expression anal- ysis in the neonatal common marmoset (Callithrix jacchus) brain. Using in situ hybridization, we focused especially on areas known to control cognition and their connective areas, including the prefrontal cortex, pulvinar nuclei in the thalamus, hippocampus, primary and secondary visual cortices, and dorsal lateral geniculate nucleus in the thalamus. To directly compare gene expression, we selected marker genes whose expression patterns and functions have been studied in developing mouse brain. We found that many, but not all, cortical markers tested showed similar patterns between mouse and marmoset prefrontal cortex, supporting the idea that regional identity is conserved at a molecular level across mammalian super orders. However, some genes showed very different expression patterns in marmoset brain, providing insight into the combination of conserved and novel genes that resulted in the evolution of new areas and functions. Our results establish a powerful tool kit to advance understanding of primate-specific cognitive circuit development. doi:10.1016/j.ijdevneu.2012.03.331 Norepinephrine stimulates a distinct precursor population in the adult hippocampus Dhanisha Jhaveri a,, Estella Newcombe a , Virginia Nink a , Geoffrey Osborne a , Vidita Vaidya b , Perry Bartlett a a The Queensland Brain Institute, The University of Queensland, Bris- bane, Queensland 4072, Australia b Department of Biological Sciences, Tata Institute of Fundamental Research, Mumbai 400005, India E-mail address: [email protected] (D. Jhaveri). New neurons are continuously generated from a resident pop- ulation of stem and precursor cells in the adult hippocampus. Accumulating evidence points to a direct role of newborn neurons in the functional hippocampal circuitry that leads to enhancement of mood, cognition and memory. The current thinking is that there is a homogenous pool of precursors in the hippocampus that gen- erates these new neurons, all of which contribute equally to the hippocampal functions. Recent studies from our laboratory have shown that the majority of the precursor cells are latent and can be activated by either high levels of K + (mimicking neural exci- tation) or by the monoamine neurotransmitter norepinephrine. Using selective pharmacological blockers, we have shown that 3 adrenergic receptors mediate this norepinephrine-dependent activation. Interestingly, we have found that norepinephrine acti- vates a separate precursor population than KCl and that 3 adrenergic receptor antagonist fails to block KCl-mediated activa- tion of hippocampal precursors. Together, these findings suggest that distinct precursor populations exist in the adult hippocampus, which are regulated by different molecular mechanisms. We are currently phenotyping the different precursor populations using a panel (87) of monoclonal antibodies to CD antigens. We believe that this knowledge will significantly enhance our understanding of heterogeneity amongst precursor populations in the adult hip- pocampus and guide the next generation of therapeutic strategies involving the use of adult-born neurons for the treatment of neuro- psychiatric disorders. doi:10.1016/j.ijdevneu.2012.03.332 Role of neural EGF-like like protein 2 (NELL2) in neuronal dif- ferentiation of P19 cells B.J. Lee a,, D.H. Kim a , S.G. Kang b a University of Ulsan, South Korea b Inje University, South Korea E-mail address: [email protected] (B.J. Lee). NELL2 was first identified as a mammalian homolog of chick NEL (neural EGF-like) protein. It was almost exclusively expressed in neurons of rat brain and has been suggested to play a role in neu- roprotection and neural differentiation. However, no clear evidence has yet been available for detailed function of NELL2. In this study we tried to identify NELL2 function during neural differentiation of mouse embryonic carcinoma P19 cells. Endogenous expression of NELL2 in P19 cells increased in parallel with neural differentia- tion process induced by retinoic acid (RA). We found that rat NELL2 promoter contains RA response element (RARE) and that treatment of RA increased NELL2 promoter activity. Transfection of P19 cells with NELL2 expression vectors induced a dramatic increase in cell aggregation, which in turn, resulting in an increase of neurosphere

Comparative gene expression in developing cognitive circuits in common marmoset brain

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Page 1: Comparative gene expression in developing cognitive circuits in common marmoset brain

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P.P. Kale, V. Addepalli / Int. J. D

chemical–genetic study of EphB signaling identifies kinase-ependent developmental processes

. Soskis 1,∗, H. Ho 1, B. Ataman 1, C. Zhang 2, K. Shokat 2, M.reenberg 1

Harvard Medical School, USAUCSF, USA

-mail address: [email protected] (M. Soskis).EphB receptor tyrosine kinases regulate cell–cell contacts in a

ariety of processes ranging from axon guidance and topographicapping to neuronal migration and synapse formation. EphBs

ind to a group of ligands, ephrin-Bs, which span the plasmaembrane, thus allowing for bidirectional signaling between cells.

his complexity combined with the pleiotropic functions of EphBshroughout development has obscured the exact nature of endoge-ous EphB signaling. To refine our understanding of how EphBsignal, we used a chemical–genetic approach to reversibly inhibitphB receptors in vitro and in vivo. By mutating a residue inhe receptor’s ATP-binding pocket, its kinase activity is renderedensitive to reversible inhibition by allele-specific PP1 derivatives.his approach blocks the kinase activity of EphBs while leavingheir scaffolding and reverse signaling capabilities intact and canircumvent the developmental compensation that may occur afterenetic lesions. Using this approach we generated knockin miceith mutations in EphB1, EphB2, and EphB3. We demonstrate that

phB kinase activity is required for several distinct processes inervous system development. Further studies with these allele-pecific kinase mice may be especially valuable in exploring theature of EphB signaling in the adult brain.

oi:10.1016/j.ijdevneu.2012.03.329

omparative gene expression in developing cognitive circuits inommon marmoset brain

iromi Mashiko ∗, Aya C. Yoshida, Satomi S. Kikuchi, Kimie Niimi,iki Takahashi, Jun Aruga, Hideyuki Okano, Tomomi Shimogori

Lab for Molecular Mechanisms of Thalamus Development, RIKEN BSI,apan

-mail address: [email protected] (H. Mashiko).The developmental mechanisms by which the cerebral cortex

ncreased in size and complexity during primate evolution aressentially unknown. To understand the molecular mechanismsf how animals evolved higher brain functions such as cognition,elf-awareness, and language ability, precise gene expression pro-les are required. In particular, studies of gene expression duringarly developmental stages are important to reveal homologousnd analogous structures. Here, we report gene expression anal-sis in the neonatal common marmoset (Callithrix jacchus) brain.sing in situ hybridization, we focused especially on areas known

o control cognition and their connective areas, including therefrontal cortex, pulvinar nuclei in the thalamus, hippocampus,rimary and secondary visual cortices, and dorsal lateral geniculateucleus in the thalamus. To directly compare gene expression, weelected marker genes whose expression patterns and functionsave been studied in developing mouse brain. We found thatany, but not all, cortical markers tested showed similar patterns

etween mouse and marmoset prefrontal cortex, supporting thedea that regional identity is conserved at a molecular level across

ammalian super orders. However, some genes showed very

ifferent expression patterns in marmoset brain, providing insight

nto the combination of conserved and novel genes that resultedn the evolution of new areas and functions. Our results establish

uroscience 30 (2012) 640–671 669

a powerful tool kit to advance understanding of primate-specificcognitive circuit development.

doi:10.1016/j.ijdevneu.2012.03.331

Norepinephrine stimulates a distinct precursor population inthe adult hippocampus

Dhanisha Jhaveri a,∗, Estella Newcombe a, Virginia Nink a, GeoffreyOsborne a, Vidita Vaidya b, Perry Bartlett a

a The Queensland Brain Institute, The University of Queensland, Bris-bane, Queensland 4072, Australiab Department of Biological Sciences, Tata Institute of FundamentalResearch, Mumbai 400005, India

E-mail address: [email protected] (D. Jhaveri).New neurons are continuously generated from a resident pop-

ulation of stem and precursor cells in the adult hippocampus.Accumulating evidence points to a direct role of newborn neuronsin the functional hippocampal circuitry that leads to enhancementof mood, cognition and memory. The current thinking is that thereis a homogenous pool of precursors in the hippocampus that gen-erates these new neurons, all of which contribute equally to thehippocampal functions. Recent studies from our laboratory haveshown that the majority of the precursor cells are latent and canbe activated by either high levels of K+ (mimicking neural exci-tation) or by the monoamine neurotransmitter norepinephrine.Using selective pharmacological blockers, we have shown that�3 adrenergic receptors mediate this norepinephrine-dependentactivation. Interestingly, we have found that norepinephrine acti-vates a separate precursor population than KCl and that �3adrenergic receptor antagonist fails to block KCl-mediated activa-tion of hippocampal precursors. Together, these findings suggestthat distinct precursor populations exist in the adult hippocampus,which are regulated by different molecular mechanisms. We arecurrently phenotyping the different precursor populations using apanel (∼87) of monoclonal antibodies to CD antigens. We believethat this knowledge will significantly enhance our understandingof heterogeneity amongst precursor populations in the adult hip-pocampus and guide the next generation of therapeutic strategiesinvolving the use of adult-born neurons for the treatment of neuro-psychiatric disorders.

doi:10.1016/j.ijdevneu.2012.03.332

Role of neural EGF-like like protein 2 (NELL2) in neuronal dif-ferentiation of P19 cells

B.J. Lee a,∗, D.H. Kim a, S.G. Kang b

a University of Ulsan, South Koreab Inje University, South Korea

E-mail address: [email protected] (B.J. Lee).NELL2 was first identified as a mammalian homolog of chick

NEL (neural EGF-like) protein. It was almost exclusively expressedin neurons of rat brain and has been suggested to play a role in neu-roprotection and neural differentiation. However, no clear evidencehas yet been available for detailed function of NELL2. In this studywe tried to identify NELL2 function during neural differentiationof mouse embryonic carcinoma P19 cells. Endogenous expressionof NELL2 in P19 cells increased in parallel with neural differentia-tion process induced by retinoic acid (RA). We found that rat NELL2

promoter contains RA response element (RARE) and that treatmentof RA increased NELL2 promoter activity. Transfection of P19 cellswith NELL2 expression vectors induced a dramatic increase in cellaggregation, which in turn, resulting in an increase of neurosphere