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Journal of Molecular Structure, 214 (1992) 25%2’75 Elsevier Science Publishers B.V., Amsterdam
259
Conformational analysis of tricyclic systems including the N-C-O unit by molecular mechanics IV. Perhydrocycloalkane [e] pyrido[l,2-cl-1,3-oxazines
Luis Carballeira”, Berta Fern6ndezb and Adrian0 Miranda”
“Departamento Quimica Pura y Aplicada, Lab. Quimica Fisica, Facultad de Ciencias, Apdo. 874, Vigo (Spain) ‘Departamento Quimica Fisica, Facultad de Q&mica, Santiago de Compostela (Spain)
(Received 1 June 1992)
Abstract
A conformational analysis of the racemic isomers of decahydro-lH,6H-pyrido[1,2-c&1,3- benzoxazine and 5H-cyclopenta[e]pyrido[1,2-+1,3-oxazine and their lo-methylated deriva- tives, all of which contain an N-GO unit, was carried out using a modification of the MM235 force field of Tai and Allinger (J. Am. Chem. Sot., 110 (1966) 2050). The calculated relative energies and geometries were consistent with qualitative experimental estimates.
INTRODUCTION
In previous work [2] we adapted Tai and Allinger’s program ~~285 [l] for the study of linear and cyclic compounds containing N-C-O units. Struc- tural and energy data for a number of bicyclic compounds have been satisfactorily approximated using the new force field [2-51.
The chief problem in the conformational analysis of the tricyclic title compounds (Fig. 1) is the paucity of experimental data, which consist solely of qualitative stabilities estimated from IR and NMR spectra [6]. However, the availability of MM285 results for related bicyclic compounds [3] allows investigation of the structural consequences of adding the third ring. The results are interpreted in terms of the anomeric effect, i.e. the greater stability of the anti form of the chain Lp-X-C-Y, where Lp is a lone pair on X and C-Y is a polar bond [7,8].
Figure 1 shows all the possible diastereoisomers of the tricycles obtained by the fusion of a five- or six-carbon ring to the perhydropyrido[l,2-cl-1,3-
Correspondence to: Dr. L. Carballeira, Departamento Quimica Pura y Aplicada, Lab. Quimica Fisica, Facultad de Ciencias, Apdo. 674, Vigo, Spain.
0022-2860/92/$05.00 0 1992 Elsevier Science Publishers B.V. All rights reserved.
260 L. Carballeira et al./J. Mol. Struct., 274 (1992) 259-275
In
Fig. 1. Diastereoisomers of the compounds studied.
oxazine. In this work, for each diastereoisomer, the conformers are named by a letter indicating the relative orientation of the two heterocycles (A for trans, B for O-inside cis, C for O-outside cis, as in ref. 3 and, for the pentanes, a number indicating which of the two possible stable pentane conformations is present; for methylated derivatives, these denominations are followed by an indication in parentheses of whether the substituent is axial (A) or equatorial (E). (All possible starting configurations were optimized for the unsubstituted systems; 14 for the cyclohexane compounds and 76 for the cyclopentane ones (the twist (C,) form of cyclopentane has three distinct types of bond (with torsion angles of about lo,30 and 400), the fusion of each of which with the oxazine gave a different starting conforma- tion)). In this work, discussion is limited to conformers with energies within 8 kcal mall’ of the most stable, i.e. those making up a significant proportion (at least 0.01%) of the total population at 298 K. Note that none of the isomers complying with this condition has a central ring that can be considered as a boat or twist form. All the results presented were obtained using a dielectric constant of 1.5, preliminary calculations having shown that changing this to 2.25 (at the other extreme of the range for solvents used in expe~ental practice) gave rise to negligible alteration of the calculated energies and geometries.
As well as the unsubstituted molecules, we also studied their lo-methy- lated derivatives, the only members of this class for which at least qualita- tive experimental data are available [6]. The starting conformations used for these derivations were those of the conformers of the unsubstituted molecules with significant populations according to the criteria specified above.
L. Carballeira et al.lJ. Mol. Struct., 274 (1992) 25%275 261
RESULTS AND DISCUSSION
Decahydro-lH, GH-pyrido[l,2-cl-1,3-benzoxazines
Tables 1 and 2 list the chief results for the systems under study. Figure 2 shows those optimized conformations of diastereoisomer III, in which the methyl group is equatorial, and the numbering scheme used. Figure 3(a) shows the optimized conformers of the unsubstituted molecule belonging to diasterioisomers other than III.
I;R=H,n=2
In agreement with experimental estimates, IA and IB are much more stable than IC, which has a negligible population. IA is 3.7 kcal mall’ more stable than IB, whereas in the bicycle perhydropyrido[l,2-cl-1,3-oxazine, the more stable conformer is B because of the anomeric effect [3]. Although the similarity between the relevant parts of the geometries of the bicycle and the tricycle shows the anomeric effect to be of the same magnitude in both, repulsion from the hexane ring in conformer B is sufficient to alter the angles C-N-C, N-C-C (1X.2’), Cl&N-C-C% (by 10’) and LPN-C-O (by 5’), and as a result to invert the relative stabilities of A and B. In addition, the hexane ring of IB contains three gauche butane interactions against only two in IA [9].
The non-planarity h, of the N atom, defined as the distance between this atom and the plane formed by the three atoms to which it is bound, is less in IB than in IA. For conformer A it is the same as for the bicycle, whereas for B the N atom is more planar in the tricycle than the bicycle [3], evidently because repulsion between the two lateral cycles opens up the B conformer. Ring conformations were analysed .in terms of generalized puc- kering parameters [lo]: the puckering amplitude Q is a measure of the ring non-planarity, the angle 0 distinguishes between chair conformations (0 = 0 or 180’) and boat or twist conformations (0 = 900), and B distin- guishes boats (when 0 is an integer multiple of 60’) from twists (when o is an odd integer multiple of 30’). As in the bicycle, the pyrido-oxazine rings are flatter in A than in B, and the values of 6’ for IB indicate considerable distortion of all three chairs (Table 3).
II; R = H, n = 2
Like I, II has a type C conformer (which in this case has a central ring in the twist-boat form) that is much more unstable than its A and B conformers. Unlike I, II has B more stable than A (by 1.65 kcal molll); this is the same order as for the corresponding conformer of lH, GH-pyrido[l,2-
TA
BL
E
1
En
ergi
es
(kca
lmol
-I),
m
ain
ge
omet
rica
l fe
atu
res
(bon
d le
ngt
hs
in
A
and
angl
es
in
deg)
an
d pl
anar
itie
s at
th
e N
at
om
h,
(A)
of
lH,
GH
-dec
ahyd
ropy
rido
[l,2
-cl-
1,3-
ben
zoxa
zin
e (F
ig.
2)
Con
form
er
En
ergy
h
, N
-C
o-c
N-C
-0
LP
N-C
-O
Cl&
N-C
-C5
o-C
-c-C
l4
Cll
-C-C
-Cl4
IA
IB
IIA
IIB
IIIA
IIIB
IIIC
IVC
32.2
513
0.44
88
1.44
9 1.
412
111.
3 62
.9
178.
1
35.9
702
0.41
68
1.43
9 1.
432
113.
1 -
171.
2 -
81.5
30.9
601
0.44
33
1.44
8 1.
412
111.
0 61
.5
178.
5
29.3
068
0.43
74
1.44
0 1.
432
112.
9 -
175.
9 -
71.5
34.6
640
0.44
52
1.44
7 1.
412
111.
4 61
.1
179.
5
33.2
952
0.43
50
1.43
8 1.
432
113.
2 -
175.
7 -
71.0
34.6
884
0.42
36
1.44
6 1.
413
110.
5 -
60.7
17
9.6
34.5
301
0.42
34
1.44
7 1.
413
110.
6 -
59.8
17
8.9
- 68
.2
- 80
.2
- 17
8.4
179.
5
- 17
8.8
179.
0
68.8
177.
3
- 56
.6
- 60
.7
55.5
54.8
- 56
.6
- 57
.4
57.2
- 55
.9
TA
BL
E
2
En
ergi
es
(kca
l m
all’)
, m
ain
ge
omet
rica
l fe
atu
res
(bon
d le
ngt
hs
in A
an
d an
gles
in
deg
) an
d pl
anar
itie
s at
th
e N
ato
m
h,
(A)
of t
he
met
hyl
deri
vati
ve
of
lH,
GH
-dec
ahyd
ropy
rido
[1,2
-c]-
1,3-
ben
zoxa
zin
e (F
ig.
2)
Con
form
er
En
ergy
h
, N
-C
0-c
N-C
O
LP
N-C
O
Cl&
N-C
-C5
o-c-
c-c1
4 C
ll-C
-C-C
l4
WA
) W
E)
IWE
) II
A(A
)
IIA
(E)
IIB
(A)
IIB
(E)
IIIA
(A)
IIIA
( E
)
IIIB
(A)
IIIB
(E)
IIIC
(A)
IIIC
( E
)
IVC
(A)
IVC
(E)
36.6
510
0.42
28
1.45
0 1.
413
111.
6 61
.4
179.
8 34
.576
9 0.
4459
1.
452
1.41
2 11
2.0
63.3
17
8.2
38.8
002
0.41
32
1.44
1 1.
431
113.
3 -
172.
0 -
81.5
35
.149
0 0.
4175
1.
448
1.41
2 11
1.1
60.2
17
9.7
33.4
822
0.43
95
1.45
0 1.
410
111.
5 62
.9
177.
6 37
.358
2 0.
3867
1.
440
1.43
1 11
3.8
- 17
0.5
- 79
.7
31.7
872
0.43
50
1.44
1 1.
432
112.
9 -
176.
8 -
71.1
38
.812
6 0.
4182
1.
447
1.41
2 11
1.5
60.1
17
9.5
37.1
731
0.44
22
1.44
9 1.
410
111.
9 61
.9
179.
0 41
.534
8 0.
3836
1.
438
1.43
1 11
4.1
- 17
0.3
- 79
.2
35.7
940
0.43
19
1.43
9 1.
432
113.
3 -
176.
4 -
70.7
37
.594
5 0.
4211
1.
449
1.41
4 11
0.8
- 60
.2
179.
1 36
.556
2 0.
4178
1.
447
1.41
5 11
1.1
- 60
.2
177.
7 37
.528
6 0.
4209
1.
449
1.41
3 11
0.9
- 59
.4
178.
9
36.5
038
0.41
78
1.44
8 1.
414
110.
9 -
59.5
17
7.6
- 68
.6
- 68
.1
- 81
.6
- 17
7.7
- 17
7.8
178.
6
178.
7
- 17
8.8
- 17
8.5
178.
6
178.
6
69.0
68.4
177.
4
177.
1
- 56
.6
- 56
.5
- 61
.2
55.5
55.5
54.5
54.6
- 56
.0
- 55
.6
- 57
.5
- 57
.6
57.1
56.8
- 55
.7
- 55
.9
264 L. Carballeira et al.lJ. Mol. Struct., 274 (1992) 25.%275
IIINEI IIIBCE) IIIQE)
Fig. 2. Conformers of diastereoisomer III (R = Me, n = 2) and the numbering scheme used.
IA
IIA
Fig. 3. Conformers of diastereoisomers I, II and Iv: (a) R = H, n = 2; (b) R = H; n = 1.
TA
BL
E 3
Pu
cker
ing
coor
din
ates
(Q
, 0,
4)
for
th
e lH
,GH
-pyr
ido[
l,2-c
l-1,
3-be
nzo
xazi
nes
Con
form
er
Cyc
le l
-2%
ti-5
-6
Ql
01
41
Cyc
le
1+7%
8-S
-10
@
02
Cyc
le 4
-11-
12-1
3-14
-5
Q3
03
R=
H
IA
IB
IIA
II
B
IIIA
II
IB
IIIC
N
C
R =
M
e
IA(A
) IA
(E)
IB(E
) II
A(A
) II
A(E
) II
B(A
) II
B(E
) II
IA(A
) II
IA(E
) II
IB(A
) II
IB(E
) II
IC(A
) II
IC(E
) IV
C(A
) IV
C(E
)
0.57
1 3.
3 0.
542
11.6
0.
568
- 2.
3 0.
560
- 3.
0 0.
551
1.7
0.54
1 2.
8 0.
556
- 2.
5 0.
559
- 1.
5
0.569
4.3
0.57
0 4.
2 0.
545
10.7
0.
567
- 3.
5 0.
566
- 4.
5 0.
546
- 4.
8 0.
566
- 3.
0 0.
543
0.7
0.54
7 0.
4 0.
528
3.2
0.54
9 4.
3 0.
556
- 2.
0 0.
551
1.7
0.55
9 -
1.4
0.55
9 -
1.3
14.7
0.
573
- 2.
7 2.
8 0.
565
56.0
0.
535
6.9
83.9
0.
550
174.
9 0.
575
1.1
91.6
0.
587
114.
8 0.
567
- 0.
6 42
.4
0.59
0 14
4.2
0.57
4 -
1.5
68.4
0.
569
138.
7 0.
567
1.1
101.
3 0.
566
135.
5 0.
552
- 2.
8 3.
4 0.
568
129.
7 0.
550
- 2.
7 23
.4
0.58
6
0.5
0.56
6 -
3.7
25.5
0.
564
13.1
0.
576
- 3.
1 3.
6 0.
564
65.8
0.
541
7.0
84.3
0.
548
165.
6 0.
566
2.0
106.
4 0.
585
168.
4 0.
582
1.0
50.8
0.
586
117.
4 0.
552
- 7.
4 0.
5 0.
594
72.7
0.
571
- 0.
9 61
.7
0.59
1 84
.2
0.56
7 -
2.6
97.0
0.
570
96.5
0.
579
- 1.
2 69
.5
0.57
1 10
9.2
0.55
2 7.
1 17
4.8
0.56
6 15
8.4
0.57
1 1.
7 99
.5
0.56
6 13
1.9
0.54
1 -
2.5
36.0
0.
566
144.
2 0.
574
- 1.
5 68
.4
0.56
9 12
3.3
0.53
7 -
1.8
1.2
0.58
6 14
3.0
0.55
6 -
1.9
52.4
0.
586
- 2.
7 29
.0
- 11
.9
32.0
-
1.7
180.
0 -
2.8
162.
0 -
2.2
28.0
-
3.8
32.0
3.
5 16
8.0
- 1.
1 10
9.0
- 2.
8 28
.0
- 2.
7 29
.0
- 13
.0
32.0
-
1.4
170.
0 -
1.8
165.
0 -
3.6
157.
0 -
3.3
161.
0 -
2.3
42.0
-
1.8
31.0
-4
.1
33.0
-
4.2
28.0
3.
6 16
8.0
- 2.
2 28
.0
-1.1
11
6.0
- 1.
1 10
7.0
266 L. Carballeira et al./J. Mol. Struct., 274 (1992) 259-275
cl-1,3-oxazine [3], but inverts the experimentally estimated order [6]. Since interaction between the hexane and pyrido rings is minimal in IIA and IIB, the discrepancy is attributed, as in other molecules [3-51, to underestima- tion of the interaction between the Cl0 methylene group and the oxygen atom or overestimation of the anomeric effect.
The alkane ring fused trans to the bicycle causes hardly any alteration in the chief geometric parameters of the heterocycles or in the anomeric effect, but makes both A and B more planar, especially B, in which the pyrido ring is closer to the hexane ring than A (Fig. 3(a)). Since the N atom is already more planar in the B form of the bicycle than in the A form, this order is retained in the tricycle. Ring puckering Q is hardly altered by the third ring and the heterocycles remain almost perfect chairs; the new cyclohexane ring is likewise an almost perfect chair, and its Q value, 0.582, is strikingly similar to that of free cyclohexane.
111;R = H,n =.2
IIIB is 1.36 kcalmolll more stable than IIIA and IIIC, which have very similar energies. This again contradicts the experimental estimates and is attributed to the stabilizing anomeric effect, and to the above-mentioned underestimation of the interaction between the Cl0 methylene and the 0 atom. IIIA and IIIC have no significant van de Waals interactions and the rest of the contributions to their energies are very similar; the destabilizing effect of the three gauche butane interactions in IIIC is balanced in IIIA by the opening of the lateral ring wings to reduce mutual interaction.
The chief features of the geometry of these conformers are anomeric effects (widening of N-C-O and lengthening of C-O) . Addition of the alkane ring has little effect on the heterocycle geometry. The environment of the N atom is flattest in C and least flat in A. From the bicycle to the tricycle, both the valency and puckering coordinates are hardly altered; the planarity of the hexane ring is virtually the same in all three confor- mers and the values of 6’ reflect almost perfect chair forms.
IV; R = H, n = 2
The only conformer of diastereoisomer IV with a significant population is IVC. IVA and IVB both have twist-boat central rings with very high energies. The only conformer detected experimentally is IVC, in which all three rings are chairs. Comparison with the data for the corresponding lH,GH-pyrido[l,2-cl-1,3-oxazine [3] shows that the alkane ring hardly affects the geometries of the other two. The N atom is slightly more planar than in the bicycle due to repulsion between the hexane and pyrido rings. Heterocycle planarity is hardly altered by the alkane ring, which has the same Q value as free cyclohexane and a 8 value very close to 0’.
L. Carballeira et al./J. Mol. Struct., 274 (1992) 25S275 267
The IO-methylated derivatives
Table 2 lists the results obtained for the lo-methylated derivatives. The most stable conformers have equatorial methyl groups, in keeping with NMR data and with the analysis of the Bohlmann bands in the IR spectrum. The order of the A (axial methyl) conformers is affected by repulsion between methyl and the free pairs of the oxazine 0 atom, which increases the energies of IB(A), IIB(A) and IIIB(A). The energy of IB(A) is further increased by interaction between the methyl group and the hexane ring.
Comparison of the geometries of these derivatives with those of the unsubstituted conformers shows hardly any significant changes in bond lengths, torsion angles or the N-C-O angle, the only exceptions occurring for conformers in which the methyl group is oriented inwards. Specifically, there is a 7’ increase in ClO-N-C-G in IIB(A) and IIIB(A) due to repulsion between the methyl group and the nearby oxygen lone pairs, which opens up the molecule and flattens both the environment of the N atom (leaving IIB(A) and IIIB(A) with very similar h, values) and the heterocycles, especially the central ring (see Q values in Table 3). In addition, the t9 values show that the chair form of the pyrido ring becomes significantly distorted and that the distortion of the central ring similarly increases slightly, while the hexane ring is almost unaffected.
Decahydro-SH-cyclopentapyrido[l,2-c]-1,3-oxazine.s
The chief results for these molecules are listed in Tables 4 and 5. Figure 4 shows those optimized conformations of diastereoisomer III of the methy- lated derivatives in which the methyl group is equatorial, together with the numbering scheme used. Figure 3(b) shows the conformers of the unsub- stituted molecule belonging to diastereoisomers other than III. The number appended to A, B or C in the conformer names distinguishes between positive and negative values of Cl-C-C-C13. In these molecules, the pentane ring, like other five-membered rings, has only two puckering parameters [lo]: 6 distinguishes between the twist (C,) and envelope (C,) conformations of the pentane ring, with values that are integer multiples of 36’ for the former and odd integer multiples of 18’ for the latter, while Q becomes particularly large in envelope conformations in which the atom at the tip of the flap is very far from the plane of the other four atoms.
I;R = H,n=l
Conformer IC is unstable and, in keeping with experimental estimations, IA is more stable than IB-1 or IB-2. IB-1 is 0.88 kcal mall’ more stable than IB-2 due to Cl2 being placed further from the rest of the molecule in the former.
TA
BL
E
4
En
ergi
es
(kca
lmol
-‘),
mai
n
geom
etri
cal
feat
ure
s (b
ond
len
gth
s in
A
an
d an
gles
in
de
g)
and
plan
arit
ies
at
the
N
atom
h
, (A
) of
BW
cycl
open
ta[e
]pyr
ido[
l,2c
]-l,
-oxa
zin
e (F
ig.
4)
Con
form
er
En
ergy
h
, C
-N
c-o
N-G
O
Lp-
N-C
-O
Cl&
N-C
C5
cMX
X13
C
&C
-CC
13
IA
IB-1
IB-2
IIA
IIB
IIIA
-1
IIIA
-2
IIIB
-1
IIIB
-2
IIIC
IVC
36.0
308
0.44
64
1.44
8 1.
411
110.
7 60
.9
31.9
047
0.42
58
1.43
9 1.
430
112.
8 -
175.
9
38.1
784
0.42
38
1.44
1 1.
431
113.
1 -
173.
6
36.7
169
0.44
13
1.45
4 1.
417
111.
6 63
.6
35.5
630
0.43
61
1.44
6 1.
438
113.
9 -
174.
3
39.2
693
0.45
15
1.44
5 1.
411
111.
2 60
.1
39.4
115
0.45
28
1.44
5 1.
410
110.
7 58
.5
37.0
914
0.43
71
1.43
7 1.
429
112.
9 -
179.
5
37.2
574
0.43
52
1.43
7 1.
431
113.
3 -
177.
4
38.8
595
0.42
38
1.44
6 1.
412
110.
3 -
59.5
41.0
766
0.41
99
1.45
2 1.
418
111.
4 -
61.2
176.
8
- 80
.6
- 80
.1
179.
0
- 72
.1
178.
4
177.
7
- 71
.2
- 71
.1
- 17
8.8
179.
2
-739
15
.3
- 92
.5
- 24
.3
- 84
.5
31.2
- 17
0.3
- 16
.2
- 17
2.3
- 13
.7
167.
3 2.
2
162.
6 34
.3
159.
1 37
.6
165.
7 3.
4
74.1
-
19.5
169.
8 10
.5
TA
BL
E
5
En
ergi
es
(kca
l m
ol-I
),
mai
n
geom
etri
cal
feat
ure
s (b
ond
len
gth
s in
A a
nd
angl
es
in d
eg)
and
plan
arit
ies
at t
he
N a
tom
h
, (A
) of
th
e m
eth
yl
deri
vati
ve
of B
H-c
yclo
pen
ta[e
]pyr
ido[
l,2c
]-l,
&ox
azin
e (F
ig.
4)
Con
form
er
En
ergy
h
, C
-N
IA(A
) 40
.204
8 0.
4214
1.
448
IA(E
) 38
.341
0 0.
4444
1.
451
LB
-l(E
) 40
.398
0 0.
4224
1.
442
IB-2
(E)
41.3
559
0.42
08
1.44
3
IWA
) 40
.858
8 0.
4150
1.
454
IIA
(E)
38.9
992
0.43
85
1.45
6
IIB
(A)
43.5
627
0.38
51
1.44
7
IIB
(E)
38.1
434
0.43
28
1.44
8
IIIA
-l(A
) 43
.435
8 0.
4268
1.
445
IIIA
-l(E
) 41
.758
4 0.
4491
1.
448
IIIA
d(E
) 41
.906
3 0.
4501
1.
447
IIIB
-l(A
) 44
.630
0 0.
3865
1.
438
IIIB
-l(E
) 39
.293
6 0.
4336
1.
438
IIIB
-2(A
) 44
.754
8 0.
3864
1.
437
IIIB
-2(E
) 39
.378
7 0.
4341
1.
439
IIIC
(A)
41.7
675
0.42
14
1.44
9
IIIC
(E)
40.7
674
0.41
78
1.44
8
IVC
(A)
44.0
748
0.41
79
1.45
4
IVC
(E)
43.0
285
0.41
40
1.45
3
c-o
N-GO
LP
N-C
-O
Clw
SC
-c5
O-C
CC
13
1.41
2 11
0.9
59.3
1.41
1 11
1.4
61.3
1.43
0 11
2.9
- 17
6.5
1.43
1 11
3.2
- 17
4.4
1.41
7 11
1.8
61.5
1.41
6 11
2.3
63.8
1.43
7 11
4.7
- 16
8.9
1.43
9 11
4.0
- 17
4.8
1.41
2 11
1.3
57.7
1.41
1 11
1.9
60.1
1.41
0 11
1.5
58.9
1.42
8 11
4.0
- 17
4.1
1.42
9 11
2.9
179.
9
1.43
0 11
4.2
- 17
3.4
1.43
1 11
3.1
179.
4
1.41
3 11
0.6
- 59
.1
1.41
3 11
0.7
- 59
.6
1.41
8 11
1.7
- 60
.7
1.41
8 11
1.7
- 61
.1
178.
6
177.
0
- 80
.8
- 80
.1
- 17
8.8
179.
3
- 80
.3
- 72
.3
179.
8
178.
7
177.
8
- 79
.7
- 71
.3
- 79
.6
- 70
.7
- 17
9.1
179.
6
178.
8
178.
0
- 73
.9
- 73
.6
- 93
.7
- 86
.0
- 17
0.4
- 17
0.2
- 17
2.8
- 17
2.9
166.
2
167.
3
162.
8
157.
3
158.
4
161.
2
162.
4
74.0
73.8
169.
8
169.
6
14.4
17.2
- 25
.2
32.3
- 16
.2
- 14
.7
- 14
.3
- 16
.1
- 1.
5
1.3
34.3
38.7
37.6
- 8.
7
- 7.
1
- 17
.8
- 17
.7
11.2
11.7
270 L. Carballeira et al./J. Mol. Struct., 274 (1992) 259-275
IIIA-2(E)
IIIB-I(E)
/r
IIIB-e(E,
Fig. 4. Conformers of diastereoisomer III (R = Me, n = 1) and the numbering scheme used.
Addition of the pentane ring to the corresponding bicycles [3] hardly altered the geometry of the heterocycles. Like the IB conformer of the cyclohexane derivative, IB-1 and IB-2 have flatter N atoms than the B conformer of the parent bicycle, because of repulsion between the pyrido and alkane cycles. For the same reason, the heterocycles of IB-1 and IB-2 are all much flatter than those of the parent bicycle [3], whereas the heterocycle planarities in IA are very similar to those of the bicycle. According to the values of the puckering parameter 43, the pentane ring is an envelope in IA and IB-2, and an almost perfect twist in IB-1.
II; R = H, n = 1
As in the cyclohexane-containing molecules, the most stable of all the
L. Carballeira et al.lJ. Mol. Struct., 274 (1992) 259-275 271
coroners of the molecule is IIB. Again, inversion of the expe~entally estimated stability order of IIA and IIB is attributed to underestimation of the interaction between the Cl0 methylene group and the 0 atom. The geometrical parameters of the heterocycles hardly differ from those of the corresponding bicycles, but as usual for the tricycles in this work, adding the third ring flattens the enviro~ent of the N atom. The puckering amplitude of the oxazine ring is also less than in the bicycle, but not that of the pyrido ring, which again shows the minimal effect of the third ring in these conformers. The pentane ring, an almost perfect envelope, has very similar valency coordinates in IIA and IIB.
III; R = H, n = 1
Decahydro-5H-cyclopentapyrido[l,2-cl-1,3-oxazine has five stable dia- stereoisomer III conformers, because both IIIA and IIIB are stable for two forms of the pentane ring (Fig. 4). For the same reasons as in the case of the hexanes, the most stable calculated conformers are the IIIB forms.
All the internal coordinates of the heterocycles are very similar to those of the parent bicycles. IIIA-1 differs from IIIA-2, and IIIB-1 from IIIB-2, only in the torsion angle C4-C-GC13, which makes the pentane rings of IIIA-1 and IIIB-2 twist and those of the other two conformers envelope. The planarity of the N atom is virtually the same as for the parent bicycles and the corresponding cyclohexane derivatives. The puckering coordinates show flattening of the central ring, which is also distorted from its perfect chair conformation, especially in the conformers with envelope (IIIA-2 and IIIB-1) or twist (IIIA-1 and IIIB-2) pentane rings. The pentane ring of IIIC has a conformation intermediate between envelope and twist.
IV;R=H,n=l
As in the parent bicycle and for the same reasons, the only stable form is IVC (Fig. 3(b)), which is, in any case, the most unstable of all the compounds with n = 1, in agreement with experimental estimations. Its geometry is very similar to those of the parent bicycle and the cyclohexane derivatives, but the central ring is somewhat less flat and chairlike. The pentane ring is a distorted envelope.
The IO-methylated derivatives
Tables 5 and 6 list the results for the lo-methylatecl derivatives. As in the case of the cyclohexane derivatives and in keeping with experimental findings, in all the conformers the equatorial arrangement of the methyl group is favoured over the axial one. For the same reasons as in the
TA
BL
E 6
Pu
cker
ing
coor
din
ates
(Q
, 0,
4)
for
th
e U
+cy
clop
enta
[e]p
yrid
o[l,
2c]-
1,3-
oxaz
ines
Con
form
er
Cyc
le l
-2-3
-4-5
6
Q1
01
Cyc
le
1+7-
8910
Q2
02
Cyc
le 4
-11-
12-1
3-5
Q3
43
R=
H
L4
IB-1
IB
-2
IIA
II
B
IIIA
-1
IIIA
-2
IIIB
-1
IIIB
-2
IIIC
IV
C
R =
M
e
IA(A
) IA
(E)
IB-l
(E)
IB-2
(E)
IIA
(A)
IIA
(E)
IIB
(A)
IIB
(E)
IIIA
-l(A
) II
IA-l
(E)
IIIA
-2(E
)
0.54
5 -
4.2
147.
4 0.
576
0.50
6 -
16.0
13
7.9
0.54
0 0.
528
11.3
77
.3
0.52
8 0.
592
- 6.
4 96
.7
0.57
7 0.
581
- 5.
0 12
4.0
0.55
5 0.
521
- 6.
8 78
.7
0.57
9 0.
509
- 11
.3
89.4
0.
581
0.50
2 -
15.5
14
9.7
0.56
1 0.
516
9.0
151.
7 0.
563
0.53
6 -
5.5
81.7
0.
552
0.57
5 4.
2 68
.9
0.55
2
0.54
4 -
5.0
158.
8 0.
568
0.54
4 -
3.9
159.
5 0.
579
0.51
2 -
16.6
13
1.9
0.54
5 0.
533
11.2
87
.8
0.53
4 0.
588
- 6.
4 10
4.3
0.56
9 0.
590
- 6.
9 97
.7
0.58
1 0.
569
- 6.
4 13
2.8
0.54
0 0.
586
- 3.
5 12
9.5
0.55
8 0.
516
- 7.
9 89
.3
0.57
2 0.
519
- 6.
6 79
.8
0.58
3 0.
506
- 10
.7
92.1
0.
585
- 0.
3 54
.3
0.40
8 15
9.0
6.2
92.3
0.
406
109.
0 6.
6 64
.5
0.37
8 16
5.0
- 0.
8 97
.1
0.46
9 19
.0
2.7
126.
0 0.
480
19.0
-
0.7
110.
7 0.
395
176.
0 -
0.9
122.
9 0.
413
163.
0 2.
9 10
5.7
0.40
7 15
7.0
2.6
79.9
0.
385
148.
0 -
2.4
10.1
0.
410
8.0
- 2.
8 9.
9 0.
469
167.
0
- 1.
4 50
.9
0.40
8 16
0.0
- 0.
7 11
.8
0.40
9 15
6.0
6.5
95.0
0.
404
108.
0 6.
8 65
.3
0.37
5 16
2.0
- 1.
2 78
.6
0.47
0 19
.0
- 0.
3 63
.0
0.47
0 17
.0
9.0
159.
5 0.
484
18.0
2.
9 13
5.7
0.48
3 16
.0
- 1.
2 84
.7
0.39
1 17
7.0
- 0.
4 43
.4
0.39
7 17
8.0
- 0.
9 96
.3
0.41
5 16
4.0
274 L. Carballeira et al.lJ. Mol. Struct., 274 (1992) 25S275
cyclohexane derivatives, IIB(A), IIIB-l(A) and IIIB-2(A) are made relative- ly unstable by the methyl group (and IB-l(A) and IB-2(A) even more so). Conformers differing only in the form of the pentane ring differ little in energy, the only exception being that IIIA-2(A) is much more unstable than IIIA-l(A).
The geometries of these structures are very similar to those of the corres- ponding conformers of the unsubstituted molecule, except (for the same reasons as for the cyclohexane derivatives) for IIB(A), IIIB-l(A) and IIIB- 2(A); the only significant changes in the pentane ring concern the angle C&C-C-C13 in IIIB-2(A) and IIIB-B(E). Only in IIIB-l(A) and IIIB-l(E) is the environment of the N atom appreciably flatter (for the reasons men- tioned previously) than in the corresponding methylated bicycle [3]. The rings of IIB(A), IIIA-l(A), IIIB-l(A) and IIIB-2(A) are flatter than in the unmethylated molecules.
Only in the type II and type IV isomers is the central ring less flat and chairlike than in the parent bicycle, although in several other conformers the central ring is totally distorted. In most conformers the pentane ring is envelope, but in IB-1 (E), IIIA-l(A) and IIIA-l(E) it is twist.
CONCLUSIONS
Introducing the 5- or g-membered alkane ring into the parent bicycle causes minimal alteration of the valency coordinates of the heterocycles, but increases the planarity of both the heterocycles and the environment of the nitrogen N atom. For the unmethylated molecule, the order of stabilities among conformers is the same for the cyclopentane as for the cyclohexane derivatives. For the lo-methylated derivatives, conformers with the methyl group equatorial are more stable than those with the methyl group axial.
ACKNOWLEDGEMENTS
This work was supported by grants from the Spanish Interministerial Committee for Science and Technology and the Xunta de Galicia.
REFERENCES
1 J.C. Tai and N.L. Allinger, J. Am. Chem. Sot., 110 (1988) 2050. 2 B. Fernandez, M.A. Rios and L. Carballeira, J. Comput. Chem., 12 (1991) 78. 3 B. Fernandez, L. Carballeira and M.A. Rios, J. Mol. Struct., 245 (1991) 53. 4 B. Fernbndez, M.A. Rios and L. Carballeira, J. Mol. Struct., 246 (1991) 301. 5 B. Fernbndez, L. Carballeira and M.A. Rios, J. Mol. Struct., 263 (1991) 157. 6 (a) T.A. Crabb and E.R. Jones, Tetrahedron, 26 (1970) 1217. (b) T.A. Crabb and R.F.
Newton, Tetrahedron, 24 (1968) 4423. 7 L. Schafer, C. Van Aslenoy, J.O. Williams, J.N. Scarsdale and H.J. Geise, J. Mol. Struct.
L. Carballeira et al./J. Mol. Struct., 274 (1992) 259-275 275
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