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(A)For Cell Lines Refractory to Transition, rhLaminin-521 Provides Optimum Cell Survival Post-Transition from KSR-Based Medium System to CTS™ Essential 8™ (B)PSCs Can Subsequently Be Transferred to CTS™ rhVTN-N for Remainder of Culture RESULTS Figure 4. PSCs Cultured in CTS™ Essential 8™/ CTS™ rhVTN-N System Maintain Pluripotency ABSTRACT Pluripotent stem cell (PSC) culture using the xeno- free Essential 8™ Medium/truncated recombinant human Vitronectin system has been shown to support normal PSC properties and provide a large pool of cells for disease modeling and drug development. As research moves from translational to clinical research, general regulatory guidance from the US Food and Drug Administration (FDA) indicates that, cGMP manufactured, or clinical grade reagents should be used whenever available as ancillary reagents to minimize downstream risk to patients. Thus, we sought to identify regulatory compliant, animal-origin- free alternatives for growth factors contained within the Essential 8™ Medium, producing a qualified ancillary system for PSC expansion. Here we present data to support a seamless transition from the xeno- free Essential 8™ Medium system to the Cell Therapy Systems (CTS™) animal-origin free system. Compatibility is shown with existing cGMP- manufactured passaging reagents: Versene Solution for clumped cell passaging and CTS™ TrypLE™ Select combined with RevitaCell™ Supplement for single cell passaging. Upon expansion, PSCs are shown to maintain normal PSC properties, including morphology, pluripotency, karyotype, and trilineage differentiation potential. Together this system provides a consistent, feeder-free PSC culture medium for translational and clinical research. INTRODUCTION CONCLUSIONS The CTS™ Essential 8™/CTS™ rhVTN-N system provides a seamless transition from bench to clinic, providing long- term maintenance of normal PSC properties This CTS™ system provides reliable ancillary reagents for PSC culture upstream of manufacturing of cell, gene, or tissue-based products. The CTS™ system is compatible with existing reagents including RevitaCell™ Supplement for post-thaw recovery and single cell passaging applications, as well as compatible with Gibco™ differentiation kits. Please contact rhonda [email protected] or [email protected] for additional information, including additional scale-up protocols using this medium system. TRADEMARKS/LICENSING © 2018 Thermo Fisher Scientific Inc. All rights reserved. All trademarks are the property of Thermo Fisher Scientific and its subsidiaries unless otherwise specified. Essential 8 is a trademark of Cellular Dynamics International, Inc. TaqMan is a trademark of Roche Molecular Systems. For Research Use or Manufacturing of Cell, Gene, or Tissue-Based Products. CAUTION: Not intended for direct administration into humans or animals. Thermo Fisher Scientific • 5781 Van Allen Way • Carlsbad, CA 92008 • thermofisher.com Mohan Vemuri, Ph.D., Lauren E. Sangenario, M.S., Rhonda A. Newman, Ph.D., and David T. Kuninger, Ph.D., Thermo Fisher Scientific, 7311 Governor’s Way, Frederick, MD 21704 Development of Feeder-Free PSC Culture System Enabling Translational & Clinical Research Figure 1. RUO to CTS™ Essential 8™ Media Conversion To provided a seamless transition from research to translational needs, the CTS™ Essential 8™ Medium is formulated with animal origin free growth factors and undergoes increased quality standards as highlighted in the table above. Figure 2. Simple Transition options to transfer from RUO to CTS™ PSC Culture Systems Cultures previously cultured in the RUO PSC culture system can easily be transitioned to the CTS™ Essential 8™/ CTS™ rhVTN-N system using the above transition schemes. OCT4 SSEA4 DAPI Merge TRA1-60 SOX2 DAPI Merge H9 ESCs cultured in CTS™ Essential 8™ Medium on CTS™ rhVTN-N were propagated for >30 passages using Versene Solution for passaging. PSCs were shown to maintain normal pluripotency as assessed using the Pluripotent Stem Cell 4-Marker Immunocytochemistry Kit (Cat. No. A24881). Figure 5. PSCs Cultured in CTS™ Essential 8™/ CTS™ rhVTN-N System Maintain Normal Karyotype Figure 9. rhLaminin-521 Can Be Used to Support Transition from Feeder-Dependent KSR-Based System to CTS™ Essential 8™/ CTS™ rhVTN-N System (A) Feeder-Dependent iPSCs were collagenase passaged according to Essential 8™ Adaptation Kit protocol and seeded on various extracellular matrices for recovery in CTS™ Essential 8 Medium. rhLaminin-521 was shown to support optimum transition of challenging PSCs. (B) Cells are subsequently Versene passaged onto CTS™ rhVTN-N for the remainder of culture. 0 25 50 75 100 0 50 100 %Confluency (IncuCyte ZOOM®- Monitored) Time Post-Passage (hrs) 0.5 ug/cm2 CTS™ rhVTN-N 0.5 ug/cm2 rhLaminin- 521 1:100 Geltrex 0 25 50 75 100 0 50 100 150 %Confluency (IncuCyte ZOOM®-Monitored) Time Post-Passage (hrs) 0.5 ug/cm2 CTS™ rhVTN-N, From 0.5 ug/cm2 rhLaminin-521 (A) Post-Thaw Transition Cryopreserved PSCs previously cultured in RUO Essential 8 Recover in CTS Essential 8 +/- RevitaCell Supplement Thaw (B) Post-Passage Transition PSCs cultured in RUO Essential 8 Recover in CTS Essential 8 Versene Passage Figure 3. PSCs Cultured in CTS™ Essential 8™/ CTS™ rhVTN-N System Maintain Morphology Comparable to RUO System Essential 8™ Medium CTS™ Essential 8™ Medium Gibco™ Human Episomal iPSCs cultured in CTS™ Essential 8™ Medium on CTS™ rhVTN-N were propagated for 10 passages using Versene Solution for passaging. PSCs were shown to maintain normal morphology as assessed by phase contrast imaging. (A) Qualitative ICC Analysis (B) Quantitative ICC Analysis Red = pluripotent reference set Blue = non-pluripotent reference set (C) Pluritest™ Pluripotency Plot Gibco™ Human Episomal iPSCs cultured in CTS™ Essential 8™ Medium on CTS™ rhVTN-N were propagated for 3 passages using Versene Solution for passaging. PSCs were shown to maintain normal pluripotency as assessed by (B) Quantitative ICC using the Cellomics™ CellInsight™ and (C) Pluritest™, an open- access bioinformatic assay for pluripotency of human cells based upon their gene expression profiles. Essential 8™ Medium CTS™ Essential 8™ Medium (A) G-Band Karyotype (B) KaryoStat™ Assay Gibco™ Human Episomal iPSCs cultured in CTS™ Essential 8™ Medium on CTS™ rhVTN-N were propagated using Versene Solution for passaging. PSCs were shown to maintain normal karyotype as assessed (A) at P10 via G-Band Karyotype Assessment and (B) at P5 via Karyostat™ Assay . Figure 6. PSCs Cultured in CTS™ Essential 8™/ CTS™ rhVTN-N System Maintain Trilineage Differentiation Potential (A) Trilineage Differentiation Potential Maintained As Assessed by TaqMan™ hPSC Scorecard™ Panel Undifferentiated vs. Embryoid Bodies (B) Trilineage Differentiation Potential Maintained As Assessed by Directed Differentiation Using Thermo Fisher Scientific Kits CXCR4 TNNT2 NKX2.5 NESTIN SOX2 OTX2 FOXA2 Gibco™ PSC Definitive Endoderm Induction Kit Gibco™ PSC Cardiomyocyte Differentiation Kit Gibco™ Neural Induction Medium Gibco™ Dopaminergic Neuron Differentiation Kit Following expansion of PSCs in CTS™ Essential 8™ Medium on CTS™ rhVTN-N using Versene Solution for passaging, PSCs were evaluated for maintenance of trilineage differentiation potential via two methods. (A) Random differentiation of PSCs with subsequent evaluation using the TaqMan™ hPSC Scorecard™ Panel. (B) Directed differentiation using kits available from Thermo Fisher Scientific: differentiation to the endodermal lineage using the Gibco™ PSC Definitive Endoderm Induction Kit (Cat. No. A3062601), differentiation to mesodermal lineage using the Gibco™ PSC Cardiomyocyte Differentiation Kit (Cat. No. A2921201), and finally to the ectodermal lineage using the Gibco™ Neural Induction Medium (Cat. No. A1647801) and the Gibco™ Dopaminergic Neuron Differentiation Kit (Cat. No. A3147701). Fibroblast culture Reprogramming Growth Passaging Banking/ Recovery CTS KnockOut Serum Replacement XF CTS CytoTune 2.1 Reprogramming Kit VTN-N matrix Versene CTS Synth-a-freeze rhLaminin-521 CTS TrypLE Select with RevitaCell Supplement during recovery PSC Cryopreservation Kit RevitaCell Supplement Characterization PSC Live Staining Kits PSC Immunocytochemistry Kits 3-Germ Layer Immunocytochemistry Kit TaqMan hPSC Scorecard Panel—for assessing tri-lineage differentiation potential PrimeView Gene Expression Assay (PluriTest compatible)—for testing pluripotency KaryoStat Assays—for checking genomic stability Cellular Molecular Figure 7. Products Compatible with CTS™ Essential 8™ Medium Gibco™ Human Episomal iPSC Line cultured in CTS™ Essential 8™ Medium on CTS™ rhVTN-N was passaged using TrypLE™ Select and recovered at 25K viable cells/cm 2 in CTS™ Essential 8™ on CTS™ rhVTN-N (A) including (green triangles) or excluding (blue circles) RevitaCell™ Supplement (Cat. No. A26445-01) for the first 24 hours post- passage. Media was exchanged 24 hours post-passage with CTS™ Essential 8™ Medium alone. 0 20 40 60 80 100 0 100 200 %Confluency (IncuCyte ZOOM®-Monitored) Time Post-Single Cell Passaging (hrs) Figure 8. RevitaCell™ Supplement Provides Support When Single Cell Passaging is Required CTS™ Essential 8™ Medium + RevitaCell™ Supplement for 1 st 24 Hours CTS™ Essential 8™ Medium Alone Gain Loss

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Page 1: Development of Feeder-Free PSC Culture System Enabling

(A)For Cell Lines Refractory to Transition, rhLaminin-521 Provides Optimum Cell Survival Post-Transition from KSR-Based Medium System to CTS™ Essential 8™

(B)PSCs Can Subsequently Be Transferred to CTS™ rhVTN-Nfor Remainder of Culture

RESULTS

Figure 4. PSCs Cultured in CTS™ Essential 8™/ CTS™ rhVTN-N System Maintain Pluripotency

ABSTRACT

Pluripotent stem cell (PSC) culture using the xeno-free Essential 8™ Medium/truncated recombinanthuman Vitronectin system has been shown to supportnormal PSC properties and provide a large pool ofcells for disease modeling and drug development. Asresearch moves from translational to clinical research,general regulatory guidance from the US Food andDrug Administration (FDA) indicates that, cGMPmanufactured, or clinical grade reagents should beused whenever available as ancillary reagents tominimize downstream risk to patients. Thus, wesought to identify regulatory compliant, animal-origin-free alternatives for growth factors contained withinthe Essential 8™ Medium, producing a qualifiedancillary system for PSC expansion. Here we presentdata to support a seamless transition from the xeno-free Essential 8™ Medium system to the Cell TherapySystems (CTS™) animal-origin free system.Compatibility is shown with existing cGMP-manufactured passaging reagents: Versene Solutionfor clumped cell passaging and CTS™ TrypLE™Select combined with RevitaCell™ Supplement forsingle cell passaging. Upon expansion, PSCs areshown to maintain normal PSC properties, includingmorphology, pluripotency, karyotype, and trilineagedifferentiation potential. Together this system providesa consistent, feeder-free PSC culture medium fortranslational and clinical research.

INTRODUCTION CONCLUSIONS• The CTS™ Essential 8™/CTS™ rhVTN-N system provides

a seamless transition from bench to clinic, providing long-term maintenance of normal PSC properties

• This CTS™ system provides reliable ancillary reagents forPSC culture upstream of manufacturing of cell, gene, ortissue-based products.

• The CTS™ system is compatible with existing reagentsincluding RevitaCell™ Supplement for post-thaw recoveryand single cell passaging applications, as well ascompatible with Gibco™ differentiation kits.

• Please contact [email protected] [email protected] for additionalinformation, including additional scale-up protocols using thismedium system.

TRADEMARKS/LICENSING© 2018 Thermo Fisher Scientific Inc. All rights reserved. All trademarks arethe property of Thermo Fisher Scientific and its subsidiaries unlessotherwise specified. Essential 8 is a trademark of Cellular DynamicsInternational, Inc. TaqMan is a trademark of Roche Molecular Systems.For Research Use or Manufacturing of Cell, Gene, or Tissue-BasedProducts. CAUTION: Not intended for direct administration into humans oranimals.

Thermo Fisher Scientific • 5781 Van Allen Way • Carlsbad, CA 92008 • thermofisher.com

Mohan Vemuri, Ph.D., Lauren E. Sangenario, M.S., Rhonda A. Newman, Ph.D., and David T. Kuninger, Ph.D.,Thermo Fisher Scientific, 7311 Governor’s Way, Frederick, MD 21704

Development of Feeder-Free PSC Culture SystemEnabling Translational & Clinical Research

Figure 1. RUO to CTS™ Essential 8™ Media Conversion

To provided a seamless transition from research to translationalneeds, the CTS™ Essential 8™ Medium is formulated with animalorigin free growth factors and undergoes increased quality standardsas highlighted in the table above.

Figure 2. Simple Transition options to transfer from RUO to CTS™ PSC Culture Systems

Cultures previously cultured in the RUO PSC culture system caneasily be transitioned to the CTS™ Essential 8™/ CTS™ rhVTN-Nsystem using the above transition schemes.

OCT4 SSEA4 DAPI Merge

TRA1-60 SOX2 DAPI Merge

H9 ESCs cultured in CTS™ Essential 8™ Medium on CTS™ rhVTN-Nwere propagated for >30 passages using Versene Solution forpassaging. PSCs were shown to maintain normal pluripotency asassessed using the Pluripotent Stem Cell 4-MarkerImmunocytochemistry Kit (Cat. No. A24881).

Figure 5. PSCs Cultured in CTS™ Essential 8™/ CTS™ rhVTN-N System Maintain Normal Karyotype

Figure 9. rhLaminin-521 Can Be Used to Support Transition from Feeder-Dependent KSR-Based System to CTS™ Essential 8™/ CTS™ rhVTN-N System

(A) Feeder-Dependent iPSCs were collagenase passaged according toEssential 8™ Adaptation Kit protocol and seeded on various extracellularmatrices for recovery in CTS™ Essential 8 Medium. rhLaminin-521 wasshown to support optimum transition of challenging PSCs. (B) Cells aresubsequently Versene passaged onto CTS™ rhVTN-N for the remainderof culture.

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(A) Post-Thaw Transition

Cryopreserved PSCs previously cultured in

RUO Essential 8™

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+/- RevitaCell™ Supplement

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PSCs cultured in RUO Essential 8™

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Figure 3. PSCs Cultured in CTS™ Essential 8™/ CTS™ rhVTN-N System Maintain Morphology Comparable to RUO System

Essential 8™ Medium

CTS™ Essential 8™ Medium

Gibco™ Human Episomal iPSCs cultured in CTS™ Essential 8™Medium on CTS™ rhVTN-N were propagated for 10 passages usingVersene Solution for passaging. PSCs were shown to maintain normalmorphology as assessed by phase contrast imaging.

(A) Qualitative ICC Analysis

(B) Quantitative ICC Analysis

Red = pluripotent reference set Blue = non-pluripotent reference set

(C) Pluritest™ Pluripotency PlotGibco™ Human Episomal iPSCs culturedin CTS™ Essential 8™ Medium on CTS™rhVTN-N were propagated for 3 passagesusing Versene Solution for passaging.PSCs were shown to maintain normalpluripotency as assessed by (B)Quantitative ICC using the Cellomics™CellInsight™ and (C) Pluritest™, an open-access bioinformatic assay forpluripotency of human cells based upontheir gene expression profiles.

Essential 8™ Medium

CTS™ Essential 8™ Medium

(A) G-Band Karyotype

(B) KaryoStat™ Assay

Gibco™ Human Episomal iPSCs culturedin CTS™ Essential 8™ Medium on CTS™rhVTN-N were propagated using VerseneSolution for passaging. PSCs were shownto maintain normal karyotype as assessed(A) at P10 via G-Band KaryotypeAssessment and (B) at P5 via Karyostat™Assay .

Figure 6. PSCs Cultured in CTS™ Essential 8™/ CTS™ rhVTN-N System Maintain Trilineage Differentiation Potential

(A) Trilineage Differentiation Potential Maintained As Assessed by TaqMan™ hPSC Scorecard™ Panel

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(B) Trilineage Differentiation Potential Maintained As Assessed by Directed Differentiation Using Thermo FisherScientific Kits

CXCR4 TNNT2NKX2.5

NESTINSOX2

OTX2FOXA2

Gibco™ PSC DefinitiveEndoderm Induction Kit

Gibco™ PSC CardiomyocyteDifferentiation Kit

Gibco™ Neural Induction Medium

Gibco™ DopaminergicNeuron Differentiation Kit

Following expansion of PSCs in CTS™ Essential 8™ Medium onCTS™ rhVTN-N using Versene Solution for passaging, PSCs wereevaluated for maintenance of trilineage differentiation potential via twomethods. (A) Random differentiation of PSCs with subsequentevaluation using the TaqMan™ hPSC Scorecard™ Panel. (B)Directed differentiation using kits available from Thermo FisherScientific: differentiation to the endodermal lineage using the Gibco™PSC Definitive Endoderm Induction Kit (Cat. No. A3062601),differentiation to mesodermal lineage using the Gibco™ PSCCardiomyocyte Differentiation Kit (Cat. No. A2921201), and finally tothe ectodermal lineage using the Gibco™ Neural Induction Medium(Cat. No. A1647801) and the Gibco™ Dopaminergic NeuronDifferentiation Kit (Cat. No. A3147701).

Fibroblast culture Reprogramming Growth Passaging Banking/

Recovery

CTS KnockOut Serum

Replacement XF

CTS CytoTune 2.1 Reprogramming Kit

VTN-N matrix Versene CTS Synth-a-freeze

rhLaminin-521CTS TrypLE Select

with RevitaCell Supplement

during recovery

PSC Cryopreservation

Kit

RevitaCell Supplement

CharacterizationPSC Live Staining Kits

PSC Immunocytochemistry Kits3-Germ Layer Immunocytochemistry Kit

TaqMan hPSC Scorecard Panel—for assessing tri-lineage differentiation potentialPrimeView Gene Expression Assay (PluriTest compatible)—for testing pluripotency

KaryoStat Assays—for checking genomic stability

Cellular

Molecular

Figure 7. Products Compatible with CTS™ Essential 8™ Medium

Gibco™ Human Episomal iPSC Linecultured in CTS™ Essential 8™Medium on CTS™ rhVTN-N waspassaged using TrypLE™ Select andrecovered at 25K viable cells/cm2 inCTS™ Essential 8™ on CTS™rhVTN-N (A) including (greentriangles) or excluding (blue circles)RevitaCell™ Supplement (Cat. No.A26445-01) for the first 24 hours post-passage. Media was exchanged 24hours post-passage with CTS™Essential 8™ Medium alone.

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Figure 8. RevitaCell™ Supplement Provides Support When Single Cell Passaging is Required

CTS™ Essential 8™ Medium + RevitaCell™Supplement for 1st

24 Hours

CTS™ Essential 8™ Medium Alone

Gain

Loss