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Electronic Supporting Information
Microhydration around Protonated Biomolecular Building Blocks: Protonated Pyrimidine
Kuntal Chatterjee and Otto Dopfer*
Institut für Optik und Atomare Physik, TU Berlin, Hardenbergstr. 36, 10623 Berlin, Germany.
* Corresponding author: [email protected]
Table S1. Experimental and theoretical (calculated at B3LYP-D3/aug-cc-pVTZ level) data of structural
parameters of neutral Pym and respective changes upon protonation (in Å and degree).
Figure S1. Optimized structures of various H+Pym isomers calculated at the B3LYP-D3/aug-cc-pVTZ level.
Relative energies (E0) and bond lengths are given in kJ mol-1 and Å, respectively.
Figure S2. Linear IR spectra of neutral Pym and various H+Pym isomers obtained at the B3LYP-D3/aug-cc-
pVTZ level.
Figure S3. NBO atomic charge distributions (in e) of W, W2, Pym, H+Pym, and selected H+Pym-Ln clusters
with L=W (n=1-4) and L=N2 (n=1) obtained at the B3LYP-D3/aug-cc-pVTZ level.
Figure S4. Orbital interaction energies (E(2) in kJ mol-1) between the σ* orbital of the X-H donor bond and the
lone pair of L involved in XH…L and W…W moiety (X=N/O, and L=W/N2) of H+Pym-Ln and W2 obtained from
the NBO analysis at the B3LYP-D3/aug-cc-pVTZ level.
Figure S5. NCI plots of H+Pym-Ln and W2 calculated at the B3LYP-D3/aug-cc-pVTZ level.
Figure S6. Optimized structures of various H+Pym-N2 isomers calculated at the B3LYP-D3/aug-cc-pVTZ
level. Binding energies (D0) and bond lengths are given in cm-1 and Å, respectively. Numbers in parentheses
correspond to relative energies (E0).
Figure S7. Linear IR spectra of H+Pym(C5)-N2(CH) and H+Pym(C5)-N2(π) obtained at the B3LYP-D3/aug-cc-
pVTZ level.
Figure S8. Optimized structure and IR spectrum of Pym-W calculated at the B3LYP-D3/aug-cc-pVTZ level.
Binding energies (D0) and bond lengths are given in cm-1 and Å, respectively.
Electronic Supplementary Material (ESI) for Physical Chemistry Chemical Physics.This journal is © the Owner Societies 2020
2
Table S1. Experimental and theoretical (calculated at B3LYP-D3/aug-cc-pVTZ level) data of structural
parameters of neutral Pym and respective changes upon protonation (in Å and degree).
a From electron diffraction data (L. Fernholt and C. Romming, C., Acta Chem. Scand. 1978, 32, 271-273). Numbers in
parentheses are from a recent and more reliable microwave study combined with CCSD(T) corrections (Z.N. Heim et al.,
J. Chem. Phys. 2020, 152, 104303). The latter values agree much better with our B3LYP-D3 data.
structural parameters Pym H+Pym
expa calc Calc
rN1C2 1.340 (1.33333(38)) 1.3327 1.3512
rN3C2 1.340 (1.33333(38)) 1.3327 1.3080
rN3C4 1.340 1.3335 1.3379
rN1C6 1.340 1.3335 1.3488
rC4C5 1.393 (1.38675(45)) 1.3878 1.3959
rC5C6 1.393 1.3878 1.3747
rC2H7 1.099 (1.08165(39)) 1.0837 1.0824
rC4H8 1.099 (1.08224(30)) 1.0841 1.0830
rC6H10 1.099 (1.08224(30)) 1.0841 1.0801
rC5H9 1.099 (1.07929(36)) 1.0804 1.0793
rN1H11 1.0148
< (N1C2N3) 127.6 126.9 122.2
< (C2N3C4) 115.5 116.1 117.9
< (N3C4C5) 122.3 122.2 122.7
< (C4C5C6) 116.8 116.7 117.4
< (N1C2H7) 116.2 (116.332(24)) 116.5 117.2
< (C5C4H8) 122.4 (121.261(38)) 121.2 121.0
< (C6C5H9) 121.6 (121.665(22)) 121.7 120.7
3
Figure S1
4
Figure S2
5
Figure S3
6
Figure S4
7
Figure S5
8
Figure S6
9
Figure S7
10
Figure S8
11
Optimized cartesian coordinates (in Å) and energies (in Hartree) of all relevant structures
Pym C 0.00000000 0.00000000 -1.30772900
N 0.00000000 1.19231900 -0.71242700
C 0.00000000 1.18110000 0.62104800
C 0.00000000 0.00000000 1.34975300
C 0.00000000 -1.18110000 0.62104800
N 0.00000000 -1.19231900 -0.71242700
H 0.00000000 2.14598500 1.11524000
H 0.00000000 0.00000000 -2.39140000
H 0.00000000 0.00000000 2.43018300
H 0.00000000 -2.14598500 1.11524000
Sum of electronic and zero-point Energies= -264.346942
Sum of electronic and thermal Energies= -264.342759
Sum of electronic and thermal Enthalpies= -264.341815
Sum of electronic and thermal Free Energies= -264.373636
H+Pym(N)
C -1.17217600 0.61288500 0.00000000
N -1.22742600 -0.69392200 0.00000000
C -0.07252900 -1.36941000 0.00000000
C 1.17187400 -0.73688000 0.00000000
C 1.18334800 0.63773400 0.00000000
N 0.00000000 1.28497600 0.00000000
H -0.14890700 -2.44966000 0.00000000
H -2.08049500 1.20156400 0.00000000
H 2.09483000 -1.29637900 0.00000000
H 2.07902500 1.24142900 0.00000000
H -0.01557000 2.29968300 0.00000000
Sum of electronic and zero-point Energies= -264.686185
Sum of electronic and thermal Energies= -264.681869
Sum of electronic and thermal Enthalpies= -264.680925
Sum of electronic and thermal Free Energies= -264.713659
H+Pym(C2)
C 0.00000000 0.00000000 -1.29947400
N 0.00000000 1.23496600 -0.64723400
C 0.00000000 1.22285300 0.65983400
C 0.00000000 0.00000000 1.36997600
C 0.00000000 -1.22285300 0.65983400
N 0.00000000 -1.23496600 -0.64723400
H 0.00000000 2.17277100 1.18128100
H 0.00000000 0.00000000 2.45388800
H 0.00000000 -2.17277100 1.18128100
H -0.82603000 0.00000000 -2.04809500
H 0.82603000 0.00000000 -2.04809500
Sum of electronic and zero-point Energies= -264.582235
12
Sum of electronic and thermal Energies= -264.577426
Sum of electronic and thermal Enthalpies= -264.576481
Sum of electronic and thermal Free Energies= -264.609481
H+Pym(C4)
C -1.19576400 0.63948400 0.00000000
N -0.05443200 1.40442200 0.00000000
C 1.12952400 0.82259100 0.00000000
C 1.22723400 -0.57526200 0.00000000
C 0.00000000 -1.32529700 0.00000000
N -1.23643200 -0.65912100 0.00000000
H 2.00531800 1.46011200 0.00000000
H -2.12815700 1.18949900 0.00000000
H 2.18387700 -1.08479800 0.00000000
H 0.00452200 -2.07550900 0.82491700
H 0.00452200 -2.07550900 -0.82491700
Sum of electronic and zero-point Energies= -264.577539
Sum of electronic and thermal Energies= -264.572517
Sum of electronic and thermal Enthalpies= -264.571573
Sum of electronic and thermal Free Energies= -264.605697
H+Pym(C5)
C 0.10504000 -1.33004600 0.00000000
N -0.05270200 -0.75301800 1.20887600
C -0.05270200 0.54833900 1.22680700
C 0.06857300 1.35523500 0.00000000
C -0.05270200 0.54833900 -1.22680700
N -0.05270200 -0.75301800 -1.20887600
H -0.15959300 1.04185800 2.18854000
H 0.37908800 -2.38038700 0.00000000
H -0.15959300 1.04185800 -2.18854000
H 0.98302900 1.97382400 0.00000000
H -0.71434100 2.13389800 0.00000000
Sum of electronic and zero-point Energies= -264.607915
Sum of electronic and thermal Energies= -264.602598
Sum of electronic and thermal Enthalpies= -264.601654
Sum of electronic and thermal Free Energies= -264.636623
H+Pym+-N2(H)
C 1.03096800 -0.78943700 0.00000000
N 0.85626100 -2.08691700 0.00000000
C -0.40009100 -2.54616300 0.00000000
C -1.51194600 -1.70261200 0.00000000
C -1.27727000 -0.34772100 0.00000000
N 0.00000000 0.08093000 0.00000000
H -0.51720300 -3.62272800 0.00000000
H 2.02937200 -0.37183400 0.00000000
H -2.51943900 -2.08945700 0.00000000
H -2.05133700 0.40559200 0.00000000
13
H 0.19667400 1.08305400 0.00000000
N 0.59249900 3.10541900 0.00000000
N 0.81009200 4.17356400 0.00000000
Sum of electronic and zero-point Energies= -374.258165
Sum of electronic and thermal Energies= -374.250066
Sum of electronic and thermal Enthalpies= -374.249122
Sum of electronic and thermal Free Energies= -374.293445
H+Pym+-N2(π)
C 0.73498200 -0.87305000 1.02434000
N 0.82414700 0.38426600 1.37305800
C 0.98198600 1.29150500 0.40336700
C 1.05268000 0.94834500 -0.94719300
C 0.95816300 -0.38496300 -1.26694800
N 0.80465400 -1.27112800 -0.26371400
H 1.05292500 2.32458800 0.72019300
H 0.60314600 -1.64268400 1.77358700
H 1.17718400 1.69324900 -1.71809800
H 0.99921300 -0.77614200 -2.27273100
H 0.72727100 -2.25991100 -0.47672100
N -2.20815600 -0.05786600 -0.10214100
N -3.26730200 0.19756900 -0.05115100
Sum of electronic and zero-point Energies= -374.255103
Sum of electronic and thermal Energies= -374.246757
Sum of electronic and thermal Enthalpies= -374.245813
Sum of electronic and thermal Free Energies= -374.290818
H+Pym+-N2(C4/C5)
C -2.24868800 -0.98153900 0.00000000
N -1.05591600 -1.51829400 0.00000000
C 0.00000000 -0.69591900 0.00000000
C -0.12527800 0.69418800 0.00000000
C -1.39699600 1.21495700 0.00000000
N -2.43767500 0.35621900 0.00000000
H 0.97676400 -1.16154300 0.00000000
H -3.13268500 -1.60609800 0.00000000
H 0.74117500 1.33648000 0.00000000
H -1.62580500 2.27052400 0.00000000
H -3.38552900 0.71824900 0.00000000
N 3.27716200 0.34570100 0.00000000
N 4.36669300 0.39526900 0.00000000
Sum of electronic and zero-point Energies= -374.254399
Sum of electronic and thermal Energies= -374.245977
Sum of electronic and thermal Enthalpies= -374.245033
Sum of electronic and thermal Free Energies= -374.291111
H+Pym+(C5)-N2(π)
14
C 0.64135300 1.34297100 0.00092200
N 0.88251900 0.79183200 1.20642400
C 1.00488100 -0.50251300 1.22447700
C 0.92990400 -1.31847300 -0.00081300
C 1.00543300 -0.50085900 -1.22496600
N 0.88304900 0.79345900 -1.20521500
H 1.17795100 -0.98237700 2.18323600
H 0.22192400 2.34410500 0.00150600
H 1.17895500 -0.97942300 -2.18429200
H 0.03180400 -1.96043800 -0.00144600
H 1.74137800 -2.06400400 -0.00113600
N -2.18614400 -0.16881700 -0.00041600
N -3.27105700 -0.05713400 -0.00016400
Sum of electronic and zero-point Energies= -374.177798
Sum of electronic and thermal Energies= -374.168524
Sum of electronic and thermal Enthalpies= -374.167580
Sum of electronic and thermal Free Energies= -374.214405
H+Pym+(C5)-N2(CH)
C -0.83567400 -2.26074400 0.00000000
N -0.74607300 -1.67601700 1.21357500
C -0.74607300 -0.37242400 1.22615800
C -0.79148300 0.43122900 0.00000000
C -0.74607300 -0.37242400 -1.22615800
N -0.74607300 -1.67601700 -1.21357500
H -0.68921100 0.12259200 2.19141200
H -0.99564900 -3.33393600 0.00000000
H -0.68921100 0.12259200 -2.19141200
H 0.08880300 1.11044700 0.00000000
H -1.60925900 1.16984500 0.00000000
N 1.93548400 2.49626300 0.00000000
N 2.78671100 3.17786200 0.00000000
Sum of electronic and zero-point Energies= -374.177294
Sum of electronic and thermal Energies= -374.167903
Sum of electronic and thermal Enthalpies= -374.166959
Sum of electronic and thermal Free Energies= -374.215790
H+Pym+-W(H)
C 1.16012400 -0.17451000 0.00000000
N 1.21518900 -1.48468800 0.00000000
C 0.05641400 -2.15196500 0.00000000
C -1.18263000 -1.51127900 0.00000000
C -1.18084400 -0.13527100 0.00000000
N 0.00000000 0.50873100 0.00000000
H 0.12499300 -3.23266100 0.00000000
H 2.07208100 0.40777100 0.00000000
H -2.10879500 -2.06506600 0.00000000
H -2.07207700 0.47496600 0.00000000
H 0.02134300 1.55031400 0.00000000
15
O 0.02581400 3.23825000 0.00000000
H 0.06562000 3.81426100 0.77176200
H 0.06562000 3.81426100 -0.77176200
Sum of electronic and zero-point Energies= -341.157825
Sum of electronic and thermal Energies= -341.149952
Sum of electronic and thermal Enthalpies= -341.149007
Sum of electronic and thermal Free Energies= -341.190762
H+Pym+-W(C5/C6)
C 1.97105500 0.59505800 0.00000000
N 1.31495400 1.72522700 0.00000000
C -0.02418000 1.67100600 0.00000000
C -0.73026500 0.46983800 0.00000000
C 0.00000000 -0.69661900 0.00000000
N 1.34472600 -0.60317200 0.00000000
H -0.53969100 2.62320800 0.00000000
H 3.05326900 0.58768700 0.00000000
H -1.80799500 0.42014700 0.00000000
H -0.45659000 -1.67620600 0.00000000
H 1.90399100 -1.44929200 0.00000000
O -2.70801900 -1.99599400 0.00000000
H -3.20312700 -2.31383800 0.76303500
H -3.20312700 -2.31383800 -0.76303500
Sum of electronic and zero-point Energies= -341.146404
Sum of electronic and thermal Energies= -341.138330
Sum of electronic and thermal Enthalpies= -341.137386
Sum of electronic and thermal Free Energies= -341.179794
H+Pym+-W(π)
C 0.19879700 -0.16679200 1.25575300
N -0.26440700 -1.25884500 0.70417800
C -1.02240700 -1.12941700 -0.38887700
C -1.33352000 0.10831100 -0.95134300
C -0.83486200 1.22698300 -0.32926500
N -0.08413400 1.06017700 0.77547800
H -1.39167200 -2.04777800 -0.82795500
H 0.82949800 -0.21980400 2.13246100
H -1.94160600 0.19401200 -1.83849700
H -1.00685500 2.23897800 -0.66422200
H 0.31326500 1.86931300 1.23879400
O 2.25747700 -0.05421700 -0.74153500
H 2.88028800 0.48979500 -1.23570000
H 2.64901200 -0.93462800 -0.74780300
Sum of electronic and zero-point Energies= -341.145194
Sum of electronic and thermal Energies= -341.136946
Sum of electronic and thermal Enthalpies= -341.136002
Sum of electronic and thermal Free Energies= -341.179156
16
H+Pym+-W(C4/C5)
C -1.30169100 -1.58194000 0.00000000
N 0.00588800 -1.61238700 0.00000000
C 0.65811600 -0.44243200 0.00000000
C 0.00000000 0.78980500 0.00000000
C -1.37314100 0.77326400 0.00000000
N -1.99739100 -0.42421900 0.00000000
H 1.73970900 -0.47437600 0.00000000
H -1.87313600 -2.50110300 0.00000000
H 0.56422500 1.70974400 0.00000000
H -1.99678900 1.65499300 0.00000000
H -3.01090100 -0.46078200 0.00000000
O 2.95541000 1.65921300 0.00000000
H 3.48721300 1.91093700 0.76282200
H 3.48721300 1.91093700 -0.76282200
Sum of electronic and zero-point Energies= -341.144947
Sum of electronic and thermal Energies= -341.136822
Sum of electronic and thermal Enthalpies= -341.135877
Sum of electronic and thermal Free Energies= -341.178344
H+Pym+-W2(l1)
C 0.93842400 -1.14702600 0.19448500
N 2.20100000 -1.26285000 -0.14604700
C 2.87912400 -0.13585000 -0.38526700
C 2.29904500 1.12818500 -0.28659000
C 0.97162200 1.18516400 0.07404600
N 0.31384800 0.03780800 0.30922500
H 3.91896300 -0.25143400 -0.66441400
H 0.34963500 -2.03148600 0.39805900
H 2.86105700 2.02807200 -0.48320900
H 0.40975400 2.10112400 0.18396800
H -0.70756100 0.06460700 0.58714000
O -2.24461800 0.14980000 0.97831300
H -2.99849500 0.06240600 0.35120100
H -2.60823200 0.16885500 1.86839200
O -4.23260800 -0.08747100 -0.83696700
H -4.74170800 -0.89123900 -0.98619100
H -4.79883000 0.64291200 -1.10800000
Sum of electronic and zero-point Energies= -417.621436
Sum of electronic and thermal Energies= -417.610492
Sum of electronic and thermal Enthalpies= -417.609548
Sum of electronic and thermal Free Energies= -417.660224
H+Pym+-W2(l2)
C 0.21888000 -0.76196000 -0.02676600
N 1.31842300 -1.47999000 -0.01244000
C 2.48217700 -0.82228200 0.00957400
C 2.56251300 0.56975600 0.01874200
17
C 1.37715700 1.26975900 0.00293400
N 0.22332300 0.58343600 -0.02088600
H 3.37757900 -1.43113500 0.02072800
H -0.75245800 -1.24109100 -0.04232200
H 3.51100500 1.08385000 0.03790100
H 1.30958000 2.34771900 0.00912000
H -0.70850000 1.07257600 -0.03147800
O -2.28362600 1.46613900 0.03349600
H -2.79843100 2.23928600 -0.21438100
H -2.86141100 0.67917600 -0.00474700
O -3.25407900 -1.09961200 0.01274400
H -3.71727200 -1.49287600 -0.73593800
H -3.69504100 -1.44549400 0.79756500
Sum of electronic and zero-point Energies= -417.620528
Sum of electronic and thermal Energies= -417.609842
Sum of electronic and thermal Enthalpies= -417.608898
Sum of electronic and thermal Free Energies= -417.657756
H+Pym+-W2(H-C5/C6)
C 0.24875300 -1.81633800 0.00000000
N 1.55752200 -1.75562800 0.00000000
C 2.11894600 -0.53968900 0.00000000
C 1.37188000 0.63563200 0.00000000
C 0.00000000 0.51338800 0.00000000
N -0.53496500 -0.72038700 0.00000000
H 3.20142400 -0.51395300 0.00000000
H -0.25137500 -2.77570400 0.00000000
H 1.81982300 1.61679500 0.00000000
H -0.66623400 1.36356600 0.00000000
H -1.56661800 -0.83946400 0.00000000
O 0.16465600 3.55437400 0.00000000
H 0.13287400 4.14160500 0.76294500
H 0.13287400 4.14160500 -0.76294500
O -3.25743100 -1.08161600 0.00000000
H -3.82796900 -1.17118400 0.77132000
H -3.82796900 -1.17118400 -0.77132000
Sum of electronic and zero-point Energies= -417.616167
Sum of electronic and thermal Energies= -417.604397
Sum of electronic and thermal Enthalpies= -417.603453
Sum of electronic and thermal Free Energies= -417.655187
H+Pym+-W3(b1)
C -0.85093000 1.57612600 0.00000000
N -0.69653200 2.88134200 0.00000000
C 0.55552600 3.34909400 0.00000000
C 1.67137500 2.51412400 0.00000000
C 1.44023500 1.15616600 0.00000000
N 0.17478200 0.71029200 0.00000000
H 0.66566900 4.42631300 0.00000000
18
H -1.84629600 1.15249400 0.00000000
H 2.67573000 2.90849000 0.00000000
H 2.21915300 0.40765400 0.00000000
H -0.01896400 -0.35468900 0.00000000
O -0.21528000 -1.84220000 0.00000000
H -0.40834300 -2.37504600 0.79737200
H -0.40834300 -2.37504600 -0.79737200
O -0.69653200 -3.20149900 2.33256200
H -1.56178600 -3.45755300 2.66805900
H -0.06663300 -3.81399200 2.72630700
O -0.69653200 -3.20149900 -2.33256200
H -1.56178600 -3.45755300 -2.66805900
H -0.06663300 -3.81399200 -2.72630700
Sum of electronic and zero-point Energies= -494.082395
Sum of electronic and thermal Energies= -494.067948
Sum of electronic and thermal Enthalpies= -494.067003
Sum of electronic and thermal Free Energies= -494.127659
H+Pym+-W3(b2)
C 1.20905300 0.86865300 0.09893500
N 2.51506700 0.97236700 0.21147600
C 3.22786100 -0.15542000 0.13183600
C 2.64285000 -1.40546500 -0.06315500
C 1.27052000 -1.44765300 -0.17333900
N 0.57750300 -0.30253700 -0.08795300
H 4.30164700 -0.05263000 0.22673600
H 0.58149400 1.74973000 0.15239000
H 3.23450300 -2.30553600 -0.12673800
H 0.70347000 -2.35415700 -0.32724800
H -0.49483200 -0.28650600 -0.17116300
O -1.99137300 -0.01839900 -0.34985400
H -2.76159100 -0.56772600 -0.09747700
H -2.19837400 0.92078500 -0.21033700
O -4.06681200 -1.68955500 0.25909300
H -4.52473400 -1.79634700 1.09902300
H -4.68736600 -1.97023900 -0.42160100
O -1.69781100 2.74016200 -0.02249300
H -1.99425600 3.25118400 0.73903500
H -1.86169700 3.30427700 -0.78690600
Sum of electronic and zero-point Energies= -494.081671
Sum of electronic and thermal Energies= -494.067663
Sum of electronic and thermal Enthalpies= -494.066718
Sum of electronic and thermal Free Energies= -494.124683
H+Pym+-W3(l1)
C 1.43363400 1.02640500 0.49170300
N 2.59248800 1.55374700 0.16839900
C 3.51056800 0.73892000 -0.36087400
19
C 3.27936100 -0.61886300 -0.57517700
C 2.04445200 -1.11102100 -0.21565500
N 1.14057300 -0.27248900 0.31540000
H 4.45996600 1.19011500 -0.62085900
H 0.65951100 1.64715300 0.92265100
H 4.03163500 -1.26237500 -1.00440000
H 1.74289400 -2.14180700 -0.33171200
H 0.17744800 -0.64220800 0.59650600
O -1.20707100 -1.24512500 0.92426000
H -1.50901800 -1.55554000 1.78225700
H -2.00830900 -1.07999200 0.35640100
O -3.22865600 -0.75256800 -0.68361100
H -3.92600000 -0.09123000 -0.49542400
H -3.64016600 -1.44924500 -1.20290200
O -5.12260100 1.16332400 -0.12896900
H -5.88562300 1.04058100 0.44503200
H -5.37522200 1.83804700 -0.76756200
Sum of electronic and zero-point Energies= -494.081293
Sum of electronic and thermal Energies= -494.067312
Sum of electronic and thermal Enthalpies= -494.066368
Sum of electronic and thermal Free Energies= -494.126187
H+Pym+-W3(l2)
C -0.53520900 0.64782000 -0.20694800
N -1.50870500 1.50911700 -0.00717100
C -2.73176800 1.01484300 0.20893200
C -3.00009500 -0.35281400 0.23166800
C -1.93998600 -1.20518700 0.01792400
N -0.72327000 -0.68296900 -0.20183100
H -3.52073300 1.73873800 0.37049400
H 0.47377200 1.00270000 -0.38061400
H -3.99344800 -0.73406200 0.41091400
H -2.01800000 -2.28262500 0.01651300
H 0.11788000 -1.31785800 -0.35905100
O 1.43417200 -2.16356400 -0.42405400
H 1.78933500 -2.67657800 -1.15548000
H 2.17751200 -1.67119200 0.00081300
O 3.10029000 -0.50091800 0.80450900
H 3.13308200 0.40585000 0.45227000
H 3.90275900 -0.65002100 1.31248700
O 2.60753100 2.00445600 -0.34980200
H 3.05439600 2.26094900 -1.16462900
H 2.61367600 2.79329600 0.20461300
Sum of electronic and zero-point Energies= -494.081140
Sum of electronic and thermal Energies= -494.067609
Sum of electronic and thermal Enthalpies= -494.066665
Sum of electronic and thermal Free Energies= -494.122943
H+Pym+-W4(r)
20
C -1.25951300 2.33688100 0.00000000
N -1.15525900 3.64804800 0.00000000
C 0.07812800 4.16214400 0.00000000
C 1.22440100 3.36969200 0.00000000
C 1.04353700 2.00388800 0.00000000
N -0.20288800 1.50943100 0.00000000
H 0.14807900 5.24274400 0.00000000
H -2.23785200 1.87506600 0.00000000
H 2.21319900 3.80154800 0.00000000
H 1.85186500 1.28692200 0.00000000
H -0.37274200 0.42409200 0.00000000
O -0.70350200 -1.00166900 0.00000000
H -0.49764000 -1.56535300 0.77819100
H -0.49764000 -1.56535300 -0.77819100
O 0.07812800 -2.80888500 1.87721800
H -0.32670600 -3.05238200 2.71493800
H 0.25290400 -3.63506000 1.39820700
O 0.07812800 -2.80888500 -1.87721800
H -0.32670600 -3.05238200 -2.71493800
H 0.25290400 -3.63506000 -1.39820700
O 0.65194900 -4.94075700 0.00000000
H 1.57026600 -5.23596900 0.00000000
H 0.12015800 -5.74522700 0.00000000
Sum of electronic and zero-point Energies= -570.542037
Sum of electronic and thermal Energies= -570.525842
Sum of electronic and thermal Enthalpies= -570.524897
Sum of electronic and thermal Free Energies= -570.588953
H+Pym+-W4(b1)
C 1.64131700 -0.62562800 -0.99607400
N 2.84540400 -1.11107800 -1.20666200
C 3.77823100 -0.84836600 -0.28636100
C 3.51686600 -0.09660800 0.85719000
C 2.23404000 0.38114000 1.01508400
N 1.31415300 0.10665900 0.07885700
H 4.76469300 -1.25404600 -0.47302900
H 0.85471300 -0.81412500 -1.71440600
H 4.28173600 0.10557600 1.59091000
H 1.90710300 0.97383600 1.85715700
H 0.28742700 0.48250100 0.19876600
O -1.04721700 0.99904900 0.45812800
H -1.40809000 1.79461000 0.02087300
H -1.78484000 0.38931700 0.70237600
O -1.87145600 3.32381500 -0.76606700
H -2.35519200 3.40369500 -1.59436500
H -2.08942800 4.10967000 -0.25434800
O -2.89377500 -0.78183600 1.18704800
H -3.53264000 -1.22714100 0.59636900
H -3.30248600 -0.74593400 2.05629100
O -4.63376400 -2.07407600 -0.53807400
21
H -5.50363100 -1.75106200 -0.79410000
H -4.68928400 -3.03481400 -0.56517100
Sum of electronic and zero-point Energies= -570.541108
Sum of electronic and thermal Energies= -570.523586
Sum of electronic and thermal Enthalpies= -570.522642
Sum of electronic and thermal Free Energies= -570.592384
H+Pym+-W4(b2)
C 1.21516800 -0.91637700 0.16543700
N 2.33041900 -1.58924300 -0.02445100
C 3.43837800 -0.88185800 -0.26406000
C 3.44854200 0.51079600 -0.31625200
C 2.24901100 1.15594800 -0.11006800
N 1.15039700 0.42501100 0.12605400
H 4.34719300 -1.45015800 -0.41823700
H 0.28543400 -1.43379500 0.36991900
H 4.35390800 1.06528600 -0.50867300
H 2.12994000 2.22961400 -0.12460700
H 0.18411500 0.88866900 0.29662400
O -1.21312300 1.31422500 0.65541000
H -1.74695600 2.01573600 0.23340000
H -1.74894900 0.50189900 0.75674700
O -2.55795400 3.43800400 -0.45784300
H -3.05566500 3.49119400 -1.27982800
H -2.91866300 4.12066200 0.11744900
O -2.01904900 -1.27178500 0.96757500
H -2.61140300 -1.75888300 0.35859600
H -2.26881700 -1.54995000 1.85439000
O -3.63090000 -2.62646500 -0.81690200
H -3.48026200 -3.54261900 -1.07163300
H -4.57397600 -2.47092200 -0.93162500
Sum of electronic and zero-point Energies= -570.541411
Sum of electronic and thermal Energies= -570.524168
Sum of electronic and thermal Enthalpies= -570.523224
Sum of electronic and thermal Free Energies= -570.590293
H+Pym+-W4(l)
C -0.66502100 0.49645300 -0.37042300
N -1.12675100 1.72646000 -0.28290900
C -2.40761200 1.87965000 0.06528100
C -3.25148200 0.80396200 0.33659300
C -2.71253000 -0.45828000 0.22938800
N -1.42527300 -0.58532000 -0.12775500
H -2.76927100 2.89831300 0.13052600
H 0.37095100 0.32323300 -0.64226500
H -4.28250200 0.94748000 0.62037100
H -3.25989300 -1.37047600 0.41736600
H -0.98735300 -1.55621000 -0.20704300
O -0.28042800 -2.94501300 -0.16067200
22
H -0.27331800 -3.62086400 -0.84442700
H 0.65045600 -2.81228500 0.15185500
O 2.07595100 -2.13023900 0.69434300
H 2.42708200 -1.37567900 0.17885000
H 2.81430300 -2.57176600 1.12201300
O 2.56393100 0.09349200 -0.83259300
H 3.01276600 -0.00310500 -1.67834900
H 2.96524300 0.87749000 -0.40146400
O 3.58794300 2.28837200 0.46014400
H 4.39314100 2.29300600 0.98779400
H 3.44325800 3.19927900 0.18461000
Sum of electronic and zero-point Energies= -570.541297
Sum of electronic and thermal Energies= -570.524604
Sum of electronic and thermal Enthalpies= -570.523660
Sum of electronic and thermal Free Energies= -570.588801
W
O 0.00000000 0.00000000 0.11698300
H 0.00000000 0.76357100 -0.46793200
H 0.00000000 -0.76357100 -0.46793200
Sum of electronic and zero-point Energies= -76.444969
Sum of electronic and thermal Energies= -76.442134
Sum of electronic and thermal Enthalpies= -76.441190
Sum of electronic and thermal Free Energies= -76.462611
W2
O -0.00046000 1.51528100 0.00000000
H -0.09745200 0.55058300 0.00000000
H -0.89658900 1.86167300 0.00000000
O -0.00046000 -1.39401700 0.00000000
H 0.50070000 -1.69118200 0.76617600
H 0.50070000 -1.69118200 -0.76617600
Sum of electronic and zero-point Energies= -152.894964
Sum of electronic and thermal Energies= -152.889139
Sum of electronic and thermal Enthalpies= -152.888195
Sum of electronic and thermal Free Energies= -152.921231
W3
O -1.33503600 -0.90482900 -0.09589900
H -1.21731700 0.06147900 -0.02262000
O -0.12109400 1.60263300 0.11221300
H 0.66139700 1.02168800 0.05785900
H -0.04406700 2.22297300 -0.61772100
O 1.45727700 -0.69154800 -0.08757800
H 0.57180300 -1.09900700 -0.05049600
H -1.95565900 -1.15349400 0.59394000
H 1.97467100 -1.10368800 0.60915400
23
Sum of electronic and zero-point Energies= -229.352769
Sum of electronic and thermal Energies= -229.345314
Sum of electronic and thermal Enthalpies= -229.344370
Sum of electronic and thermal Free Energies= -229.382124
W4
O -1.36671600 -1.36671600 -0.00272400
H -0.39208700 -1.50195000 0.00951700
O 1.36671600 1.36671600 -0.00272400
H 0.39208700 1.50195000 0.00951700
O -1.36671600 1.36671600 0.00272400
H -1.50195000 0.39208700 -0.00951700
O 1.36671600 -1.36671600 0.00272400
H 1.50195000 -0.39208700 -0.00951700
H 1.86068400 -1.69622500 0.75812000
H 1.69622500 1.86068400 -0.75812000
H -1.69622500 -1.86068400 -0.75812000
H -1.86068400 1.69622500 0.75812000
Sum of electronic and zero-point Energies= -305.813843
Sum of electronic and thermal Energies= -305.804211
Sum of electronic and thermal Enthalpies= -305.803267
Sum of electronic and thermal Free Energies= -305.846308
Pym-W
C -0.43138700 -1.26067200 0.00592000
N -1.73961300 -1.01978900 -0.01728300
C -2.10083300 0.26434900 -0.01684100
C -1.17193900 1.29558800 0.00648600
C 0.16520600 0.93037600 0.03131100
N 0.54190000 -0.35075600 0.03163500
H -3.16515800 0.46835600 -0.03606100
H -0.12522300 -2.29985000 0.00340700
H -1.47487000 2.33232800 0.00523500
H 0.96200900 1.66416500 0.05048900
O 3.37453700 0.09566900 -0.09459500
H 2.48636600 -0.29847200 -0.01896700
H 3.93830100 -0.41591500 0.49094300
Sum of electronic and zero-point Energies= -340.800066
Sum of electronic and thermal Energies= -340.792353
Sum of electronic and thermal Enthalpies= -340.791408
Sum of electronic and thermal Free Energies= -340.833916
N2
N 0.00000000 0.00000000 0.54558200
N 0.00000000 0.00000000 -0.54558200
Sum of electronic and zero-point Energies= -109.565010
24
Sum of electronic and thermal Energies= -109.562650
Sum of electronic and thermal Enthalpies= -109.561706
Sum of electronic and thermal Free Energies= -109.583435