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Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
000021 B6.Cg-Ay/J T20 T19 A20 T13 C19 G19 A18 G12 T20 C19 A20 T19 T20 G19 A20 T17 T19
000031 BXD24b/TyJ T1 C1 C1 T1 T1 G1 A1 T0 T1 A1 A1 T1 T1 G1 A1 C1 C1
000049 C57BL/6J-KitW-v/J T18 T17 A18 T12 C18 G18 A18 G11 T18 C18 A18 T17 T17 G17 A18 T15 T18
000051 C57BL/6J-Aw-J/J T126 T121 A120 T113 C125 G119 A125 G101 T121 C125 A124 T124 T126 G126 A125 T124 T124
000058 B6(Cg)-Tyrc-2J/J T12 T12 A12 T12 C11 G12 A12 G8 T12 C12 A12 T12 T12 G12 A12 T9 T12
000140 A.BY-H2bcH2-T18f/SnJ T4 C4 C4 C4 T4 T4 A4 T4 T4 A4 A4 C4 G4 G4 A4 T4 C4
000198 C3FeLe.B6-a/J T4 C4 C4 C0 T4 T3 A4 T4 G1 A4 A4 C4 T4 G4 C4 C3 C0
000231 B6C3Fe a/a-Csf1op/J T14 C2.C/T4A2,A/C2,
C5C4,C/T2 C2,T2 G7,G/T1 A15
G4,G/T3,
T1
G6,(G/T
or T)8
A5,A/C5,
C2A15
C3,C/T4,
T4T14 G15
A4,A/C4,
C1C1,T3
C2,C/T4,
T6
000293 CHMU/LeJ T2 T2 A2 T2 C2 G2 A2 T2 A2 A2 T2 G2 G2 C2 C2 T2
000305 B6.Cg-Fbn1Tsk+/+Pldnpa/J T6 T6 A6 T0 C6 G6 A6 G0 T6 C6 A6 T6 T6 G6 A6 T6 T6
000383 B6.C-TyrcH1bHbbd/ByJ T54 T53 A54 T52 C53 G54 A54 G48 T54 C54 A55 T55 T55 G54 A55 T55 T56
000406 B6.PL-Thy1a/CyJ T133 T132 A130 T120 C132 G131 A134 G110 T135 C134 A134 T133 T133 G133 C134 T132 T131
000438 C3.SW-H2b/SnJ T106 C106 C105 C101 T105 T103 A105 T96 G90 A106 A104 C105 T106 G107 C107 C103 C106
Section 1 - Page 1 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
000457 B10.RIII-H2rH2-T18b/(71NS)SnJ T112 T106 A110 T95 C100 G102 A111 G90 T113 C110 A112 T109 T111 G113 C110 T111 T111
000458 B10.PL-H2uH2-T18a/(73NS)SnJ T105 T100 A101 T95 C102 G94 A105 G94 T106 C104 A105 T105 T105 G105 C100 T102 T105
000461 B10.D2-Hc0H2dH2-T18c/oSnJ T67 T64 A65 T61 C66 G63 A66 G61 T67 C67 A67 T66 T67 G65 C67 T65 T67
000463 B10.D2-Hc1H2dH2-T18c/nSnJ T95 T96 A93 T89 C96 G90 A96 G74 T97 C95 A97 T97 T99 G97 C96 T96 T95
000465 B10.BR-H2kH2-T18a/SgSnJ T90 T88 A89 T72 C89 G91 A92 G76 T92 C91 A92 T91 T93 G93 C93 T90 T89
000466 B10.AKM-H2mH2-T18a/SnJ T104 T103 A100 T84 C91 G88 A104 G64 T103 C101 A103 T102 T103 G104 C104 T97 T104
000467 B10.A-H2i5H2-T18a/(5R)SgSnJ T46 T40 A38 T29 C46 G47 A47 G31 T46 C47 A47 T47 T45 G46 C46 T42 T47
000468 B10.A-H2h2/(2R)SgSnJ T93 T93 A93 T75 C75 G75 A94 G67 T94 C92 A93 T91 T92 G93 C93 T89 T90
000469 B10.A-H2aH2-T18a/SgSnJ T108 T109 A109 T106 C107 G100 A109 G94 T108 C109 A109 T108 T110 G109 C108 T105 T108
000470 AK.M-H2mH2-T18a/nSnJ T1 T1 C1 C1 T1 G1 A1 T1 T1 A1 G1 C1 G1 G1 C1 C1 C1
000471 A.SW-H2sH2-T18b/SnJ T70 C67 C68 C63 T70 T64 A70 T59 T70 A69 A70 C70 G70 G69 A68 T66 C66
000476 C57BL/10ScSnJ T204 T198 A200 T178 C198 G200 A201 G164 T204 C205 A200 T198 T203 G203 C202 T195 T203
000480 C3.MRL-Faslpr/J T4 C4 C4 C0 T4 T4 A4 T3 G3 A4 A4 C4 T4 G4 C4 C4 C0
Section 1 - Page 2 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
000482 B6.MRL-Faslpr/J T308 T288 A292 T197 C286 G298 A297 G211 T313 C303 A283 T300 T312 G308 A307 T292 T299
000483 B6.SB-Yaa/J T2 T2 A1 T2 C2 G2 A2 G2 T2 C2 A2 T2 T2 G1 A2 T2 T2
000485 MRL/MpJ-Faslpr/J A218 T204 C221 C188 T215 T206 A223 T173 G199 A218 A223 C217 T222 G220 C220 C215 C217
000486 MRL/MpJ A131 T131 C132 C120 T131 T118 A134 T113 G127 A131 A134 C132 T132 G134 C130 C131 C130
000501 B6CBACa Aw-J/A-Aifm1Hq/J T7 T7 A/C5,C1 C/T3 C/T6 G1,G/T3 A7 G/T5,T1(G/T
or T)7 A1,A/C5 A7 C/T5,T1 G/T7 G7 A7 C/T7 C/T3
000533 C57BL/6J-Ghrhrlit/J T16 T18 A15 T7 C15 G17 A18 G5 T18 C17 A18 T17 T15 G18 A18 T12 T18
000574 CBA-Pdss2kd/J T1 T1 C1 C1 T1 T1 A1 T1 G1 A1 A1 C1 G1 G1 A1 C1 C1
000629 C57BL/6J-Lystbg-J/J T106 T102 A104 T104 C107 G104 A108 G73 T110 C109 A108 T108 T108 G109 A109 T107 T107
000632 B6.V-Lepob/J T456 T375 A418 T307 C425 G403 A442 G249 T463 C428 A462 T424 T445 G415 A425 T377 T459
000635 C3H/HeOuJ T122 C121 C121 C116 T122 T113 A121 T111 G114 A123 A123 C123 T120 G121 C120 C117 C120
000642 BKS.Cg-m+/+Leprdb/J T329 T300 A306 T254 C314 T295 G320 G215 T330 A319 G322 T317 T324 G321 C329 C303 T324
000645 A/HeJ T99 C96 C98 C91 T97 T92 A97 T84 T97 A98 A98 C97 G99 G96 A98 T95 C96
000646 A/J T256 C250 C255 C230 T245 T244 A256 T218 T253 A249 A256 C254 G255 G254 A255 T250 C254
Section 1 - Page 3 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
000647 A/WySnJ T137 C136 C135 C112 T134 T121 A135 T130 T137 A133 A137 C136 G133 G137 A137 T131 C137
000648 AKR/J T150 T146 C147 C128 T149 G136 A148 T113 T150 A143 G149 C147 G146 G150 C150 C144 C146
000651 BALB/cJ A375 T362 A371 T320 T361 G365 A378 T301 G320 A371 A388 C379 G388 G387 C377 C364 C358
000653 BUB/BnJ A118 C120 A118 T101 T119 G107 A120 T93 G95 A116 G119 C120 T119 C119 C120 T117 C118
000654 CBA/CaJ T97 T96 C99 C79 T87 T79 A97 T73 G75 A97 A100 C98 G96 G100 A98 C94 C99
000655 CBA/CaH-T(14;15)6Ca/J T42 T40 C42 C37 T41 T37 A41 T33 G33 A42 A42 C41 G42 G41 A39 C41 C42
000656 CBA/J T323 T281 C313 C237 T295 T265 A322 T217 G269 A321 G322 C323 T318 G318 A319 C298 C318
000657 CE/J A30 C29 C30 C30 T30 G29 A30 T30 T30 A30 G30 C30 G30 G30 C30 C29 C30
000658 C3HeB/FeJ T64 C64 C63 C45 T59 T58 A62 T51 G58 A63 A64 C65 T63 G64 C65 C65 C60
000659 C3H/HeJ T259 C258 C258 C213 T236 T238 A256 T196 G213 A253 A262 C259 T258 G259 C263 C259 C260
000661 C3H/HeSnJ T63 C64 C65 C63 T64 T64 A62 T55 G56 A64 A65 C64 T65 G65 C65 C63 C63
000662 C57BLKS/J T83 T79 A83 T79 C82 T75 G80 G77 T84 A83 G83 T82 T83 G83 C84 C82 T81
000664 C57BL/6J T1251 T1076 A1161 T929 C1179 G1138 A1244 G786 T1276 C1208 A1278 T1188 T1247 G1231 A1205 T1129 T1192
Section 1 - Page 4 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
000665 C57BL/10J T136 T127 A136 T108 C132 G128 A135 G110 T134 C133 A135 T135 T134 G133 C135 T128 T126
000666 C57BL/10SnJ T111 T108 A111 T108 C111 G108 A113 G89 T113 C111 A110 T109 T113 G113 C113 T112 T113
000667 C57BR/cdJ T102 C101 A100 T86 C92 G79 A102 T75 T101 A99 G102 T100 T101 G100 A102 T99 C101
000668 C57L/J T119 C117 A116 T106 C116 G116 A118 T103 T116 A117 G118 T116 T117 G116 A118 T106 C116
000669 C58/J T98 C95 C98 T90 C96 G85 A99 G73 T98 C98 G99 T97 T99 G98 C99 C97 C99
000670 DBA/1J T125 C121 C124 C101 T111 T109 G122 T91 G106 A124 G123 C124 T124 G125 A122 C121 C121
000671 DBA/2J T364 C336 C357 C248 T328 T324 G358 T247 G300 A353 A368 C364 T364 G366 A355 C327 C330
000673 HRS/J A27 C27 C27 T20 C26 G26 A27 T27 G20 A27 G27 C27 G26 G26 C27 C27 C27
000674 I/LnJ T89 C88 C89 C76 T89 T78 A90 T78 G80 C89 G90 C88 G89 G89 A89 T86 C88
000676 LP/J T101 C98 C103 C86 T98 G100 A101 T83 G89 C102 A103 T101 G101 G103 C101 C100 C103
000677 MA/MyJ A4 T4 C4 C4 T4 G4 A4 T0 T4 C4 G4 T4 T4 G4 C4 C4 C4
000679 P/J T15 T15 C14 T15 T15 G14 G14 T15 G10 C15 G15 C15 G15 G15 C15 T15 C15
000680 PL/J A104 C104 C105 C82 T101 T93 A105 T105 T104 A103 A105 C105 G102 G104 C105 C103 C100
Section 1 - Page 5 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
000682 RF/J T91 C92 C93 C62 T72 G86 A93 T68 T88 A90 G92 C93 G93 G91 C90 C93 C89
000683 RIIIS/J A110 C108 C109 C103 T109 T103 A110 G82 G95 A111 G112 C109 T112 G112 C112 C112 C105
000684 NZB/BlNJ T150 C148 C149 C133 T150 G134 A150 T135 T149 C149 G151 T145 T151 G148 A144 C147 C141
000686 SJL/J A186 C186 A183 C180 T186 G187 A186 T155 T187 A186 G187 C187 G185 G187 C186 T186 C188
000687 SM/J T111 C109 C111 C100 T110 T105 A109 T89 T113 A112 G109 C109 G108 G113 A109 C109 C112
000689 SWR/J A83 C82 C81 C75 T80 G80 A83 T73 T83 A80 G82 C82 T81 G82 C82 C80 C83
000690 129P3/J T135 C140 C132 C123 T136 G134 A141 T113 G121 A137 A141 T138 T140 G141 A141 C130 C130
000691 129X1/SvJ T133 C129 C128 C102 T111 G113 A134 T90 G113 A134 A135 C130 G126 G135 A131 C125 C125
000692 WB/ReJ KitW/J T95 T94 C96 T77 C95 T87 A96 G78 G76 C94 G94 T93 T95 G95 C95 C94 C93
000693 WC/ReJ KitlSl/J T65 T64 C63 T62 C63 T58 A64 G44 G54 A65 G65 T65 T65 G62 C63 C62 C65
000697 B6.Cg-m+/+Leprdb/J T217 T211 A202 T165 C211 G213 A220 G189 T219 C217 A217 T217 T216 G219 A220 T209 T219
000711 CByJ.Cg-Foxn1nu/J A24 T24 A23 T23 T18 G24 A25 T11 T24 A24 A24 C23 G24 G23 C24 C21 C24
000726 RBF/DnJ A153 C149 A146 C121 T149 G132 A153 T129 G128 A150 A153 C150 T148 G151 C153 C146 C152
Section 1 - Page 6 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
000740 BXSB/MpJ T121 C121 C123 T110 T120 G112 A122 T96 T121 A120 A123 T123 T122 G122 C122 C121 T123
000811 C57BL/6J-Ptpn6me-v/J T13 T12 A13 T12 C12 G13 A13 G6 T13 C12 A13 T12 T13 G13 A12 T10 T13
000819 B6.Cg-Foxn1nu/J T11 T11 A12 T12 C12 G11 A12 G6 T12 C11 A12 T11 T12 G12 A12 T10 T12
000928 CAST/EiJ A123 C123 C124 C104 T123 G121 G119 G90 T125 C123 G122 C122 G126 C122 C122 T6 C122
001011 CBA/CaHN-Btkxid/J T128 T128 C128 C105 T99 T107 A126 T87 G89 A124 A129 C125 G128 G127 A129 C123 C130
001021 B6Smn.C3-Faslgld/J T141 T137 A139 C111 C140 G137 A141 G115 T140 C138 A141 T136 T141 G140 A141 T135 T139
001022 B6C3FeF1/J a/a T3 C/T3 A/C4 C/T0 C/T4 G/T4 A4 G/T3 T4 A/C4 A4 C/T4 T4 G4 A/C4 C/T4 C/T0
001026 BALB/cByJ A453 T442 A448 T356 T439 G418 A455 T449 T456 A448 A461 C454 G448 G455 C459 C422 C424
001045 SI/Col Tyrp1bDnahc11iv/J T38 C38 C37 C38 C38 T35 A38 G37 T36 C38 A38 T37 T37 G36 C38 C38 C37
001058 NZW/LacJ T120 C119 C120 C97 T109 G107 A121 T104 T121 C119 G120 C120 T119 G120 A121 T118 C118
001060 B6.C-H2bm1/ByJ T115 T113 A114 T93 C104 G102 A116 G89 T117 C112 A115 T112 T113 G115 A114 T109 T109
001131 C3SnSmn.CB17-Prkdcscid/J T77 C76 C75 C60 T78 T73 A75 T62 G69 A77 A77 C77 T78 G79 C77 C77 C75
001137 129P1/ReJ T64 C63 C64 C60 T62 G64 A65 T53 G53 A65 A65 T65 T63 G65 A64 C64 C63
Section 1 - Page 7 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
001139 C57BL/6ByJ T92 T93 A92 T78 C92 G88 A91 G61 T95 C93 A94 T91 T94 G93 A94 T89 T87
001140 DBA/1LacJ T148 C145 C1149 C128 T143 T133 G145 T113 G119 A150 G146 C148 T148 G147 A146 C140 C143
001143 CBA/CaGnLeJ T4 T3 C4 C0 T4 T4 A4 T2 G4 A4 A4 C4 G4 G4 A3 C4 C0
001145 WSB/EiJ A1 C1 A1 C1 T1 G1 A1 G0 T1 A1 A1 C1 G1 G1 C1 T1 C1
001146 SPRET/EiJ A0 C1 A1 C1 T0 G1 G1 T1 G1 C1 A1 C1 G1 C1 C1 T1 C1
001162 B6(C)-H2-Ab1bm12/KhEgJ T129 T127 A127 T106 C128 G128 A127 G104 T129 C127 A126 T130 T128 G129 A127 T128 T126
001201 B6CBACaF1 Aw-J/A T6 T6 A/C3 C/T2 C/T6 G/T4 A6 G/T6(G/T
or T)6 A/C5 A6 C/T6 G/T6 G6 A6 C/T6 C/T2
001303 NOD.CB17-Prkdcscid/J A378 T359 C373 C276 T362 G348 A378 T263 T379 A362 G378 C375 T377 G379 C378 C336 C370
001317 B6.Cg- IghaThy1aGpi1a/J T97 T99 A94 T85 C96 G99 A96 G75 T100 C98 A100 T99 T100 G97 A99 T93 T100
001428 C3Fe.SWV-Mbpshi/J T3 C4 C4 C0 T4 T4 A4 T4 G3 A4 A4 C4 T4 G4 C4 C4 C0
001591 RHJ/LeJ A65 C64 A66 T61 T66 G64 A67 T57 T66 A66 A65 C64 G66 G67 A66 C66 C64
001626 NOD.NON-H2nb1/LtJ A49 T48 C49 C45 T47 G45 A48 T33 T49 A49 G49 C47 T49 G49 C46 C49 C49
001627 NON.NOD-H2g7/LtJ A37 C37 C37 C35 T33 T32 A36 T26 T36 A37 A37 C37 T36 G37 C37 C36 C37
Section 1 - Page 8 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
001692 BXA1/PgnJ T1 C1 A1 C1 T1 G1 A1 G1 T1 C1 A1 T1 G1 G1 A1 T1 T1
001800 FVB/NJ T171 C167 C169 T129 T168 G162 A170 T146 G154 A168 G170 C168 T171 C171 A170 T166 C149
001801 C57BL/10ScSn-Dmdmdx/J T125 T120 A122 T118 C123 G113 A124 G105 T124 C123 A125 T125 T125 G125 C124 T121 T120
001802 CByJ.RBF-Rb(8.12)5Bnr/J A90 T90 A85 T81 T90 G81 A91 T88 T64 A89 A90 C89 G90 G90 C89 C90 C89
001803 CBySmn.CB17-Prkdcscid/J A110 T110 A109 T99 T99 G103 A111 T96 T111 A110 A111 C110 G109 G110 C111 C106 C109
001913 B6.CB17-Prkdcscid/SzJ T117 T108 A112 T99 C113 G107 A116 G96 T117 C115 A117 T116 T113 G116 A114 T112 T114
001925 BXSB.B6-Yaa+/MobJ T3 C3 C3 T3 T3 G3 A3 T3 T3 A3 A3 T3 T3 G3 C3 C3 T3
001927 C57BL/6-Tg(APOA1)1Rub/J T18 T12 A15 T9 C18 G18 A18 G10 T18 C18 A18 T12 T18 G18 A15 T18 T18
001952 C.B10-H2b/LilMcdJ A52 T51 A52 T47 T52 G52 A52 T44 T52 A51 A51 C52 G51 G52 C52 C52 C49
001953 B10.S-H2s/SgMcdJ T65 T56 A64 T50 C63 G60 A65 G51 T65 C64 A64 T62 T65 G64 C63 T63 C62
001976 NOD/ShiLtJ A163 T145 C161 C135 T156 G159 A162 T130 T163 A158 G160 C161 T162 G163 C163 C161 C160
002014 B6.SJL-PtprcaPepcb/BoyJ T112 T110 A110 T87 C115 G110 A118 G78 T118 C117 A116 T113 T114 G116 A114 T113 T112
002019 NU/J A121 C120 C119 T106 T120 G114 A123 T104 G107 A120 A121 C123 G120 G122 C121 T119 C115
Section 1 - Page 9 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
002020 C57BL/6J-ApcMin/J T15 T13 A14 T4 C11 G12 A13 G3 T16 C14 A14 T13 T15 G13 A14 T15 T13
002024 B10.D1-H2q/SgJ T57 T56 A55 T53 C57 G55 A57 G53 T57 C56 A57 T55 T57 G57 C57 T56 T56
002032 NOD.SW-H2q/J A72 T72 C74 C64 T73 G66 A73 T63 T74 A74 G74 C74 T74 G73 C74 C72 C71
002050 NOR/LtJ A52 T52 C53 C47 T53 G52 A52 T47 T52 A53 G52 C52 T52 G52 C53 C52 C52
002052 B6.129P2-Apoetm1Unc/J T82 T59 A68 T42 C67 G67 A77 G35 T83 C72 A82 T75 T79 G79 A76 T62 T56
002065 129T2/SvEmsJ T106 C98 C106 C86 T104 G99 A106 T75 G87 A103 A105 T105 T105 G104 A105 C102 C105
002073 B6;129S-Gt(ROSA)26Sor/J T10 T10 A10 C10 C10 G10 A10 T10 T10 C10 A9 T10 T10 G10 A10 C7,T3 T10
002087 B6.129P2-B2mtm1Unc/J T5 T1 A5 T3 C5 G3 A5 G1 T5 C5 A5 T5 T4 G5 A5 T4 T4
002096 B6;129S7-Rag1tm1Mom/J T10 C9 A10 T10 C10 G10 A10 G10 T10 C10 A10 T10 T10 G10 A10 C10 C10
002101 B6.129S2-Trp53tm1Tyj/J T16 T16 A16 T16 C16 G16 A16 G10 T15 C16 A15 T16 T16 G16 A16 T16 T16
002102 B6.129S2-Rb1tm1Tyj/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 C/T1
002105 NZO/HlLtJ T5 C4 C4 C0 T5 G5 A5 T5 T5 A4 A5 C5 T4 G5 C5 T4 C0
002106 KK/HlJ T165 C167 C167 T154 T164 G150 G164 T120 T168 A164 G167 T168 G166 G167 A168 T167 C158
Section 1 - Page 10 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
002116 B6.129S2-Tcratm1Mom/J T13 T12 A13 T10 C13 G12 A13 G10 T14 C13 A13 T13 T13 G12 A13 T11 T13
002118 B6.129P2-Tcrbtm1Mom/J T2 T2 A1 T2 C2 G2 A2 G2 T2 C2 A2 T2 T2 G2 A2 T2 T2
002120 B6.129P2-Tcrdtm1Mom/J T6 T6 A5 T6 C6 G6 A6 G4 T6 C6 A6 T6 T6 G6 A6 T6 T6
002192 B6.129S7-Gt(ROSA)26Sor/J T15 T11 A16 T11 C11 G14 A16 G7 T16 C15 A16 T15 T16 G16 A13 T14 T16
002207 B6.129S7-Ldlrtm1Her/J T6 T6 A6 T2 C6 G6 A6 G6 T6 C6 A6 T6 T6 G6 A6 T6 T6
002213 B6.129S4-Ngfrtm1Jae/J T8 T8 A7 T7 C8 G7 A8 G4 T8 C8 A8 T8 T8 G9 A9 T8 T8
002216 B6.129S7-Rag1tm1Mom/J T13 T13 A13 T12 C13 G13 A13 G6 T13 C13 A13 T13 T13 G13 A13 T11 T13
002251 B6.129P2-Il10tm1Cgn/J T4 C4 A4 T4 C4 G4 A4 G0 T4 C4 A4 T4 T4 G4 A4 T4 T4
002253 B6.129P2-Il4tm1Cgn/J T12 T12 A12 T11 C12 G12 A12 G12 T12 C12 A12 T12 T12 G12 A12 T12 T12
002282 BTBR T+tf/J T16 C16 C16 C13 T15 G14 A16 G12 G12 A15 A16 T16 G16 G14 C15 T11 C15
002286 C.129S7(B6)-Ifngtm1Ts/J A8 T8 A8 T8 T8 G8 A8 T8 T8 A7 A8 C8 G8 G8 C8 C8 C8
002287 B6.129S7-Ifngtm1Ts/J T10 T11 A11 T11 C11 G11 A11 G6 T11 C11 A11 T11 T11 G11 A11 T11 T11
002288 B6.129S2-Igh-6tm1Cgn/J T15 T15 A13 T13 C15 G15 A15 G9 T14 C15 A13 T14 T15 G15 A14 T14 C/T4,T11
Section 1 - Page 11 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
002292 129-Gt(ROSA)26Sor/J T1 C1 C1 C1 T1 G1 A1 T1 G1 A1 A1 T1 T1 G1 A1 C1 C1
002335 SKH2/J A24 T24 C24 C23 C24 G24 A24 T21 T24 C24 G24 C24 T24 G24 C24 C24 C23
002365 B6.129S6-Cybbtm1Din/J T15 T15 A16 T15 C16 G16 A16 G10 T16 C16 A16 T16 T16 G16 A16 T16 T16
002376 FVB/N-Tg(MMTVneu)202Mul/J T4 C4 C4 T4 T4 G4 A4 T4 G3 A4 G4 C4 T4 C4 A4 T4 C4
002379 B6Ros.Cg-Dmdmdx-5Cv/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
002401 B6.129S2-Igll1tm1Cgn/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C A1 T1 T1 G1 A1 T1 C1
002407 C57BL/6-Prf1tm1Sdz/J T8 T8 A8 T8 C8 G8 A8 G8 T8 C8 A8 T8 T8 G8 A8 T8 T8
002423 NON/ShiLtJ A98 C97 C99 C99 T98 T89 A97 T93 T99 A98 A97 C99 T98 G98 C99 C97 C98
002448 129S1/SvImJ T202 C194 C195 C146 T176 G182 A203 T156 G159 A195 A199 T202 T201 G201 A203 C181 C184
002468 KK.Cg-Ay/J T185 C183 C184 T172 T184 G176 G187 T146 T187 A185 G182 T184 G186 G186 A184 T182 C186
002496 BALB/c-Il4tm2Nnt/J A8 T5 A8 T6 T3 G8 A7 T1 T8 A7 A7 C5 G5 G6 C7 C5 C8
002565 A.B6-Tyr+/J T10 C10 C10 C9 T10 T10 A10 T9 T10 A10 A10 C10 G10 G10 A10 T10 C10
002570 NOD.Cg-PrkdcscidB2mtm1Unc/J A21 T14 C14 C14 T14 G17 A19 T12 T19 A20 G17 C16 T20 G18 C21 C17 C19
Section 1 - Page 12 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
002591 NOD.B10Sn-H2b/J A106 T100 C107 C74 T101 G99 A107 T79 T107 A103 G105 C107 T106 G105 C105 C107 C106
002609 B6.129P2-Nos2tm1Lau/J T4 T4 A4 T3 C4 G4 A4 G0 T4 C4 A4 T4 T4 G4 A4 T3 T4
002620 B6.129S2-Tnfrsf1btm1Mwm/J T4 T4 A4 T3 C4 G4 A4 G2 T4 C4 A4 T4 T4 G4 A4 T4 T4
002633 B6;129S4-Nos1tm1Plh/J T6 C6 C6 C/T1,T1 C6 G6 A5,A/G1 G6 G5 C6 A6 T6 T6 G6 A6 T6 C6
002650 B6.129S2-Il6tm1Kopf/J T4 T4 A4 T4 C4 G4 A4 G2 T4 C4 A4 T3 T4 G4 A4 T4 T4
002665 B6.129S2-Cd8atm1Mak/J T4 T4 A4 T4 C4 G4 A4 G3 T4 C3 A3 T4 T4 G3 A4 T4 T4
002666 B6.129S2-Cd28tm1Mak/J T12 C12 A12 T12 C12 G12 A12 G12 T12 C12 A12 T12 T12 G12 A12 T11 T12
002684 B6.129P2-Nos3tm1Unc/J T14 T8 A11 T5 C12 G13 A14 G4 T14 C14 A14 T8 T13 G14 A13 T14 T14
002692 B6.129S1-Il12atm1Jm/J T5 T5 A5 T5 C5 G5 A5 G4 T5 C5 A5 T5 T5 G4 A4 T5 T5
002693 B6.129S1-Il12btm1Jm/J T4 T4 A4 T4 C4 G4 A4 G3 T4 C4 A4 T4 T4 G4 A4 T4 T4
002713 B6;129S-Oxttm1Wsy/J T1 T/C1 A1 T/C1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T/C1 C1
002719 B6.129S4-Wt1tm1Jae/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
002726 B6SJL-Tg(SOD1-G93A)1Gur/J A2,A/T9,
T3
C2,C/T4,
T2A15 C2,T4
C7,C/T1,
T2G15 A15
G4,G/T1,
T6T15 A/C11
A6,A/G3,
G3
C1,C/T9,
T2
G5,G/T5,
T5G15
A2,A/C8,
C3T14
C1,C/T9,
T3
Section 1 - Page 13 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
002760 C57BLKS/J-Npc1spm/J T1 T1 A1 T1 C1 T1 G1 G1 T1 A1 G1 T1 T1 G1 C1 C1 T1
002761 B10.Cg-Tg(TcrAND)53Hed/J T4 T4 A4 T4 C4 G4 A4 G0 T4 C4 A4 T4 T4 G4 C4 T3 T4
002770 B6.129S2-Cd40lgtm1Imx/J T4 T4 A4 T4 C4 G4 A4 G4 T4 C4 A4 T4 T4 G4 A4 T4 T4
002777 B6.129S2-Adra2atm1Lel/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
002782 B6;129P2-Ccr5tm1Kuz/J T3 C3 C3 C3 T4 G3 A3 T0 G2 A3 A3 T3 T3 G3 A3 T3 C3
002810 B6CBA-Tg(HDexon1)62Gpb/1J T24 T19 A1,A/C5C1,C/T4,
T2
C4,C/T1,
T2
G5,G/T8,
T3A24
G2,G/T9,
T1
G1,(G/T
or T)23A2,A/C15 A2,A/G22 C/T15,T3 T24 G24 A22 C/T1,T1 C/T21,T2
002818 B6.129-Tnfrsf1atm1Mak/J T3 T3 A3 T3 C3 G3 A3 G0 T3 C3 A3 T3 T3 G3 A3 T3 T3
002828 C.129S2-Stat6tm1Gru/J A8 T8 A8 T8 T8 G8 A8 T8 T8 A8 A8 C8 G8 G8 C8 C8 C8
002835 C57BL/6-RelbTg(H2-K1/GH1)106Bri/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
002849 B6;129P-Nfkb1tm1Bal/J T4 T3 C4 T4 T3 G3 A5 G0 T5 C4 A3 T5 T4 G4 A4 T4 C4
002911 B6;129X1-Dsg3tm1Stan/J C1 A/C1 C1 C1 G1 A1 G1 T1 A1 A1 T1 G/T1 G1 A1 C/T1 C/T1
002915 B6;129S2-Seletm1Hyn/J T1 T1 A/C1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 C/T1 C1
002928 B6.129P2-Cd40tm1Kik/J T3 T2 A3 T2 C2 G2 A3 G1 T3 C3 A2 T3 T3 G3 A3 T2 T2
Section 1 - Page 14 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
002930 C.C3-Tlr4Lps-d/J A12 T13 A12 T7 T14 G13 A13 T6 T13 A13 A13 C13 G13 G13 C13 C13 C13
002944 B6.129S2-Tap1tm1Arp/J T4 T4 A4 T4 C4 G4 A4 G4 T4 C4 A4 T4 T4 G4 A4 T4 T4
002983 MRL.CBAJms-Faslpr-cg/J A5 T4 C5 C1 T4 T5 A5 T4 G5 A5 A5 C5 T4 G5 C5 C5 C1
003008 B6;129S6-Tnftm1Gkl/J T17 T16 A17 T12 C17 G17 A16 G13 G3,T14 C17 A16 T17 T17 G17 A17 T15 C13
003011 SJL/J-Slc9a1swe/J A2 C2 A2 C2 T2 G2 A2 T1 T2 A2 G2 C2 G2 G2 C2 T2 C2
003052 CBcNO7A/LtJ A1 T1 C1 C1 T1 G1 A1 T1 T1 A1 G1 C1 T1 G1 A1 C1 C1
003076 NMRI/Gat-Tg(MGMT)3Bec/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
003082 129S1/SvImJ-Bcl2tm1Mpin/J T1 C1 C1 C1 T1 G1 A1 T1 A1 A1 T1 T1 G1 A1 C1 C1
003115 STOCK Tg(ACTB-EGFP)B5Nagy/J T3 T3A1,A/C1,
C1C2,C/T1 C1,T2 G3 A3 G2,T1 T3 A1,C2 A3 C3 G2,T1 G3 A3 T3 C2,T1
003145 C.129S7(B6)-Rag1tm1Mom/J A25 T12 A12 T12 T23 G24 A25 T20 G8,T4 A12 A25 C19 G25 G23 C19 C23 C25
003153 WLC.C-H2d.GR-Mtv2/MorJ T1 C1 A1 T1 C1 G1 A1 G1 T1 A1 A1 C1 G1 C1 A1 T1 C1
003183 B10.D2-Tg(Igh2k3-83)1Nemz/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 C1 T1 T1
003198 STOCK Tg(huS100B)5Daoh/J A/T1 A1 C1 C/T1 G1 A/G1 T1 C1 A/G1 C1 T1 G1 A/C1 C1 C1
Section 1 - Page 15 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
003200 B10.PL-H2uH2-T18a/(73NS)Sn-Tg(TCRB)C14Jg/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 C1 T1 T1
003208 STOCK Tg(DR4)1Jae/J T2 T2 A2 T0 T2 G2 A2 G2 T2 A2 A2 T2 T2 G1 A2 C0 T2
003243 B6;129S-Tnfrsf1atm1Imx Tnfrsf1btm1Imx/J T6 T6 A4 T5 C6 G6 A6 G4 G6 C6 A6 T6 T6 G6 A6 T6 T6
003257 FVB/N-Tg(GFAPGFP)14Mes/J T2 C2 C2 T2 T2 G2 A2 T2 G2 A2 G2 C2 T2 C2 A2 T2 C2
003288 B6.129S7-Ifngr1tm1Agt/J T12 T12 A12 T8 C11 G12 A12 G5 T12 C12 A11 T12 T12 G12 A12 T12 T12
003291 C57BL/6-Tg(ACTB-EGFP)1Osb/J T16 T14 A16 T11 C13 G13 A16 G8 T16 C14 A16 T14 T15 G16 A15 T11 T16
003297 FVB;129-Adatm1Mw
Tg(PLFSADA)2465Rkmb/J T1 C1 C1 T1 G1 A1 T1 G1 A1 A/G1 T1 T1 G1 A1 C1 C1
003300 B6.NOD-(D17Mit21-D17Mit10)/LtJ T75 T73 A73 T62 C74 G71 A74 G46 T76 C72 A75 T73 T74 G73 A68 T73 T75
003303 C.Cg-Tg(DO11.10)10Dlo/J A6 T6 A6 T6 T5 G6 A6 T0 T6 A6 A6 C6 G6 G6 C6 C6 C6
003314 FVB/N-Tg(Ella-cre)C5379Lmgd/J T2 C2 C2 T2 T2 G2 A2 T2 G2 A2 G2 C2 T2 C2 A2 T2 C2
003375 C3B6-Tg(APP695)3Dbo/J T4 C1,C/T3 A/C4 T3 T2 G3,T1 A4 G/T3,T1 G2,T2A1,A/C2,
C1A4 C/T1,T3 T4 G4
A1,A/C2,
C1
C1,C/T2,
T1C2,C/T2
003451 129-Smad3tm1Par/J T5 C5 C5 C5 T4 G5 A5 T5 G5 A5 A5 T5 T5 G4 A5 C5 C4
003453 STOCK Hdhtm2Mem/J A3 C3 C3 C3 T3 G3 A3 T3 G3 A3 G3 C3 T3 G3 A/C1,C2 C3 C3
Section 1 - Page 16 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
003462 B6.129S1-Thrbtm1Df/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
003466 B6;D2-Tg(Sycp1-cre)4Min/J T1 C1 A/C1 C1 C/T1 G/T1 A/G1 G/T1 T1 A1 A1 C/T1 T1 G1 A1 C/T1 T1
003474 B6.129S4-Gt(ROSA)26 Sortm1Sor/J T15 T11 A13 T9 C14 G14 A15 G6 T15 C11 A15 T12 T15 G13 A11 T6 T15
003475 C57BL/6-Tg(HLA-A2.1)1Enge/J T12 T12 A12 T12 C12 G12 A12 G6 T12 C12 A11 T12 T12 G12 A12 T12 T12
003478 C.129P2-Cbx2tm1Cim/J A1 T1 A1 T1 T1 G1 A1 T1 T1 A1 C1 G1 G1 C1 C1 C1
003504 B6;129-Gt(ROSA)26Sortm1Sho/J T2 T2 A2 T2 C2 G2 A2 G2 T2 C2 A2 T2 T2 G2 A2 T2 C1,T1
003523 B6.ROP/Le-Os/J T1 T1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
003548 C57BL/6-Ins2Akita/J T14 T11 A14 T8 C10 G11 A14 G4 T14 C11 A14 T12 T11 G14 A12 T7 T13
003552 B6129-Tg(Wap-cre)11738Mam/J T3 C2,C/T1 A/C1,C2 T3 C/T3 G3 A3 G/T2,T1 G2,T1 A2,A/C1 A/G2 T3 T3 C/G3 A3 C/T2,T1 C1,C/T2
003554 B6;SJL-Tg(Col2a1-cre)1Bhr/J A/T1 C/T1 A1 T1 G1 A1 G1 T1 A/C1 A1 T1 T1 G1 C1 T1 T1
003558 B6.129-Grm5tm1Rod/J T3 T3 A3 T3 C2,C/T1 G3 A3 G3 T3 C3 A3 T3 T3 G3 A3 T2 T2,C1
003573 B6.Cg-Tg(Ins2-cre)25Mgn/J T2 T2 A2 T2 C2 G2 A2 G2 T2 C2 A2 T2 T2 G2 A2 T2 T2
003580 129S4/SvJae-Pparatm1Gonz/J T12 C10 C12 C12 T11 G11 A11 T11 G10 A11 A12 T12 T12 G11 A11 C11 C11
Section 1 - Page 17 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
003610 B6.129S4-Cd80tm1ShrCd86tm2Shr/J T12 T12 A12 T12 C12 G12 A12 G12 T12 C12 A12 T11 T12 G12 A12 T11 T12
003612 B6C3Fe a/a-Trak1hyrt/J T1 C/T1 A1 T1 T1 G/T1 A1 G1 G1 A/C1 A1 C1 T1 G1 A/C1 C/T1 C/T1
003641 B6.129S4-C3tm1Crr/J T5 T5 C5 C2,C/T2 C4 G4 A5 G4 T5 C5 A5 T4 T5 G4 A5 C4 C2,T/C3
003648 C3Sn.BLiA-Pde6b+/Dn T12 C11 C10 C11 T12 T11 A11 T11 G11 A11 A11 C12 T10 G11 C12 C12 C12
003658 STOCK Tg(TIE2GFP)287Sato/J T12 C12 C12 C12 T12 G12 A12 T12 G11 A12 G12 C12 T12 C4, G8 A11 T12 C12
003741 B6D2-Tg(Prnp-MAPT)43Vle/J T2 C/T2 A1,A/C1 C/T2 C/T2 G1,G/T1 A/G2 G/T1,T1 T2 A1,A/C1 A2 C/T1,T1 T2 G2 A2 C/T2 C/T1,T1
003770 B6.129X1-Trpv1tm1Jul/J T4 T4 A4 T4 C4 G4 A4 G4 T4 C4 A4 T4 T4 G4 A4 T4 T4
003787 B6cC3-1/KccJ T1 C1 A1 C1 C1 T1 A1 G1 T1 A1 A1 T1 T1 G1 C1 C1 T1
003829 STOCK Tg(Wnt1-cre)11Rth Tg(Wnt1-GAL4)11Rth/J T2 C2 A2 C2 T2 G2 A2 T0 T2 A2 G2 C2 T2 G2 A/C2 T2 C2
003831 C57BL/6-Tg(TcraTcrb)1100Mjb/J T4 T4 A4 T4 C4 G4 A4 G4 T4 C4 A4 T4 T4 G4 A4 T4 T4
003843 NOD.Cg-PrkdcscidTg(Ins2-GAD2)1Lt/LtJ A3 T3 C3 C3 T3 G3 A3 T2 T3 A3 G3 C3 T3 G3 C3 C3 C3
003897 DBA/1-Abca1tm1Jdm/J T2 C2 C2 C2 T2 T2 G2 T2 G2 A2 G2 C2 T2 G2 A2 C2 C2
003899 STOCK Cd44tm1Hbg/J T15 C2,T14 A16 T5 C15 G17 A17 G11 T15 C14 A16 T16 G2,T15 G16 A16 T8 T17
Section 1 - Page 18 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
003916 B6(Cg)-Col2a1sedc/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
004064 FVB/N-Morc1Tg(Tyr)1Az/J T1 C1 C1 T1 T1 G1 A1 T1 G1 A1 G1 C1 T1 C1 A1 T1 C1
004077 B6;129-Gt(ROSA)26Sortm2Sho/J T11 C1,T10 C11 C1,T10 C11 G11 A11 T7 G10 A11 A11 T11 T11 G11 A11 T11 T11
004103 B6.Cg-Tac1tm1Bbm/J T2 T2 A2 T2 C2 G2 A2 G2 T2 C2 A2 T2 T2 G2 A2 T2 T2
004104 FVB.Cg-Mmp9tm1Tvu/J T12 C11 C11 T12 T11 G12 A12 T11 G12 A12 G12 C12 T12 C12 A12 T12 C12
004165 B6.129X-Ephx2tm1Gonz/J T1 C/T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
004178 B6.Cg-Tg(ACTB-Bgeo/GFP)21Lbe/J T1 T1 A1 T1 C1 G1 A1 G0 T1 C1 A1 T1 T1 G1 A1 T1 T1
004191 B6.Cg-Tg(HLA-A/H2-D)2Enge/J T3 T3 A3 T3 C3 G3 A3 G3 T3 C3 A3 T3 T3 G3 A3 T3 T3
004194 C57BL/6-Tg(TcraTcrb)425Cbn/J T2 T2 A2 T2 C2 G2 A2 G2 T2 C2 A2 T2 T2 G2 A2 T2 T2
004223 CHa.SWV(C3Fe)-Mbpshi/J A1 T1 A1 T1 T1 G1 A1 T1 T1 A1 A1 C1 G1 G1 C1 C1 C1
004234 B6;129S-Fgfr3tm1DorJ T1 T1 A/C1 C/T1 C/T1 G1 A1 G/T1 T1 C1 A1 T1 T1 G1 A1 T1 T1
004288 129X1-Smotm1Amc/J T1 C/T1 C1 C1 G1 A1 G1 A1 A1 G/T1 G1 A1 C1
004290 129-Ihhtm1Amc/J T2 C2 C2 C2 T2 G1 A2 T2 G2 A2 A2 C2 G/T2 G2 A2 C2 C2
Section 1 - Page 19 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
004337 129.Cg-Foxg1tm1(cre)Skm/J T2 C2 C2 C2 T2 G2 A2 T2 G2 A2 A2 C1,C/T1 G2 G2 A2 C2 C2
004346 NOD.Cg-Prkdcscid
Tg(Ins2-CD80)3B7Flv/DvsJ T1 T1 C1 T1 C/T1 G1 A1 T1 T1 A1 G1 C1 T1 G1 C1 C1 C1
004353 C57BL/6-Tg(UBC-GFP)30Scha/J T6 T6 A6 T6 C6 G6 A6 G6 T6 C6 A6 T6 T6 G6 A6 T6 T6
004382 C57BL/6J-Chr 4A/J/NaJ T13 T12 A12 T10 T11 G13 A13 G11 T13 C13 A12 T13 T13 G13 A13 T13 T13
004388 C57BL/6J-Chr 10A/J/NaJ T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 G1 G1 A1 T1 T1
004391 C57BL/6J-Chr 13A/J/NaJ T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
004392 C57BL/6J-Chr 14A/J/NaJ T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
004393 C57BL/6J-Chr15A/J/NaJ T21 T20 A20 T20 C21 G20 A21 G20 T21 C20 A21 T21 T21 G20 A21 T19 T21
004395 C57BL/6J-Chr 17A/J/NaJ T18 T17 A18 T18 C18 G15 A18 G17 T18 C17 A18 T18 T18 G18 A17 T17 T16
004397 C57BL/6J-Chr 19A/J/NaJ T8 T9 A9 T8 C8 G8 A9 G8 T9 C9 A9 T9 T9 G9 A8 T9 T9
004399 C57BL/6J-Chr YA/J/NaJ T2 T2 A2 T2 C2 G2 A2 G2 T2 C2 A2 T2 T2 G2 A2 T2 T2
004421 B6;129-Irs2tm1Mfw/J T3 C2,C/T1 A/C2,C1 C/T1,T2 T3 G3 A3 G2,G/T1 T3 A3 A3 C/T2,T1 T3 G3 A3C1,C/T1,
T1C/T2,T1
004434 B6.129S4-Ccl2tm1Rol/J T15 T13 A15 T11 C14 G14 A15 G12 T15 C13 A15 T14 T15 G12 A13 T12 T15
Section 1 - Page 20 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
004456 NONcNZO10/LtJ A296 C289 C294 C163 T288 G290 A294 T230 T294 A291 A295 C291 T293 G295 C293 T271 C250
004472 C57BL/6J-nmf67/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
004483 NOD.NON-Thy1a/1LtJ A76 T68 C77 C55 T66 G66 A77 T49 T75 A72 G75 C77 T75 G77 C76 C67 C76
004584 B6.129-Ppargtm2Rev/J T1 T0 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T0
004585 STOCK Cav1tm1Mls/J T12 C6,T5A3,A/C3,
C6C1,T10 C12 G12 A12 G12 G3,T9 A10,C1 A12 T12 T12 G12 A12 C12 C8,T1
004596 B6;129S1-Smarcb1tm3ShoJ T2 C2 A/C2 T1,C1 C1 G2 A2 T2 T2 A/C1,C1 A2 T1 T2 G2 A2 C1 C/T2
004597 C;129S4-Ptentm1Hwu/J A/T3 C/T3 A3 T3 T3 G3 A3 T3 G3 A3 A3 T3 G3 G3 C3 C3 C3
004600 FVB-Tg(GFAP-cre)25Mes/J T2 C2 C2 T2 T2 G2 A2 T2 G2 A2 G2 C2 T2 C2 A2 T2 C2
004601 B6CBA-Tg(HDexon1)62Gbp/2J T1 T1 C1 T1 C/T1 G/T1 A1 G/T1(G/T
or T)1 A/C1 G1 C/T1 T1 G1 A1 C/T1 C/T1
004606 NOD.Cg-PrkdcscidH2-Ab1tm1Doi
Tg(HLA-DQA1,HLA-DQB1)1Dv/SzJ A1 T1 C1 C1 T1 G1 A1 T1 T1 A1 G1 C1 T1 G1 C1 C1 C1
004621 B6.129S1-Il11ra1tm1Wehi/J T1 T1 A1 T1 G1 A1 T1 C1 A1 T1 T1 G1 A1 T1 T1
004623 STOCK Tg(Fos-lacZ)34Efu/J T9 T7 A8 C5,T1 T5 T8 A6 T0 G2 A8 G6 C6 T8 G8 A/C1,C4 C6 C9
004631B6.Cg-Tg(GFAP-APOE4)1Hol
Apoetm1Unc/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
Section 1 - Page 21 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
004654 B6;CBA-Tg(Pou5f1-EGFP)2Mnn/J T2 C2 A2 C2 C2 G2 A2 T2 T2 C2 A2 C1 T2 G2 A2 T1,T/C1 T2
004657 B6.129P2-Icosltm1Mak/J T2 T2 A2 T2 C2 G2 A2 G2 T2 C2 A2 T2 T2 G2 A2 T2 T2
004659 B6.Cg-Tg(TIE2GFP)287Sato/1J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
004665 B6.129X1(FVB)-Hnf4atm1.1Gonz/J T1 T1 A/C1 C/T1 C/T1 G1 A1 G1 T1 A/C1 A1 T1 T1 G1 A1 T1 T1
004673 NOD.129(B6)-Rag1tm1MomCd80tm1Shr/JbsJ A1 T1 C1 C1 T1 G1 A1 T1 T1 A1 G1 C1 T1 G1 C1 C1 C1
004688 NOD.CB17 Prkdcscid/J-Fmn1ld-3J/J A1 T1 C1 C1 T1 G1 A1 T1 T1 A1 G1 C1 T1 G1 C1 C1 C1
004692 STOCK Tg(Hoxb7-cre)13Amc/J T2 C/T2 A2 T2 C1,C/T1 G2 A2 G2 T2 A2 A2 T2 T2 G2 A2 C2 C1,C/T1
004714 B6.129-Bace1tm1Pcw/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 C1 T1 G1 A1 T1 T1
004715 B6;129S1-Wnt7atm1Amc/J T2 C2 A1,A/C1 C1,C/T1 T2 G2 A2 T2 T1,G1 A2 A2 C/T2 T2 G2 A2 T1 C/T2
004743 B6.129S2-Airetm1.1Doi/J T3 T3 A3 T3 C1,T2 G3 A3 G3 T3 C3 A3 T3 T3 G3 A3 T3 T3
004745 B6.129P2-Esr2tm1Unc/J T2 T2 A1 T2 C2 G2 A2 G2 T2 C2 A2 T2 T2 G2 A2 T2 T2
004753 B6.Cg-Tg(Il1rn)1Dih/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
004754 B6.129S-Il1rntm1Dih/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
Section 1 - Page 22 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
004770 SW.B6 Soab/J A19 C18 C19 C14 T18 G19 A18 T16 T19 A19 G18 C19 T17 G18 C19 C18 C19
004779 STOCK Mapttm1(EGFP)Klt/J T2 C/T1,T1 A/C2 C2 C/T1,T1 G2 A2 G2 T2 A/C2 A2 T2 T2 G2 A2 C1,C/T1 C1,T1
004782 STOCK Tg(KRT14-cre)1Amc/J T2 T2 A1,C1 C1, C/T1 C/T1,T1 G2 A2 T1 G1,T1 A1,C1 A2 C2 G1,T1 G2 A2 T2 C1,T1
004804 B10.BR-H2k H2-T18a/SgSnJJrep T14 T14 A13 T5 C14 G13 A15 G9 T15 C12 A15 T14 T14 G15 C15 T14 T12
004808 STOCK Mapttm1(EGFP)Klt
Tg(MAPT)8cPdav/J T1 C/T1 A1 C/T1 T1 G1 A1 G1 G1 C1 A1 T1 T1 G1 C1 C1 T1
004816 C57BL/6J-nmf161/J T3 T3 A3 T3 C3 G3 A3 G3 T3 C3 A3 T3 T3 G3 A3 T3 T3
004818 C57BL/6J-nmf172/J T1 T1 A1 T1 C1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
004821 C57BL/6J-Nmf193/J T1 T1 A1 T1 C1 G1 A1 T1 C1 A1 T1 T1 G1 A1 T1 T1
004828 FVB.129P2-Pde6b+Tyrc-ch/AntJ T2 C2 C1 T2 T2 G2 A1 T2 G2 A2 G2 C2 T2 C2 A1 T2 C2
004830 C57BL/6J-nmf206/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
004831 C57BL/6J-nmf219/J T2 T2 A2 T2 C2 G2 A2 G2 T2 C2 A2 T2 T2 G2 A2 T2 T2
004832 C57BL/6J-Nmf220/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
004833 B6.129-Ptprqtm2Bow/J T2 T2 A2 T2 C2 G2 A2 G2 T2 A/C1,C1 A2 T2 T2 G2 A2 T1,T/C1 T2
Section 1 - Page 23 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
004847 B6;129-Gt(ROSA)26Sortm1(cre/Esr1)Nat/J T2 T2 A/C2 C2 T1 G2 A2 G2 T2 C2 A2 T2 T2 G2 A2 T2 T2
004851 C57BL/6J-Nmf128/J T1 T1 A1 T1 C1 G1 A1 T1 C1 A1 T1 T1 G1 A1 T1 T1
004863 B6.129X1-Snap25tm1Mcw/J T2 T2 A2 T2 C2 G2 A2 G2 T2 C2 A2 T2 T2 G2 A2 T2 T2
004912 B6.129P2-Akt1tm1Mbb/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 C/T1 T1
004935 C57BL/6J-ct2J/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
004936 B6.Cg-Spp1tm1Blh/J T4 T4 A4 T4 C3 G4 A4 G4 T4 C4 A4 T4 T4 G4 A4 T4 T4
004937 NOD.Cg-Tg(Ins2-tTA)1Doi/DoiJ A1 T1 C1 C1 T1 G1 A1 T1 T1 A1 G1 C1 T1 G1 C1 C1 C1
004938 FVB-Tg(YAC128)53Hay/J T2 C2 C2 T2 T2 G2 A2 T2 G2 A2 G2 C2 T2 C2 A2 T2 C2
004950 B6.129S1-Syt7tm1Nan/J T2 T2 A2 T2 C2 G2 A2 G2 T2 C2 A2 T2 T2 G2 A2 T2 T2
004964 STOCK Sftpa1tm1Kor/J T2 C2 C2 C/T1, T1 T2 G2 A2 G1 A2 G2 C2 G2 G2 C2 T2 C2
004965 C3H/HeJ-Clic5-jbg/J T1 C1 C1 C1 T1 T1 A1 T0 G1 A1 A1 C1 T1 G1 C1 C1 C1
004966 B6;CBA-Tg(Acrv1-EGFP)2727Redd/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
004971 B6.FVB-Tg(CD46)2Gsv/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
Section 1 - Page 24 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
004999 B6.129S4-Ccr2tm1Ifc/J T3 T3 A3 T3 C3 G3 A3 G2 T3 C3 A3 T3 T3 G2 A3 T3 T3
005000 B6.Cg-Tg(F2RL1)1Mslb/J T1 T1 A/C1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 C/G1 A T1 T1
005007 C57BL/6J-Nmf191/J T1 T1 A1 T1 C1 G1 A1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005008 C57BL/6J-nmf192/J T6 T6 A6 T6 C5 G6 A6 G6 T6 C6 A6 T6 T6 G6 A6 T5 T6
005009 C57BL/6J-nmf195/J T4 T4 A4 T4 C4 G4 A4 G4 T4 C4 A4 T4 T4 G4 A4 T4 T4
005010 C57BL/6J-nmf242J T4 T4 A4 T4 C4 G4 A4 G4 T4 C4 A4 T4 T4 G4 A4 T4 T4
005012 A.B6 Tyr+-Myo5ad-131J/J T2 C2 C2 C2 T2 T2 A2 T1 T2 A2 A2 C2 G2 G2 A2 T2 C2
005013 C57BL/6J-GarsNmf249/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005014 C57BL/6J-Nox3het-4J/J T1 T1 A1 T1 C1 G1 A1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005016 CByJ;B6-Cdh23v-10J/J A1 T1 A1 T1 T1 G1 A1 G/T1 T1 A1 A1 C1 G/T1 G1 A/C1 C/T1 C/T1
005018 NOD.Cg-Tg(Igk-C/Igk-V125)1Jwt/JwtJ A1 T1 C1 C1 T1 G1 A1 T1 T1 A1 G1 C1 T1 G1 C1 C1 C1
005019 NOD.Cg-Tg(Igh-6/Igh-V125)2Jwt/JwtJ A2 T2 C2 C2 T2 G2 A2 T1 T2 A2 G2 C2 T2 G2 C2 C2 C2
005020 NOD-Tg(Igh-6/Igh-V281)3Jwt/JwtJ A1 T1 C1 C1 T1 G1 A1 T1 A1 G1 C1 T1 G1 C1 C1 C1
Section 1 - Page 25 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
005023 B6.Cg-Thy1a/Cy Tg(TcraTcrb)8Rest/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 C1 T1 T1
005024 FVB.Cg-Tg(SMN2)89Ahmb Smn1tm1Msd/J T1,A/T1 C2 C2 T2 T2 G2 A2 T2 G2 A2 G2 C2 T2 G2 A2 T2 T2
005025FVB.Cg-Tg(SMN2*delta7)4299Ahmb
Tg(SMN2)89Ahmb Smn1tm1Msd/J T2 C2 C2 T2 T2 G2 A2 T2 G2 A2 G2 C2 T2 C2 A2 T2 C2
005027 B6.129S2-Il10rbtm1Agt/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005035 NOD.129S2(B6)-Ins1tm1Jja/GseJ A2 T2 C2 C2 T2 G2 A2 T1 T2 A2 G2 C2 T2 G2 C2 C2 C2
005037 C57BL/6J-Ticam1Lps2/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005039 B6.129X1-Adra1atm1Pcs/J T1 T1 A1 T1 C1 G1 A1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005043 B6;129-nmf166/J T1 T1 A1 T1 C1 G1 A1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005047 C57BL/6J-Rorasg-3J/J T2 T2 A2 T2 C2 G2 A2 G2 T2 C2 A2 T2 T2 G2 A2 T2 T2
005048 B6;129-nmf291/J T2 T2 A2 T2 C2 G2 A2 G1 T2 C2 A2 T2 T2 G2 A2 T2 T2
005050 B6;CByJ-Cacna2d2du-3J/J A1 T1 A1 T1 T1 G1 A1 T1 T1 A1 A1 C/T1 G/T1 G1 C1 C1 C1
005051 B6.Cg-KitW-sh/HNihrJaeBsmJ T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 C1
005052 PN/nBSwUmabJ T1 C1 A1 C1 T1 G1 A1 G1 G1 A1 G1 C1 T1 G1 C1 T1 C1
Section 1 - Page 26 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
005058 FVB.Cg-Tg(SMN2)2Hung Smn1tm1Hung/J T1 C1 C1 T1 T1 T/G1 A1 T1 G1 A1 G1 C1 T1 C1 A/C1 T1 C1
005064 B6;129-Slc30a3tm1Rpa/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005067 NZL/LtJ T12 C11 C12 C0 T12 G12 A12 T10 T12 A11 A12 T11 T12 G12 C12 T9 C0
005069 B6.Cg-Tg(Fabp4-cre)1Rev/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005078 NOD.Cg-Il1r1tm1Roml/HetJ A1 T1 C1 C1 T1 G1 A1 T1 A1 G1 C1 T1 G1 C1 C1 C1
005080 NOD.129-Ica1tm1Mdos/MdosJ A3 T3 C3 C3 T3 G3 A3 T3 T3 A3 G3 C3 T3 G2 C3 C3 C3
005089 B.Cg m +/+ Leprdb-Qkqk-2J/J T1 T1 A1 T1 C1 A/G1 G1 T1 C1 G1 T1 T1 G1 A/C1 C/T1 T1
005090 B6.129P2-Ccl5tm1Hso/J T2 T2 A2 T2 C2 G2 A2 G2 T2 C2 A2 T2 T2 G2 A2 T2 T2
005091 129S-Pnpla6tm1Blw/J T2 C2 C2 C2 T2 G2 A2 T2 G2 A2 A2 T2 T2 G2 A2 C2 C2
005095 C57BL/6J-nmf240/J T1 T1 A1 T1 C1 G1 A1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005096 C57BL/6J-nmf247/J T4 T4 A4 T4 C4 G3 A4 G4 T4 C4 A4 T4 T4 G4 A4 T4 T4
005098 A.B6 Tyr+-Spnb4qv-7J/J T2 C2 C2 C2 T2 T2 A2 T1 T2 A2 A2 C2 G2 G2 A2 T2 C1
005104 STOCK Tg(tetO-HIST1H2BJ/GFP)47Efu/J A/T1 C1 A/C1 C1 C/T1 G1 A/G1 G/T1 T1 A/C1 G1 T1 G1 C1 C1 C1
Section 1 - Page 27 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
005114 NOD.FVB-Tg(Ins1-Cat,Tyr)25Pne/PneJ A1 T1 C1 C1 T1 G1 A1 T1 T1 A1 G1 C1 T1 G1 C1 C1 C1
005115 NOD.FVB-Tg(INS-MT2A,Tyr)1Pne/PneJ A2 T2 C2 C2 T2 G2 A2 T1 T2 A2 G2 C2 T2 G2 C2 C2 C2
005125FVB.129S6(B6)-
Gt(ROSA)26Sortm1(Luc)Kael/J T2 C2 C2 T2 T2 G2 A2 T2 G2 A2 G2 C2 T2 C2 A2 T2 C2
005133 B10.D1-H2q/SgJ-shmy2J/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005134 STOCK Disp1tm2Amc/J T2 C1,T1 A/C1,C1 C/T1,T1 C1 G1,T1 A2 G1,T1 T2 A/C1,C1 A/G2 C1,C/T1 T2 G2 A/C2 T2 C/T2
005143 C3.B6-Tg(Fabp1-Ccnd1)4Rdb/J T1 C1 C1 C/T1 T1 T1 A1 T1 G1 A1 A1 C1 T1 G1 C1 C1 C1
005145 C57BL/6-Tg(ACTB-OVA)916Jen/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005152 B6.D2-(D2Mit1-rs3681655)/LusJ T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005155 B6.D2-(D3Mit149-rs3726528)/LusJ T2 T2 A2 T2 C2 G2 A2 T2 T2 C2 A2 T2 T2 G2 A2 T2 T2
005156 B6.D2-(rs3653796-rs3022971)/LusJ T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005166 B6.D2-(D6Mit86-D6Mit198)/LusJ T2 T2 A2 T2 C2 G2 A2 T2 T2 C2 A2 T2 T2 G2 A2 T2 T2
005167 B6.D2-(D6Mit149-D6Mit15)/LusJ T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005173 B6.D2-(D8Mit256-D8Mit42)/LusJ T1 T1 A1 T1 C1 G1 A1 G1 T1 A1 A1 T1 T1 G1 A1 T1 T1
Section 1 - Page 28 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
005174 B6.D2-(D8Mit318-D8Mit56)/LusJ A/T2, T13 T14 A14 T13 C14 G15 A13,A/G2 G0 T12 C14 A15 T15 T15 G15 A15 T14 T15
005187 B6.D2-(D13Mit79-D13Mit198)/LusJ T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005188 B6.D2-(D13Mit198-D13Mit314)/LusJ T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005206 B6.D2-(D18Mit33-D18Mit144)/LusJ T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005213 129-Slc10a2tm1Pda/J T2 C2 C1 C2 T2 G2 A2 T2 G2 A2 A2 T2 T2 G2 A1 C2 C2
005226 BALB/cJ-Mbpshi-J/J A1 T1 A1 T1 T1 G1 A1 T1 G1 A1 A1 C1 G1 G1 C1 C1 C1
005236 B6.Cg-Tg(TcraY1,TcrbY1)416Tev/J T2 T2 A2 T2 C2 G2 A2 G1 T2 C2 A2 T2 T2 G2 A2 T2 T2
005245 B6.129( C )-Nrp1tm1Ddg/J T1 C/T1 A1 T1 C1 G1 A1 G1 T1 A/C1 A1 T1 T1 G1 A1 T1 T1
005249 B6;SJL-Tg(Krt1-15-cre/PGR)22Cot/J T1 T1 A1 C/T1 T1 G1 A1 G1 T1 C1 G1 T1 T1 G1 A/C1 T1 T1
005253 C57BL/6J-Clcn1adr-mto6J/J T3 T3 A2 T3 C2 G3 A3 G1 T3 C2 A3 T3 T3 G3 A3 T3 T3
005255 C57BL/6J-nmf329/J T4 T4 A4 T4 C4 G4 A4 G3 T4 C4 A4 T4 T4 G4 A4 T4 T4
005257 B6.129S7-Itgaltm1Bll/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005258 B6.129S7-Itgadtm1Bll/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
Section 1 - Page 29 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
005260 C57BL/6J-Chr 5PWD/Ph/ForeJ T1 T1 A1 T1 C1 G1 G1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005261 C57BL/6J-Chr 6PWD/Ph/ForeJ T3 T3 A3 T3 C3 G3 A3 T1 T3 C2 A3 T3 T3 G3 A3 T3 T3
005263 C57BL/6J-Chr 12PWD/Ph/ForeJ T2 T2 A2 T2 C2 G2 A2 G1 T2 C2 A2 T2 T2 G2 A2 T2 T2
005264 C57BL/6J-Chr 14 PWD/Ph/ForeJ T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005265 C57BL/6J-Chr 15 PWD/Ph/ForeJ T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005266 C57BL/6J-Chr 16 PWD/Ph/ForeJ T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005268 C57BL/6J-Chr 18 PWD/Ph/ForeJ T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005269 C57BL/6J-Chr 19 PWD/Ph/ForeJ T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005270 C57BL/6J-Chr Y PWD/Ph/ForeJ T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005271 B6(129X1)-rcw2J/J T10 T10 A9 T10 C10 G10 A10 G9 T10 C10 A10 T10 T10 G9 A10 T9 T10
005292 B6(129S2)-jc2J/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005298 C57BL/6J-nmf313/J T6 T6 A6 T6 C5 G5 A6 G6 T6 C6 A6 T6 T6 G6 A6 T6 T6
005304 C57BL/6NJ T79 T77 A78 T77 C77 G78 A78 G65 T79 C79 A78 T78 T78 G80 A79 T80 T81
Section 1 - Page 30 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
005306 NODCaj.Cg-Igh-6tm1Cgn
Tg(Igh-VB1-8/Igh-6m)1Mjsk/FswJ A1 T1 C1 C1 T1 G1 A1 T1 A1 G1 C1 T1 G1 C1 C1 C1
005307 CBy.Cg-Thy1a
Tg(TcraCl4,TcrbCl4)1Shrm/ShrmJ A2 T2 A2 T2 T2 G2 A2 T2 T2 A2 A2 C2 G2 G2 C2 C2 C2
005309 NODCaj.Cg-Igh-6tm1Cgn
Tg(Igh-VB1-8/Igh-6)2Mjsk/FswJ A3 T3 C3 C3 T3 G3 A3 T3 T3 A3 G3 C3 T3 G3 C3 C3 C3
005313 NOD.B6-(D1Mit180-D1Mit143) (D11Mit38-D11Mit41)/DelJ A1 T1 C1 C1 T1 G1 A1 T1 T1 A1 G1 C1 T1 G1 C1 C1 T1
005314 TALLYHO/JngJ T2 C2 C2 C2 T2 T2 A2 T2 A2 G2 C2 G2 G2 A2 T2 C2
005315 B6;C3H-Tg(Scgb1a1-Scnn1b)6608Bouc/J T1 C/T1 A/C1 T1 C1 G1 A1 G/T1 T1 A/C1 A1 C/T1 T1 G1 A1 C/T1 C/T1
005316 C.Cg-Fv4r/HmJ A1 T1 A1 T1 T1 G1 A1 T1 T1 A1 A1 C1 G1 G1 C1 C1 C1
005319 B6.129-Cdh1tm2Kem/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005329 C57BL/6J-nmf318/J T4 T4 A4 T4 C4 G4 A4 G4 T4 C4 A4 T4 T4 G4 A4 T4 T4
005354 RB156Bnr/Ei-rul-Gulosfx-2J/J A1 C1 A1 C1 T1 G1 A1 T1 G1 A1 A1 C1 T1 G1 C1 C1 C1
005357 B6.129-Sema3ftm1.1Ddg/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005358 129S6/SvEvTac-Car3tm1Gkim/J T1 C1 C1 C1 T1 G1 A1 G1 A1 A1 T1 T1 G1 A1 C1 C1
005359 B6.Cg-Tg(Camk2a-cre)T29-1Stl/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
Section 1 - Page 31 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
005383 B6.129S6-Dp(16Cbr1-ORF9)1Rhr/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005384 STOCK Numbtm1Zili Numb1tm1Zili/J T1 T1 A1 C1 G1 A1 T1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005408 C;129P2-Npy1rtm1Pern/J A2 T2 A2 T2 T2 G2 A2 T2 T2 A2 A2 C2 G1,G/T1 G2 C2 C2 C2
005417 C;129P2-Npy2rtm1Pern/J A2 T2 A2 T2 T2 G2 A2 T2 T2 A2 A2 C1,C/T1 G2 G2 C2 C2 C2
005419 C;129P2-Npy5rtm1Pern/J A/T2 C/T1,T1 A2 C/T2 T2 G2 A2 T2 T2 A2 A2 C2 G1,G/T1 G2 C2 C2 C2
005423 B6.129S-Terttm1Yjc/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005427 B6.129P2-Ccr5tm1Kuz/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005429 B6.129S-Gpamtm1Rcol/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005438 STOCK Tg(ACTB-Bgeo,-DsRed*MST)1Nagy/J A/T1,T1 C/T2 A1,A/C1 T2 C1 G2 A2 G2 T2 C2 A1,A/G1 C/T1,T1 T2 G2 A/C2 C/T2 C/T1,T1
005439 B6.129S-Mecp2tm1Hzo/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005441 STOCK Tg(ACTB-DsRed*MST)1Nagy/J T1 T1 A1 T1 C/T1 G1 A/G1 G1 T1 A1 A1 C1 T1 G1 C1 C1 C1
005445 A.B6 Tyr+-nmf333/J T1 C1 C1 C1 T1 T1 A1 T1 T1 A1 A1 C1 G1 G1 A1 T1 C1
005447 C57BL/6J-Grid2ho-16J/J T3 T2 A3 T3 C3 G3 A3 G3 T3 C3 A3 T3 T3 G3 A3 T3 T3
Section 1 - Page 32 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
005448 C57BL/6J-nmf347/J T2 T2 A2 T2 C2 G2 A2 G2 T2 C2 A2 T2 T2 G2 A2 T2 T2
005449 C57BL/6J-Spnb4qv-8J/J T4 T4 A4 T3 C4 G3 A4 G4 T4 C4 A4 T4 T4 G4 A4 T4 T4
005451 C57BL/6J-nmf391/J T2 T2 A2 T2 C2 G2 A2 G2 T2 C2 A2 T2 T2 G2 A2 T2 T2
005463 B6;CByJ-Scn8a7J/J A/T1 T1 A1 C/T1 G1 A1 G/T1 T1 A/C1 A1 C1 G1 G1 C1 C1 C1
005465 C57BL/6J-Clcn1adr-mto7J/J T1 T1 A1 T1 C1 G1 A1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005468 C57BL/6J-Myo7ash1-11J/J T4 T4 A4 T4 C4 G4 A4 G4 T4 C4 A4 T4 T4 G4 A4 T4 T4
005469 C57BL/6J-nmf380/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005501 C(Cg)-Agtpbp1pcd-7J/J A1 T1 A1 T1 T1 G1 A1 T1 G1 A1 A1 C1 G1 G1 C1 C1 C1
005512 NOD.B6-Tg(HLA-A2.1)1Enge/DvsJ A1 T1 C1 C1 T1 G1 A1 T1 T1 C1 G1 C1 T1 G1 C1 C1 C1
005515 FVB-Tg(ITGAM-DTR/EGFP)34Lan/J T1 C1 C1 T1 T1 G1 A1 T1 G1 A1 G1 C1 T1 C1 A1 T1 C1
005518 C57BL/6J-Chr 3PWD/Ph/ForeJ T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005520 B6;CByJ-Cacna1atg-6J/JA1,A/T1,
T1T3 A3 T3 T3 G3 A3 G/T1, T2 T3 A3 A3 C2, C/T1 G1, G/T2 G3 C3 C3 C2, C/T1
005521 C57BL/6J-rcw3J/J T3 T3 A3 T3 C3 G3 A3 G3 T3 C3 A3 T3 T3 G3 A3 T3 T3
Section 1 - Page 33 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
005522 NOD-Tg(Ins2*Y16A)1Ell/GseJ A1 T1 C1 C1 T1 G1 A1 T1 T1 A1 G1 C1 T1 G1 C1 C1 C1
005528 B6.129P-Ly75tm1Mnz/J T2 T2 A2 T1 C2 G2 A2 G2 T2 C2 A2 T2 T2 G2 A/C2 T2 T2
005530 B6.129S-Ddit3tm1Dron/J T1 C/T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005533 C.Cg-Tg(Ins2-HA)165Bri/ShrmJ A1 T1 A1 T1 T1 G1 A1 T1 T1 A1 A1 C1 G1 G1 C1 C1 C1
005535 B6.129S7-Del(11Cops3-Zfp179)1Jrl/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005536 B6.129S7-Dp(11Cops3-Zfp179)1Jrl/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005545 C57BL/6J-mtA/J/NaJ T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005546 A/J-Chr YC57BL/6J/NaJ T1 C1 C0 C1 T1 T1 A1 T1 T1 A1 A1 C1 G1 G1 A1 T1 C1
005547 C57BL/6J-Chr Y129S1/SvImJ/NaJ T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005548 129S1/SvImJ-Chr YC57BL/6J/NaJ T1 C1 C1 C1 T1 G1 A1 T1 A1 A1 T1 G1 A1 C1 C1
005549 B6;129-Pax3tm1(cre)Joe/J T2 C/T2 A1,A/C1 T2 C1,C/T1 G2 A2 G/T2 T2 A/C2 A2 T2 G/T1,T1 G2 A2 C/T2 C/T1,T1
005550 STOCK Rac1tm1Djk/J T1 C/T1 A1 T1 C/T1 G1 A1 G/T T1 A/C A1 C/T1 T1 G1 A1 T1 C/T1
005557 NOD.Cg-PrkdcscidIl2rgtm1Wjl/SzJ A1 T1 C1 C1 T1 G1 A1 T1 T1 A1 G1 C1 T1 G1 C1 C1 C1
Section 1 - Page 34 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
005560 C57BL/6J-Dstdt-37J/J T2 T2 A2 T2 C2 G2 A2 G1 T2 C2 A2 T2 T2 G2 A2 T2 T2
005561 C57BL/6J-nmf373/J T3 T3 A3 T3 C3 G3 A3 G3 T3 C3 A3 T2 T2 G3 A3 T3 T3
005562 C3Fe(SWV) Mbpshi-Relnrl-5J/J T1 C1 C1 C1 T1 T1 A1 T1 G1 A1 A1 C1 T1 G1 C1 C1 C1
005564 FVB(Cg)-Tg(Ins2-CALM1)26Ove Tg(Cryaa-TAg)1Ove/PneJ T1 C1 C1 T1 T1 G1 A1 T1 G1 A1 G1 C1 T1 C1 A1 T1 C1
005565 B6(V)-chtl2J/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005572 STOCK Gt(ROSA)26Sortm1(rtTA,EGFP)Nagy/J T1 C1 C1 C1 T1 T1 G1 T1 T1 A1 G1 T1 G1 G1 A1 C1 C1
005582 B6.129P-Cx3cr1tm1Litt/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005601 B6.129S-Atxn1tm1Hzo/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005620 B6;D2-Tg(S100B-EYFP)1Wjt/J T2 C/T2 C2 C/T2 C/T1 G2 A2 T2 T2 A/C2 A2 C2 T2 G2 A2 C/T2 C2
005621 B6;D2-Tg(S100B-EGFP)1Wjt/J T1 C/T1 A/C1 C1 C/T1 G/T1 A/G1 G1 T1 A/C1 A1 C/T1 T1 G1 A1 C/T1 C1
005627 B6.Cg-Tg(Thy1-YFP/Syp)10Jrs/J T1 T1 T1 C1 G1 A1 T1 A1 T1 T1 G1 A1 T1 T1
005630 B6.Cg-Tg(Thy1-EYFP)15Jrs/J T1 T1 A0 T0 C1 G1 A1 G0 T1 C1 A1 T1 T1 G1 A1 T1 T1
005633 B6;CByJ-Dstdt-38J/JA2,A/T1,
T1T4 A4 T3 T4 G4 A4 G/T2,T2 T4 A4 A4
C1,C/T2,
T1G4 G4 C4 C3,C/T1 C1,C/T3
Section 1 - Page 35 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
005635 C57BL/6J-Lama2dy-7J/J T3 T3 A3 T3 C3 G3 A3 G3 T3 C3 A3 T3 T3 G3 A3 T3 T3
005638 C57BL/6J-Tmhshscy-2J/J T2 T2 A2 T2 C2 G2 A2 G2 T2 C2 A2 T2 T2 G2 A2 T2 T2
005642 B6.Cg-Clutm1Jakh/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 C/T1 T1
005650 B6129-Tg(Myh6-cre/Esr1)1Jmk/J T1 T1 A/C1 T1 T1 G1 A1 0 T1 A/C1 A1 T1 T1 G1 A1 T1 C1
005654 B6C3-Del(16Cbr1-ORF9)1Rhr/J T1 C/T1 A1 C1 C/T1 A1 G/T1(G/T
or T)1 A1 A1 C1 T1 G1 A/C1 C/T1 C/T1
005655 B6.Cg-Tg(Tcra,Tcrb)3Ayr/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005676 STOCK C5ar1tm1Cge/J A/T1 T1 A1 T1 C/T1 G1 A1 T1 G1 A/C1 A1 T1 G1 G1 A/C1 C/T1 T1
005680 STOCK Tsc1tm1Djk/J T1 C/T1 C1 C/T1 T1 G1 A1 T1 T1 A/C1 A1 C/T1 T1 G1 A/C1 C1 C/T1
005681 B6.129S-Lipgtm1Tq/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005684 C57BL/6-Ap3b2tm1Bur/J T3 T3 A3 T3 C3 G3 A3 G3 T3 C3 A3 T2 T3 G3 A3 T3 T3
005685 NOD.Cg-Tg(Ins2-HA)165Bri/ShrmJ A1 T1 C1 C1 T1 G1 A1 T1 A1 G1 C1 T1 G1 C1 C1 C1
005712 C.129S4-C3ar1tm1Cge/J A2 T2 A2 T2 T2 G2 A2 T2 G2 A2 A2 C2 G2 G2 C2 C2 C2
005715 B6.Cg H2g7- Tg(Ins2-CD80)3B7Flv/LwnJ T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
Section 1 - Page 36 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
005718 C57BL/6J-Grid2ho-17J/J T3 T3 A3 T3 C3 G3 A3 G3 T3 C3 A3 T3 T3 G3 A3 T3 T3
005733 NOD/ShiLt- Tg(Ins2-Fas*I246N)1Ach/AchJ A1 T1 C1 C1 T1 G1 A1 T1 A1 G1 C1 T1 G1 C1 C1 C1
005734 NOD/Lt-Tg(Ins2-rtTA)1Ach/AchJ A1 T1 C1 C1 T1 G1 A1 T1 T1 A1 G1 C1 T1 G1 C1 C1 C1
005736 BKS(Cg)-calre/J T3 T3 A3 T3 C3 T3 G3 G3 T3 A3 G3 T3 T3 G3 C3 C3 T3
005741 C57BL/6J-nmf356/J T2 T2 A2 T2 C2 G2 A2 G2 T2 C2 A2 T2 T2 G2 A2 T2 T2
005744 C57BL/6J-Relnrl-6J/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1
005748 C57BL/6J-Kcnq1vtg-3J/J T3 T3 A3 T3 C3 G3 A2 G2 T2 C2 A2 T2 T2 G2 A2 T2 T3
005751 B6;CByJ-nmf419/J A1, A/T1 T3 A3 T3 T3 G3 A3 T3 T3 A3 A3 C2,T1 G3 G3 A/C2,C1 C3 C2,C/T1
005762 C57BL/6J-Chr X.1PWD/Ph/ForeJ T1 T1 A1 T1 C1 G1 A1 T1 C1 A1 T1 T1 G1 A1 T1 T1
005853 NOD.Cg-Tg(HLA-A2/H2-K)1Scr/ShrmJ A1 T1 C1 C1 T1 G1 A1 T1 A1 G1 C1 T1 G1 C1 C1 C1
005898 BKS(Cg)-trls/J T4 T4 A3 T4 C4 T4 G4 G4 T4 A4 G4 T4 T4 G4 C4 C4 T4
005962 C57BL/6J-uwl/J T3 T3 A3 T3 C3 G3 A3 G3 T3 C3 A3 T3 T3 G3 A3 T3 T3
006009 C57BL/6J-rcw4J/J T2 T2 A2 T2 C2 G2 A2 G2 T2 C2 A2 T2 T2 G2 A2 T2 T2
Section 1 - Page 37 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
006045 C3HeB/FeJ-Xsl/J T1 C1 C1 C1 T1 T1 A1 G1 A1 A1 C1 T1 G1 C1 C1 C1
006107 C57BL/6J-rslk2J/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
006111 B6(Cg)-Ush1gjs-2J/J T1 T1 A1 T1 C1 G1 A1 G1 T1 C1 A1 T1 T1 G1 A1 T1 T1
006246 A/J-sunk/J T1 C1 C1 T1 T1 A1 T1 T1 A1 A1 C1 G1 G1 A1 T1 C1
006247 C3H/HeJ-servr/J T1 C1 C1 C1 T1 T1 A1 T1 G1 A1 A1 C1 T1 G1 C1 C1 C1
006252 LT/SvEiJ T2 C2 A2 T2 C2 G2 A2 T2 C2 G2 C2 G2 G2 C2 C2 C2
006372 C57BL/6J-Chr 11.3PWD/Ph/ForeJ T1 T1 A1 T1 C1 G1 A1 T1 C1 A1 T1 T1 G1 A1 T1 T1
100002 B6AF1/J T13 C/T12 A/C11 C/T12 C/T10 G/T12 A13 G/T6 T13 A/C13 A13 C/T13 G/T11 G13 A13 T13 C/T13
100003 CAF1/J A/T17 C/T17 A/C18 C/T15 T19 G/T16 A19 T17 T18 A19 A19 C19 G19 G19 A/C18 C/T17 C19
100004 C3D2F1/J T4 C4 C4 C3 T4 T4 A/G4 T4 G4 A4 A4 C4 T4 G4 A/C4 C4 C4
100006 B6D2F1/J T47 C/T27 A/C31 C/T16 C/T14 G/T24 A/G35 G/T15 T49 A/C28 A48 C/T27 T49 G27 A44 C/T27 C/T32
100007 CB6F1/J A/T12 T19 A20 T9 C/T14 G14 A20 G/T9 T20 A/C17 A19 C/T19 G/T19 G20 A/C16 C/T10 C/T14
100008 NZBWF1/J T25 C23 C25 C23 T24 G24 A25 T22 T23 C23 G25 C/T21 T25 G25 A24 C/T20 C23
Section 1 - Page 38 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 1 01-
30.0
01-
52.0
02-
27.3
03-
15.3
04-
10.9
05-
0.0
05-
5.5
06-
3.3
07-
1.0
08-
4.4(
1)
09-
6.6
09-
53.6
10-
0.0
10-
45.9
11-
2.2
11-
9.8
12-
9.8
-- Go to Section 2 SNP Name
-- Go to Explanation of Results
AF0
6783
6_35
0A_1
M-2
2381
_169
_2
M-0
9011
_1
M-0
2707
_1
M-0
1609
_1
M-0
2187
_2
M-0
5233
_3
M-0
2094
_1
**M
-057
82_1
M-1
1559
_2
M-0
5537
_1
M-0
4819
_1
M-0
9526
_2
M-0
5799
_1
M-0
8924
_1
M-0
5727
_1
M-0
7403
_3
Stock No. Strain
100009 CByB6F1/J A/T4 T1 A3 T0 C/T0 G2 A6 G/T0 T5 A/C0 A5 C/T0 G/T0 G5 A/C0 C/T0 C/T0
100010 B6C3F1/J T24 C/T20 A/C20 C/T17 C/T15 G/T16 A23 G/T10 T22 A/C17 A24 C/T18 T24 G23 A/C16 C/T19 C/T21
100011 B6CBAF1/J T47 T41 A/C33 C/T24 C/T21 G/T29 A46 G/T17 T46 A/C35 A/G39 C/T36 T44 G47 A44 C/T26 C/T36
100012 B6SJLF1/J A/T15 C/T10 A13 C/T8 C/T8 G15 A16 G/T10 T16 A/C10 A/G10 C/T14 G/T10 G16 A/C10 T15 C/T16
100015 CByD2F1/J A/T4 C/T4 A/C4 C/T4 T4 G/T4 A/G4 T4 T4 A4 A4 C4 G/T4 G4 A/C4 C4 C4
100016 C3FeB6F1/J T14 C/T10 A/C10 C/T11 C/T11 G/T8 A13 G/T4 T14 A/C13 A14 C/T14 T14 G14 A/C12 C/T9 C/T11
100019 CSJLF1/J A4 C/T4 A4 C/T4 T4 G4 A4 T4 T4 A4 A/G4 C4 G4 G4 C4 C/T4 C4
100299 PLSJLF1/J A19 C19 A/C19 C19 T19 G/T14 A19 T18 T19 A19 A/G19 C18 G17 G19 C19 C/T16 C18
100409 B6129PF1/J-Aw-J/Aw T7 C/T6 A/C6 C/T6 C/T0 G7 A7 G/T6 T7 A/C4 A7 T6 T7 G7 A6 C/T0 C/T5
100410 WBB6F1/J-KitW/KitW-v T19 T19 A/C17 T13 C17 G/T13 A19 G12 T19 C19 A/G19 T19 T19 G19 A/C18 C/T18 C/T18
100492 B6129PF1/J T12 C/T12 A/C12 C/T12 C/T12 G12 A12 G/T5 T12 A/C12 A12 T12 T12 G12 A12 C/T12 C/T12
100903 B6129PF2/J T8C1,C/T6,
T1A/C5,C3 C1
C5,C/T3,
T1G8 A8 G/T8 G2,T6
A1,A/C6,
C1A9 T9 T9 G9 A9 C/T4,T1 C/T5
101045 B6129SF2/J T1 C1 C1 C/T1 C/T1 A1 T1 G1 C1 A1 T1 T1 G1 A1 T1 C/T1
Section 1 - Page 39 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
000021 B6.Cg-Ay/J C19 T18 T17 G19 A18 A20 T17 G18 G20 T19 4 H2b
000031 BXD24b/TyJ C1 T1 T1 A1 T1 A1 C1 G1 G1 T1 C1
000049 C57BL/6J-KitW-v/J C18 T18 T16 G18 A18 A18 T18 G18 G18 T17
000051 C57BL/6J-Aw-J/J C124 T119 T117 G125 A115 A124 T123 G123 G125 T125 C9
000058 B6(Cg)-Tyrc-2J/J C12 T11 T12 G10 A12 A12 T12 G12 G12 T12 T6 8 H2b
000140 A.BY-H2bcH2-T18f/SnJ T4 G4 T4 G4 A4 A4 T4 A4 A4 T4
000198 C3FeLe.B6-a/J T4 G4 T4 A4 A3 G4 C4 G3 G4 T4
000231 B6C3Fe a/a-Csf1op/J C4,T7 G6,T6 T9A5,A/G1,
G1A13 A/G3,G3
C2,C/T2,
T2G11 G9 T14
000293 CHMU/LeJ T1 T1 T2 G2 T2 A2 T2 G2 G2 T2
000305 B6.Cg-Fbn1Tsk+/+Pldnpa/J C6 T6 T6 G6 A6 A6 T6 G6 G6 T6
000383 B6.C-TyrcH1bHbbd/ByJ C53 T50 T51 G54 A54 A53 T53 G54 G54 T54 C4
000406 B6.PL-Thy1a/CyJ C133 T126 T121 G133 A126 A131 T133 G128 G131 T134 C4 4 H2b
000438 C3.SW-H2b/SnJ T104 G102 T98 A107 A105 A107 T107 G104 G104 T106 C4 4 H2b
Section 2 - Page 1 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
000457 B10.RIII-H2rH2-T18b/(71NS)SnJ T110 T104 T96 G111 A94 G109 C109 G110 G109 T111 C1 8 H2r
000458 B10.PL-H2uH2-T18a/(73NS)SnJ T104 T100 T96 G105 A99 G105 C98 G103 G104 T106 C8 C8 4 H2u
000461 B10.D2-Hc0H2dH2-T18c/oSnJ T66 T66 T63 G67 A64 A64 C63 G67 G67 T67 8 H2d 16 Hc0
000463 B10.D2-Hc1H2dH2-T18c/nSnJ T97 T88 T89 G95 A84 A96 C97 G96 G97 T96 C9 1 H2d 12 Hc1
000465 B10.BR-H2kH2-T18a/SgSnJ T90 T81 T84 G89 A84 G91 C86 G88 G92 T93 C2 4 H2k
000466 B10.AKM-H2mH2-T18a/SnJ T103 T91 T81 G101 A86 G104 C104 G97 G103 T102 C4 C4
000467 B10.A-H2i5H2-T18a/(5R)SgSnJ T46 T38 T40 G44 A40 A43 T47 G42 G47 T46 C4 C1 4 H2i5
000468 B10.A-H2h2/(2R)SgSnJ T94 T91 T77 G93 A74 G92 C91 G91 G93 T94
000469 B10.A-H2aH2-T18a/SgSnJ T108 T101 T102 G108 A107 G108 C108 G108 G109 T107 C4 4 H2a
000470 AK.M-H2mH2-T18a/nSnJ T1 T1 T1 G1 T1 G1 C1 G1 A1 T1
000471 A.SW-H2sH2-T18b/SnJ T69 G62 T65 G68 A64 G70 C70 A67 A64 T67 C9 4 H2s 4 Hc0
000476 C57BL/10ScSnJ T197 T192 T177 G199 A201 A201 T199 G198 G200 T199 C16
000480 C3.MRL-Faslpr/J T4 G4 T3 A4 A4 G4 C4 G3 G4 T4
Section 2 - Page 2 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
000482 B6.MRL-Faslpr/J C293 T247 T226 G295 A269 A292 T300 G286 G304 T300 G7 4 H2b
000483 B6.SB-Yaa/J C2 T2 T2 G2 A2 A2 T2 G2 G2 T2
000485 MRL/MpJ-Faslpr/J T218 G209 T193 A222 T195 G222 C215 G204 A214 T219 C10 4 H2k
000486 MRL/MpJ T130 G126 T127 A133 T110 G132 C129 G129 G133 T133 C6 C8 4 H2k
000501 B6CBACa Aw-J/A-Aifm1Hq/J C1,T1G1,G/T3,
T1T7 A1,A/G4 A/T3 A/G2,G1 C1,C/T5 G7 G6 T7
000533 C57BL/6J-Ghrhrlit/J C18 T15 T17 G13 A17 A18 T17 G12 G18 T15
000574 CBA-Pdss2kd/J T1 G1 T1 A1 T1 G1 C1 G1 G1 C1
000629 C57BL/6J-Lystbg-J/J C107 T91 T100 G104 A101 A107 T107 G107 G107 T109 T1 T10 4 H2b
000632 B6.V-Lepob/J C397 T274 T287 G382 A305 A450 T413 G351 G441 T418 G14 4 H2b
000635 C3H/HeOuJ T121 G121 T112 A123 A117 G120 C122 G122 G120 T119 C6 4 H2k
000642 BKS.Cg-m+/+Leprdb/J C303 T268 T213 G310 A255 A320 C279 G279 G325 C313 C3 A10 C2 4 H2d
000645 A/HeJ T97 G94 T91 G96 A92 G98 C97 A90 A98 T99 C4 12H2a
000646 A/J T253 G237 T217 G254 A242 G257 C250 A228 A238 T254 G3 C6 8 H2a
Section 2 - Page 3 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
000647 A/WySnJ T135 G129 T119 G137 A105 G137 C131 A118 A134 T137 C7 C4
000648 AKR/J T143 T128 T130 G147 T136 G150 C146 G148 A145 T150 C2 4 H2k
000651 BALB/cJ T366 G326 T310 G365 T321 A376 C363 A327 A367 T374 C2 A1 C19 10 H2d
000653 BUB/BnJ T118 G108 T98 G116 A106 G120 C114 G109 A119 T116 C4 4 H2q
000654 CBA/CaJ T97 G87 T72 A99 T75 G98 C88 G92 G98 T99 C6
000655 CBA/CaH-T(14;15)6Ca/J T41 G41 T39 A42 T36 G41 C39 G40 G42 T41 C6
000656 CBA/J T309 G254 T233 A316 T230 G320 C279 G294 A288 C314 A1 C12 4 H2k
000657 CE/J C30 G30 T29 A30 T22 G30 C28 G29 G29 C29 C4 4 H2k
000658 C3HeB/FeJ T63 G53 T50 A65 A54 G65 C62 G63 G64 T64 C 4 H2k
000659 C3H/HeJ T255 G234 T210 A260 A217 G264 C252 G245 G258 T262 C2 A1 8 H2k
000661 C3H/HeSnJ T64 G57 T55 A64 A60 G65 C63 G60 G65 T64 C3 C10 4 H2k
000662 C57BLKS/J C83 T79 T79 G83 A78 A78 C81 G80 G82 C79 C5 4 H2d
000664 C57BL/6J C1122 T908 T956 G1145 A951 A1189 T1165 G1045 G1228 T1215 T28 G1 T15 11 H2b 3 Hc1
Section 2 - Page 4 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
000665 C57BL/10J T132 T120 T115 G126 A121 A131 T137 G127 G132 T135 C6 C4 4 H2b
000666 C57BL/10SnJ T111 T103 T105 G111 A103 A111 T113 G113 G113 T111 C12 4 H2b
000667 C57BR/cdJ C100 G93 T86 G99 T79 G99 C100 G102 G100 T101 C2
000668 C57L/J C116 G108 T103 G119 T107 A118 T118 G113 G117 T119 C2 C10
000669 C58/J T98 T92 T87 G98 T86 G99 C95 G90 G99 T98 C4 4 H2k
000670 DBA/1J T121 T114 T95 A124 T104 G123 C120 G121 G122 C118 A1 C8
000671 DBA/2J T338 T300 T270 A352 T258 A357 C320 G317 G359 C354 C11 4 H2d
000673 HRS/J T25 T25 T26 G27 A27 G27 C27 A22 A25 T26 C6
000674 I/LnJ C89 G84 T83 G86 A88 G90 C88 A88 G90 C90
000676 LP/J T98 G92 T89 A101 T97 A102 T102 G96 G100 C101 C2 4 H2b
000677 MA/MyJ T3 G4 T4 G4 A4 G4 C4 G3 G4 C4 3 H2k
000679 P/J C14 G15 T14 G15 T11 G15 C15 G15 G15 T15 4 H2p
000680 PL/J T105 T100 T93 G103 A90 G105 C104 G102 A98 T102 C2 4 H2u
Section 2 - Page 5 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
000682 RF/J T90 T85 T67 G92 T56 G92 C92 G92 A93 T93
000683 RIIIS/J T111 T101 T102 A111 T97 G112 C111 G110 A109 T111 C7 4 H2r
000684 NZB/BlNJ T145 T139 T127 G148 T133 A146 C148 G147 G148 T150 C8 4 H2d
000686 SJL/J T187 G177 T166 G185 A178 G185 C187 G184 G188 T187 C11 C8 4 H2s
000687 SM/J T110 T107 T103 G108 T105 G108 C109 G110 G112 C108 C1 4 H2v
000689 SWR/J T83 G76 T76 G82 A77 G82 C78 G82 G83 C80 C4 C2 4 H2q
000690 129P3/J C140 G132 T128 C139 T118 A138 T137 G116 G132 C135 C7 C4 4 H2b
000691 129X1/SvJ C131 G115 T108 A131 T105 A130 T132 G131 A124 C131 C1 4 H2b
000692 WB/ReJ KitW/J C94 T87 T86 G91 A92 G96 C94 G94 G92 C96 C4 4 H2j
000693 WC/ReJ KitlSl/J C65 T59 T60 G62 A65 G62 C64 G65 G64 C63 C1
000697 B6.Cg-m+/+Leprdb/J C215 T95 T152 G213 A193 A220 T216 G211 G217 T220 G10
000711 CByJ.Cg-Foxn1nu/J T24 G7 T22 G21 T18 A23 C24 A18 A24 T24
000726 RBF/DnJ T147 G144 T129 G151 T125 G154 C150 G152 G151 T153 C6 C6
Section 2 - Page 6 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
000740 BXSB/MpJ C119 G116 T115 G118 A114 A122 T122 G112 G121 C122 C8
000811 C57BL/6J-Ptpn6me-v/J C12 T11 T12 G11 A12 A13 T12 G10 G12 T12 T6
000819 B6.Cg-Foxn1nu/J C12 T4 T10 G11 A10 A12 T10 G12 G12 T12
000928 CAST/EiJ C120 G105 G109 A123 A115 G126 C122 A109 G116 C123 C6
001011 CBA/CaHN-Btkxid/J T128 G116 T95 A126 T100 G130 C128 G121 G128 T129 C2 C4
001021 B6Smn.C3-Faslgld/J C139 T131 T133 G141 A141 A137 T139 G135 G139 T139 C5
001022 B6C3FeF1/J a/a C/T4 G/T4 T4 A/G4 A4 A/G0 C/T4 G4 G4 T4
001026 BALB/cByJ T438 G377 T370 G442 T313 A437 C428 A389 A424 T C5 A1 C14 4 H2d
001045 SI/Col Tyrp1bDnahc11iv/J T38 T33 T36 G38 A35 A38 C38 G36 G38 C38
001058 NZW/LacJ C118 T110 T102 G118 T101 G121 C121 G120 G112 T118 4 H2z
001060 B6.C-H2bm1/ByJ C112 T100 T95 G114 A100 A116 T112 G114 G114 T115 C6
001131 C3SnSmn.CB17-Prkdcscid/J T76 G68 T70 A77 A74 G66 C76 G76 G79 T77 C4 C4
001137 129P1/ReJ C64 G54 T53 A64 T63 A63 T65 G65 G64 C63 C12
Section 2 - Page 7 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
001139 C57BL/6ByJ C92 T86 T86 G92 A77 A93 T94 G94 G92 T92 4 H2b
001140 DBA/1LacJ T147 T132 T116 A147 T117 G151 C146 G140 G147 C146 C4 4 H2q 4 Hc1
001143 CBA/CaGnLeJ T3 G4 T0 A3 T4 G4 C4 G4 G3 T4
001145 WSB/EiJ T1 T0 T1 G1 T1 G1 C1 G1 A1 C1
001146 SPRET/EiJ C1 G1 G1 A1 A0 G1 T1 A1 G1 C1
001162 B6(C)-H2-Ab1bm12/KhEgJ C125 T117 T113 G126 A126 A123 T125 G122 G127 T126 C6
001201 B6CBACaF1 Aw-J/A C/T5 G/T2 T6 A/G6 A/T2 A/G2 C/T4 G6 G6 T6
001303 NOD.CB17-Prkdcscid/J T350 T308 T292 G360 A324 G358 C340 G337 A357 T378 C12 * 4 H2g
001317 B6.Cg- IghaThy1aGpi1a/J C97 T91 T91 G98 A96 A96 T93 G98 G97 T99 C12
001428 C3Fe.SWV-Mbpshi/J T4 G4 T4 A4 A4 G4 C4 G4 G4 T4
001591 RHJ/LeJ T65 G63 T62 G63 T60 A65 C63 A66 G65 T66 4 H2d
001626 NOD.NON-H2nb1/LtJ T48 T44 T39 G49 A44 G49 T49 G44 A46 T49 C4
001627 NON.NOD-H2g7/LtJ T36 G35 T35 G37 A37 G37 C35 G37 A36 C37 C
Section 2 - Page 8 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
001692 BXA1/PgnJ T1 T1 T1 G1 A1 A1 T1 G1 G1 T1
001800 FVB/NJ T167 G153 T142 G166 A153 G168 C167 G158 A166 C165 C10 8 H2q
001801 C57BL/10ScSn-Dmdmdx/J T122 T121 T117 G123 A112 A122 T126 G120 G124 T124 G4
001802 CByJ.RBF-Rb(8.12)5Bnr/J T91 G80 T77 G89 T82 A89 C87 A84 A79 T90 C2
001803 CBySmn.CB17-Prkdcscid/J T110 G102 T110 G109 T96 A110 C105 A100 A110 T111 C10
001913 B6.CB17-Prkdcscid/SzJ C112 T101 T106 G105 A110 A112 T114 G111 G117 T114 T2 T2
001925 BXSB.B6-Yaa+/MobJ C3 G3 T3 G3 A3 A3 T3 G3 G3 C3
001927 C57BL/6-Tg(APOA1)1Rub/J C16 T15 T10 G18 A11 A18 T18 G12 G18 T17
001952 C.B10-H2b/LilMcdJ T52 G50 T50 G52 T44 A51 T52 A46 A50 T52 C2 4 H2b
001953 B10.S-H2s/SgMcdJ T62 T57 T54 G64 A62 G65 C61 G59 G64 T62 C4 4 H2s
001976 NOD/ShiLtJ T162 T149 T129 G154 A135 G163 C150 G148 A156 T160 C6 A1 C6
002014 B6.SJL-PtprcaPepcb/BoyJ C111 T100 T88 G113 A97 A114 T108 G113 G116 T116 T8 4 H2b
002019 NU/J T117 G107 T114 G117 T114 G124 C118 G120 G116 T124 C7 C12 4 H2q
Section 2 - Page 9 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
002020 C57BL/6J-ApcMin/J C10 T11 T6 G12 A6 A T13 G10 G14 T12 T1
002024 B10.D1-H2q/SgJ T57 T50 T51 G57 A53 G57 C56 G56 G57 T57 4 H2q
002032 NOD.SW-H2q/J T73 T73 T71 G72 A73 G73 C72 G72 A72 T74 C4
002050 NOR/LtJ T51 T51 T52 G52 A50 G52 C52 G53 A51 T53 C4 * 4 H2g
002052 B6.129P2-Apoetm1Unc/J C67 T51 T32 G64 A32 A72 T69 G55 G81 T77 4 H2b
002065 129T2/SvEmsJ C103 G93 T91 A105 T92 A101 T105 G103 G106 C105 C2 C4 4 H2b
002073 B6;129S-Gt(ROSA)26Sor/J C10 T10 T10 G10 A10 A10 T10 G10 G10 T10 T3
002087 B6.129P2-B2mtm1Unc/J C5 T4 T4 G5 A1 A5 T4 G5 G5 T4
002096 B6;129S7-Rag1tm1Mom/J C10 T10 T10 G10 T10 A10 T10 G10 G10 T10
002101 B6.129S2-Trp53tm1Tyj/J C15 T9 T16 G16 A16 A16 T15 G16 G16 T16
002102 B6.129S2-Rb1tm1Tyj/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
002105 NZO/HlLtJ C5 G4 T5 G5 T4 G5 C5 G5 G5 T5 4 H2z
002106 KK/HlJ T168 T154 T150 G165 T122 A168 T167 G157 A162 C163 C14 4 H2b
Section 2 - Page 10 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
002116 B6.129S2-Tcratm1Mom/J C13 T13 T12 G12 A11 A13 T13 G10 G14 T13
002118 B6.129P2-Tcrbtm1Mom/J C2 T2 T2 G2 A2 A2 T1 G2 G2 T2 T2 4 H2b
002120 B6.129P2-Tcrdtm1Mom/J C3 T5 T6 G6 A6 A6 T6 G6 G6 T6 T2
002192 B6.129S7-Gt(ROSA)26Sor/J C14 T15 T12 G15 A15 A16 T16 G15 G14 T13 T8
002207 B6.129S7-Ldlrtm1Her/J C5 T6 T6 G6 A5 A6 T6 G6 G6 T6
002213 B6.129S4-Ngfrtm1Jae/J C7 T8 T7 G8 A8 A8 T8 G8 G8 T8 T3
002216 B6.129S7-Rag1tm1Mom/J C12 T6 T11 G13 A11 A11 T13 G13 G13 T13
002251 B6.129P2-Il10tm1Cgn/J C3 T4 T4 G4 A0 A4 T4 G4 G4 T4
002253 B6.129P2-Il4tm1Cgn/J C12 T12 T12 G8 A12 A12 T12 G12 G12 T12
002282 BTBR T+tf/J T15 G15 T15 A16 A12 A16 T16 G8 G16 T14 4 H2b
002286 C.129S7(B6)-Ifngtm1Ts/J T8 G8 T8 G8 T7 A7 C8 A8 A8 T8
002287 B6.129S7-Ifngtm1Ts/J C11 T2 T9 G11 A10 A11 T11 G11 G10 T10
002288 B6.129S2-Igh-6tm1Cgn/J C G/T1,T8 T15 G14 A11 A13 T15 G15 G14 T15
Section 2 - Page 11 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
002292 129-Gt(ROSA)26Sor/J C1 G1 T1 A1 T1 A1 T1 G1 G1 C1
002335 SKH2/J T24 G24 T24 G24 A18 A24 T24 G24 G24 T23
002365 B6.129S6-Cybbtm1Din/J C16 T9 T14 G16 A15 A16 T16 G16 G16 T16
002376 FVB/N-Tg(MMTVneu)202Mul/J T4 G4 T4 G4 A4 G4 C4 G4 A4 C4
002379 B6Ros.Cg-Dmdmdx-5Cv/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
002401 B6.129S2-Igll1tm1Cgn/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
002407 C57BL/6-Prf1tm1Sdz/J C8 T8 T7 G8 A8 A8 T8 G7 G8 T8
002423 NON/ShiLtJ T98 G98 T92 G99 A92 G98 T98 G94 A95 C97 C7 4 H2b
002448 129S1/SvImJ C190 G160 T153 A194 T167 A199 T194 G179 G199 C197 C12 C4 8 H2b
002468 KK.Cg-Ay/J T180 T166 T172 G179 T166 A181 T185 G182 A185 C185 C1 4 H2b
002496 BALB/c-Il4tm2Nnt/J T7 G4 T6 G5 T2 A8 C6 A4 A4 T5 C4
002565 A.B6-Tyr+/J T10 G10 T10 G10 A10 G10 C10 A9 A10 T10
002570 NOD.Cg-PrkdcscidB2mtm1Unc/J T14 T15 T14 G10 A16 G22 C14 G16 A13 T20 A4
Section 2 - Page 12 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
002591 NOD.B10Sn-H2b/J T103 T95 T97 G101 A101 A106 T105 G107 A102 T106 C8 A2 C6 4 H2b
002609 B6.129P2-Nos2tm1Lau/J C4 T3 T3 G4 A0 A4 T4 G4 G4 T4
002620 B6.129S2-Tnfrsf1btm1Mwm/J C4 T4 T4 G4 A4 A4 T4 G4 G4 T4
002633 B6;129S4-Nos1tm1Plh/J C6 G4 T4 G6 A6 A6 T6 G6 G6 C2,T4
002650 B6.129S2-Il6tm1Kopf/J C4 T4 T4 G4 A4 A4 T4 G4 G4 T4
002665 B6.129S2-Cd8atm1Mak/J C4 T4 T4 G4 A4 A4 T4 G4 G4 T4
002666 B6.129S2-Cd28tm1Mak/J C11 T12 T11 G11 A12 A12 T12 G11 G12 T12
002684 B6.129P2-Nos3tm1Unc/J C12 T10 T4 G14 A7 A14 T13 G7 G14 T13
002692 B6.129S1-Il12atm1Jm/J C5 T5 T4 G4 A4 A5 T5 G5 G5 T5
002693 B6.129S1-Il12btm1Jm/J C4 T4 T4 G4 A4 A4 T4 G4 G4 T4
002713 B6;129S-Oxttm1Wsy/J C1 T1 T1 A/G1 A1 A1 T1 G1 G1 C1
002719 B6.129S4-Wt1tm1Jae/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
002726 B6SJL-Tg(SOD1-G93A)1Gur/J C3,C/T3,
T6
G4,G/T4,
T2T14 G15 A14
A3,A/G7,
G3
C3,C/T3,
T4G13 G15 T15 C/T5
Section 2 - Page 13 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
002760 C57BLKS/J-Npc1spm/J C1 T1 T1 G1 A1 A1 C1 G1 G1 C1
002761 B10.Cg-Tg(TcrAND)53Hed/J T4 T4 T4 G4 A4 A4 T4 G4 G4 T4
002770 B6.129S2-Cd40lgtm1Imx/J C4 T4 T4 G4 A4 A4 T4 G4 G4 T4
002777 B6.129S2-Adra2atm1Lel/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
002782 B6;129P2-Ccr5tm1Kuz/J C2 G3 T2 G3 A0 A3 T3 G3 G3 T3
002810 B6CBA-Tg(HDexon1)62Gpb/1J C/T4,T3G1,G/T10,
T2T19 A/G3,G1
A11,A/T5,
T1A3,A/G12 C/T2,T7 G24 A2,G10 C/T7,T12
002818 B6.129-Tnfrsf1atm1Mak/J C3 T3 T3 G3 A0 A3 T3 G3 G3 T3
002828 C.129S2-Stat6tm1Gru/J T8 G8 T8 G8 T8 A8 C8 A8 A8 T8
002835 C57BL/6-RelbTg(H2-K1/GH1)106Bri/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
002849 B6;129P-Nfkb1tm1Bal/J C4 T4 T4 G3 T0 A4 T4 G3 G5 T4
002911 B6;129X1-Dsg3tm1Stan/J C1 T1 T1 A1 A/T1 A1 T1 G1 G1 C1
002915 B6;129S2-Seletm1Hyn/J C1 G/T1 T1 A/G1 A/T1 A1 T1 G1 G1 T1
002928 B6.129P2-Cd40tm1Kik/J C3 T2 T3 G3 A0 A3 T2 G2 G3 T3
Section 2 - Page 14 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
002930 C.C3-Tlr4Lps-d/J T13 G13 T12 G13 T10 A12 C13 A13 A10 T12
002944 B6.129S2-Tap1tm1Arp/J C4 T4 T4 G4 A4 A4 G4 G4 T4
002983 MRL.CBAJms-Faslpr-cg/J T4 G5 T3 A4 T4 G4 C5 G5 G4 T5
003008 B6;129S6-Tnftm1Gkl/J C17 T17 T17 A14,A/G1A7,A/T2,
T4A17 T17 G15 G16 T17
003011 SJL/J-Slc9a1swe/J T2 G2 T2 G2 A2 G2 C2 G2 G2 T2 C1
003052 CBcNO7A/LtJ T1 T1 T1 A1 T G1 C1 G1 A1 T1
003076 NMRI/Gat-Tg(MGMT)3Bec/J C1 T1 T1 A1 A1 T1 G1 G1 T1
003082 129S1/SvImJ-Bcl2tm1Mpin/J C1 G1 T1 A1 T1 A1 T1 G1 G1 C1
003115 STOCK Tg(ACTB-EGFP)B5Nagy/J C2,T1 T3 T3 A/G1,G2 A1,A/T2 A2,A/G1 C/T1,T2 G3 A/G2,G1 T3
003145 C.129S7(B6)-Rag1tm1Mom/J T25 G20 T11 G19 T12 A21 C25 A11 A12 T24
003153 WLC.C-H2d.GR-Mtv2/MorJ C1 G1 G1 A1 A1 G1 C1 G1 G1 C1
003183 B10.D2-Tg(Igh2k3-83)1Nemz/J T1 T1 T1 G1 A1 A1 C1 G1 G1 T1
003198 STOCK Tg(huS100B)5Daoh/J T1 T1 T1 G1 A1 G1 C1 G1 G1 T1
Section 2 - Page 15 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
003200 B10.PL-H2uH2-T18a/(73NS)Sn-Tg(TCRB)C14Jg/J T1 T1 T1 G1 A1 G1 C1 G1 G1 T1
003208 STOCK Tg(DR4)1Jae/J C2 T0 T0 G2 T0 A2 T2 G0 G2 C2
003243 B6;129S-Tnfrsf1atm1Imx Tnfrsf1btm1Imx/J C6 T5 T6 G6 A6 A6 T6 G6 G6 T6
003257 FVB/N-Tg(GFAPGFP)14Mes/J T2 G2 T2 G2 A2 G2 C2 G2 A2 C2
003288 B6.129S7-Ifngr1tm1Agt/J C12 T6 T11 G11 A11 A12 T12 G11 G12 T12
003291 C57BL/6-Tg(ACTB-EGFP)1Osb/J C13 T10 T11 G13 A15 A15 T16 G15 G16 T14 T6
003297 FVB;129-Adatm1Mw
Tg(PLFSADA)2465Rkmb/J C1 G1 T1 A/G1 A1 T1 G1 A/G1 C1
003300 B6.NOD-(D17Mit21-D17Mit10)/LtJ C72 T66 T60 G74 A69 G75 C75 G67 G75 T T1 *4 H2g
003303 C.Cg-Tg(DO11.10)10Dlo/J T6 G4 T6 G6 T5 A6 C6 A4 G6 T6
003314 FVB/N-Tg(Ella-cre)C5379Lmgd/J T2 G2 T2 G2 A2 G2 C2 G2 A2 C2
003375 C3B6-Tg(APP695)3Dbo/J C3,C/T1 G/T2,T2 T4 A1,A/G3 A4 A4 T4 G4 G4 T4
003451 129-Smad3tm1Par/J C4 G5 T5 A5 T5 A5 T5 G5 G5 C5
003453 STOCK Hdhtm2Mem/J T3 T3 T3 A3 A3 G3 C3 G3 A3 T3
Section 2 - Page 16 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
003462 B6.129S1-Thrbtm1Df/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
003466 B6;D2-Tg(Sycp1-cre)4Min/J C1 T1 T1 A/G1 A/T1 A1 C/T1 G1 G1 C1
003474 B6.129S4-Gt(ROSA)26 Sortm1Sor/J C15 T10 T7 A13,G2 A6 A14 T12 G7 G13 T15
003475 C57BL/6-Tg(HLA-A2.1)1Enge/J C12 T6 T12 G12 A12 A12 T12 G12 G12 T12
003478 C.129P2-Cbx2tm1Cim/J T1 G1 T1 G1 T1 A1 C1 A1 A1 T1
003504 B6;129-Gt(ROSA)26Sortm1Sho/J C2 T2 T2 G2 A2 A2 T2 G2 G2 T2
003523 B6.ROP/Le-Os/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
003548 C57BL/6-Ins2Akita/J C14 T7 T12 G7 A12 A14 T12 G9 G10 T13
003552 B6129-Tg(Wap-cre)11738Mam/J C/T3 G2,G/T1 T3 G3 A/T2 A/G3 C/T3 G3 A/G3 C2,T1
003554 B6;SJL-Tg(Col2a1-cre)1Bhr/J C/T1 G/T1 T1 G1 A1 A1 T1 G1 G1 T1
003558 B6.129-Grm5tm1Rod/J C3 T3 T3 G3 A2 A3 T3 G3 G3 T3
003573 B6.Cg-Tg(Ins2-cre)25Mgn/J C2 T2 T2 G2 A0 A2 T2 G2 G2 T2
003580 129S4/SvJae-Pparatm1Gonz/J C12 G11 T10 A12 T9 A12 T11 G11 G11 C12
Section 2 - Page 17 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
003610 B6.129S4-Cd80tm1ShrCd86tm2Shr/J C12 T10 T9 G12 A10 A12 T12 G11 G12 T12
003612 B6C3Fe a/a-Trak1hyrt/J T1 G1 T1 A1 A1 G1 C1 G1 G1 T1 C/T1
003641 B6.129S4-C3tm1Crr/J C4G2,T/G1,
T1T4 G5 A4 A5 T4 G4 G5 T5
003648 C3Sn.BLiA-Pde6b+/Dn T10 G12 T11 A11 A12 G11 C12 G12 G12 T12 C12
003658 STOCK Tg(TIE2GFP)287Sato/J T12 G12 T12 G12 A12 G12 C12 G12 A11,A/G1 C11
003741 B6D2-Tg(Prnp-MAPT)43Vle/J C/T2 T2 T2 G2 A2 A2 C1,C/T1 G2 G2 C1,T1
003770 B6.129X1-Trpv1tm1Jul/J C4 T4 T4 G4 A3 A4 T4 G4 G4 T4
003787 B6cC3-1/KccJ T1 T1 T1 G1 A1 A1 T1 G1 G1 T1
003829 STOCK Tg(Wnt1-cre)11Rth Tg(Wnt1-GAL4)11Rth/J C2 T2 T2 A2 G2 C2 G2 A2 T2 C1
003831 C57BL/6-Tg(TcraTcrb)1100Mjb/J C4 T4 T4 G4 A3 A4 T4 G4 G4 T4
003843 NOD.Cg-PrkdcscidTg(Ins2-GAD2)1Lt/LtJ T2 T3 T3 G3 A2 G3 C3 G3 A3 T3
003897 DBA/1-Abca1tm1Jdm/J T2 T2 T2 A2 T2 G2 C2 G2 G2 C2
003899 STOCK Cd44tm1Hbg/J C13 T9 A2,G12 A10 A16 T16 G8 G14 T16
Section 2 - Page 18 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
003916 B6(Cg)-Col2a1sedc/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
004064 FVB/N-Morc1Tg(Tyr)1Az/J T1 G1 T1 G1 A1 G1 C1 G1 A1 C1
004077 B6;129-Gt(ROSA)26Sortm2Sho/J C11 G11 T8 A11 A7,T1 A11 T11 G11 G11 C7,T4
004103 B6.Cg-Tac1tm1Bbm/J C2 T2 T2 G2 A2 A2 T2 G2 G2 T2
004104 FVB.Cg-Mmp9tm1Tvu/J T12 G12 T12 G12 A12 G12 C12 G12 A12 C12
004165 B6.129X-Ephx2tm1Gonz/J C1 T1 T1 G1 A1 A1 T1 G1 A/G1 T1
004178 B6.Cg-Tg(ACTB-Bgeo/GFP)21Lbe/J C1 T0 T1 G1 A1 A1 T1 G1 G1 T1
004191 B6.Cg-Tg(HLA-A/H2-D)2Enge/J C3 T3 T2 G3 A3 A3 T3 G3 G3 T3
004194 C57BL/6-Tg(TcraTcrb)425Cbn/J C2 T0 T2 G2 A2 A2 T2 G2 G2 T2
004223 CHa.SWV(C3Fe)-Mbpshi/J T1 G1 T1 G1 T A1 C1 A1 T1
004234 B6;129S-Fgfr3tm1DorJ C1 T1 T1 A/G1 A1 A1 T1 G1 G1 T1
004288 129X1-Smotm1Amc/J C1 G1 T1 A1 T1 A1 T1 G1 A/G1 C1
004290 129-Ihhtm1Amc/J C2 G2 T2 A2 T2 A2 T2 G2 A/G1,G1 C2
Section 2 - Page 19 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
004337 129.Cg-Foxg1tm1(cre)Skm/J C2 G2 T2 A2 T2 A2 T2 G2 A2 C2
004346 NOD.Cg-Prkdcscid
Tg(Ins2-CD80)3B7Flv/DvsJ T1 T1 T1 G1 A1 G1 C1 G1 A1 T1
004353 C57BL/6-Tg(UBC-GFP)30Scha/J C6 T6 T6 G6 A6 A6 T6 G6 G6 T6 C2
004382 C57BL/6J-Chr 4A/J/NaJ C12 T12 T9 G13 A12 A12 T13 G12 G13 T13 T11 G1
004388 C57BL/6J-Chr 10A/J/NaJ C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
004391 C57BL/6J-Chr 13A/J/NaJ T1 G1 T1 G1 A1 A1 T1 G1 G1 T1
004392 C57BL/6J-Chr 14A/J/NaJ C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
004393 C57BL/6J-Chr15A/J/NaJ C19 T19 T19 G20 A21 A20 T20 G20 G21 T21
004395 C57BL/6J-Chr 17A/J/NaJ C18 T17 T17 G18 A17 G18 C18 G18 G18 T18
004397 C57BL/6J-Chr 19A/J/NaJ C9 T9 T9 G9 A9 A9 T8 G9 A9 T9
004399 C57BL/6J-Chr YA/J/NaJ C2 T2 T2 G2 A2 A1 T2 G2 G2 T2 T2
004421 B6;129-Irs2tm1Mfw/J C3 G/T3 T3 A2,G1 A/T2 A3 T3 G3 G3 C3
004434 B6.129S4-Ccl2tm1Rol/J C15 T14 T12 G12 A11 A14 T14 G11 G15 T15
Section 2 - Page 20 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
004456 NONcNZO10/LtJ T282 G247 T204 G287 A291 G282 T282 G270 A272 C294 C37
004472 C57BL/6J-nmf67/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
004483 NOD.NON-Thy1a/1LtJ T76 T59 T59 G70 A67 G76 C70 G67 A73 T76 * 4 H2g 4Thy1a
004584 B6.129-Ppargtm2Rev/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
004585 STOCK Cav1tm1Mls/J C12 G12 T8 G11 A4,T4 A12 T12 G12 G12 C12
004596 B6;129S1-Smarcb1tm3ShoJ C2 T/G2 T2 A/G2 A1 A2 T2 G2 A2 T2
004597 C;129S4-Ptentm1Hwu/J T3 G3 T3 A/G2 A/T2,T1 A3 C2,C/T1 A3 A2,G1 C1,T2
004600 FVB-Tg(GFAP-cre)25Mes/J T2 G1 T2 G2 A2 G2 C2 G2 A2 C2
004601 B6CBA-Tg(HDexon1)62Gbp/2J C/T1 G/T1 T1 T1 C/T1 G1 A/G1 C1
004606 NOD.Cg-PrkdcscidH2-Ab1tm1Doi
Tg(HLA-DQA1,HLA-DQB1)1Dv/SzJ T1 T1 T1 G1 A1 A1 T1 G1 A1 T1
004621 B6.129S1-Il11ra1tm1Wehi/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
004623 STOCK Tg(Fos-lacZ)34Efu/J T8 T8 T7 G8 T2 A1,G7 C7 G6 A1,G4 T9 C5
004631B6.Cg-Tg(GFAP-APOE4)1Hol
Apoetm1Unc/J C1 T1 G1 A1 A1 G1 T1
Section 2 - Page 21 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
004654 B6;CBA-Tg(Pou5f1-EGFP)2Mnn/J T2 G2 T2 A2 T2 G2 C2 G2 G2 T2
004657 B6.129P2-Icosltm1Mak/J C2 T1 T2 G2 A2 A2 T2 G2 G2 T2
004659 B6.Cg-Tg(TIE2GFP)287Sato/1J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1 3 H2b
004665 B6.129X1(FVB)-Hnf4atm1.1Gonz/J C1 T1 T1 G1 A/T1 A1 T1 G1 G1 T1
004673 NOD.129(B6)-Rag1tm1MomCd80tm1Shr/JbsJ T1 G1 T1 G1 A1 A1 T1 G1 A1 T1
004688 NOD.CB17 Prkdcscid/J-Fmn1ld-3J/J T1 T1 T1 G1 A1 G1 C1 G1 A1 T1
004692 STOCK Tg(Hoxb7-cre)13Amc/J C1,C/T1 T2 T2 G2 A2 A2 T2 G2 A/G1,G1 T2
004714 B6.129-Bace1tm1Pcw/J C1 T1 T1 G1 A0 A1 T1 G1 G1 T1
004715 B6;129S1-Wnt7atm1Amc/J C/T2 G/T1 T2 G2 T2 G2 C2 G2 G2 T2
004743 B6.129S2-Airetm1.1Doi/J C3 T2 T3 G3 A3 A3 T3 G3 G3 T3
004745 B6.129P2-Esr2tm1Unc/J C2 T2 T2 G2 A2 A2 T2 G2 G1 T2
004753 B6.Cg-Tg(Il1rn)1Dih/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
004754 B6.129S-Il1rntm1Dih/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
Section 2 - Page 22 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
004770 SW.B6 Soab/J T17 G19 T15 G19 A19 G18 C18 G18 G18 C18 C1
004779 STOCK Mapttm1(EGFP)Klt/J C2 T1 T2 G2 A1,A/T1 A/G2 C/T2 G2 G2 T2
004782 STOCK Tg(KRT14-cre)1Amc/J C1,T1 T2 T2 A/G1,G1 A1,T1 A1,G1 C1,T1 G2 G2 T2
004804 B10.BR-H2k H2-T18a/SgSnJJrep T14 T14 T13 G13 A14 G14 C15 G14 G14 T15 4 H2k
004808 STOCK Mapttm1(EGFP)Klt
Tg(MAPT)8cPdav/J C1 T1 T1 G1 A1 G1 C1 G1 G1 T1
004816 C57BL/6J-nmf161/J C3 T2 T3 G3 A3 A3 T3 G3 G3 T2
004818 C57BL/6J-nmf172/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
004821 C57BL/6J-Nmf193/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
004828 FVB.129P2-Pde6b+Tyrc-ch/AntJ T2 G2 T2 G2 A2 G2 C2 G2 A2 C2
004830 C57BL/6J-nmf206/J C1 T1 T1 G1 A1 A1 G1 G1 T1
004831 C57BL/6J-nmf219/J C2 T2 T2 G2 A2 A2 T2 G2 G2 T2
004832 C57BL/6J-Nmf220/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
004833 B6.129-Ptprqtm2Bow/J C2 T2 T2 G2 A2 A1 T2 G2 G2 T2
Section 2 - Page 23 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
004847 B6;129-Gt(ROSA)26Sortm1(cre/Esr1)Nat/J C2 G/T1 T2 G2 A1,A/T1 A2 T2 G2 G2 T2
004851 C57BL/6J-Nmf128/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
004863 B6.129X1-Snap25tm1Mcw/J C2 T1 T2 G2 A2 A2 T2 G2 G2 T2
004912 B6.129P2-Akt1tm1Mbb/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
004935 C57BL/6J-ct2J/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
004936 B6.Cg-Spp1tm1Blh/J C4 T3 T4 G4 A4 A4 T4 G4 G4 T4
004937 NOD.Cg-Tg(Ins2-tTA)1Doi/DoiJ T1 T1 T1 G1 A1 G1 C1 G1 A1 T1
004938 FVB-Tg(YAC128)53Hay/J T2 G2 T2 G2 A2 G2 C2 G1 A2 C2 C2
004950 B6.129S1-Syt7tm1Nan/J C2 T2 T2 G2 A2 A2 T2 G2 G2 T2
004964 STOCK Sftpa1tm1Kor/J T2 G2 T2 G2 A2 G1 C1 G2 A1 T2 C2
004965 C3H/HeJ-Clic5-jbg/J T1 G1 T1 A1 A1 G1 C1 G1 G1 T1
004966 B6;CBA-Tg(Acrv1-EGFP)2727Redd/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
004971 B6.FVB-Tg(CD46)2Gsv/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
Section 2 - Page 24 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
004999 B6.129S4-Ccr2tm1Ifc/J C3 T3 T3 G3 A3 A3 T3 G3 G3 T3
005000 B6.Cg-Tg(F2RL1)1Mslb/J C1 T1 T1 A/G1 A1 A1 T1 G1 G1 T1
005007 C57BL/6J-Nmf191/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005008 C57BL/6J-nmf192/J C6 T6 T6 G6 A6 A6 T6 G6 G6 T6
005009 C57BL/6J-nmf195/J C4 T3 T4 G4 A4 A4 T4 G4 G4 T4
005010 C57BL/6J-nmf242J C4 T3 T4 G4 A4 A4 T4 G3 G4 T4
005012 A.B6 Tyr+-Myo5ad-131J/J T2 G1 T2 G2 A2 G2 C2 A2 A2 T2
005013 C57BL/6J-GarsNmf249/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005014 C57BL/6J-Nox3het-4J/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005016 CByJ;B6-Cdh23v-10J/J C/T1 G1 T1 G1 A/T1 A1 C1 A1 A1 T1 C1
005018 NOD.Cg-Tg(Igk-C/Igk-V125)1Jwt/JwtJ T1 T1 T1 G1 A1 G1 C1 G1 A1 T1
005019 NOD.Cg-Tg(Igh-6/Igh-V125)2Jwt/JwtJ T2 T2 T2 G2 A2 G2 C2 G2 A2 T2
005020 NOD-Tg(Igh-6/Igh-V281)3Jwt/JwtJ T1 T1 T1 G1 A1 G1 C1 G1 A1 T1
Section 2 - Page 25 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
005023 B6.Cg-Thy1a/Cy Tg(TcraTcrb)8Rest/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005024 FVB.Cg-Tg(SMN2)89Ahmb Smn1tm1Msd/J C/T2 G2 T2 G2 T1 G1,A/G1 C1,C/T1 G2 A2 C2
005025FVB.Cg-Tg(SMN2*delta7)4299Ahmb
Tg(SMN2)89Ahmb Smn1tm1Msd/J C2 T2 T2 G2 A2 G2 C2 G2 A2 C2
005027 B6.129S2-Il10rbtm1Agt/J C1 T1 T1 G1 A/T1 A1 T1 G1 G1 T1
005035 NOD.129S2(B6)-Ins1tm1Jja/GseJ T2 T2 T2 G2 A2 G2 C2 G2 A2 T2
005037 C57BL/6J-Ticam1Lps2/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005039 B6.129X1-Adra1atm1Pcs/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005043 B6;129-nmf166/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005047 C57BL/6J-Rorasg-3J/J C2 T2 G2 A2 A2 T2 G2 G2 T2
005048 B6;129-nmf291/J C2 T1,G/T1 T2 G2 A2 A2 T2 G2 G2 T2
005050 B6;CByJ-Cacna2d2du-3J/J T1 G1 T1 G1 T1 A1 C1 A1 G1 T1
005051 B6.Cg-KitW-sh/HNihrJaeBsmJ C1 G/T1 T1 G1 A1 A1 T1 G1 G1 T1
005052 PN/nBSwUmabJ T1 G1 T1 G1 A1 G1 C1 G1 G1 C1
Section 2 - Page 26 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
005058 FVB.Cg-Tg(SMN2)2Hung Smn1tm1Hung/J T1 G1 T1 G1 A1 G1 C1 G1 A1 C1
005064 B6;129-Slc30a3tm1Rpa/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005067 NZL/LtJ C12 G11 T10 G11 T11 G12 C10 G12 G8 T12
005069 B6.Cg-Tg(Fabp4-cre)1Rev/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005078 NOD.Cg-Il1r1tm1Roml/HetJ T1 T1 T1 G1 A1 G1 C1 G1 A1 T1
005080 NOD.129-Ica1tm1Mdos/MdosJ T3 T3 T2 G3 A3 G3 C3 G3 A3 T3
005089 B.Cg m +/+ Leprdb-Qkqk-2J/J C1 T1 T1 G1 A1 A1 C/T1 G1 G1 C1
005090 B6.129P2-Ccl5tm1Hso/J C2 T2 T2 G2 A2 A2 T2 G2 G2 T2
005091 129S-Pnpla6tm1Blw/J C2 G2 T2 A2 T2 A2 T2 G2 G2 C2
005095 C57BL/6J-nmf240/J C1 T1 T1 A1 A1 T1 G1 T1
005096 C57BL/6J-nmf247/J C4 T3 T4 G4 A4 A4 T4 G3 G4 T4
005098 A.B6 Tyr+-Spnb4qv-7J/J T2 G2 T2 G1 A2 G2 C2 A2 A2 T2
005104 STOCK Tg(tetO-HIST1H2BJ/GFP)47Efu/J T1 G/T1 T1 G1 A1 G1 C1 G1 A/G1 T1
Section 2 - Page 27 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
005114 NOD.FVB-Tg(Ins1-Cat,Tyr)25Pne/PneJ T1 T1 T1 G1 A1 G1 C1 G1 A1 T1
005115 NOD.FVB-Tg(INS-MT2A,Tyr)1Pne/PneJ T2 T2 T2 G2 A2 G2 C2 G2 A2 T2 C1
005125FVB.129S6(B6)-
Gt(ROSA)26Sortm1(Luc)Kael/J T2 G2 T2 G2 A2 G2 C2 G2 A2 C2
005133 B10.D1-H2q/SgJ-shmy2J/J C1 T1 T1 G1 A1 G1 C1 G1 G1 T1
005134 STOCK Disp1tm2Amc/J C1,C/T1 G/T1,T1 T2 A1,A/G1 A1,T1 A2 T2 G2 G2 T1
005143 C3.B6-Tg(Fabp1-Ccnd1)4Rdb/J T1 G1 T1 A1 A1 G1 C1 G1 G1 T1
005145 C57BL/6-Tg(ACTB-OVA)916Jen/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005152 B6.D2-(D2Mit1-rs3681655)/LusJ C1 T1 T1 G1 A1 T1 G1 G1 T1
005155 B6.D2-(D3Mit149-rs3726528)/LusJ C2 T2 T2 G2 A2 A2 T2 G2 G2 T2 T1
005156 B6.D2-(rs3653796-rs3022971)/LusJ C1 T1 T1 G1 A1 A1 T1 G1 G1
005166 B6.D2-(D6Mit86-D6Mit198)/LusJ C1 T2 T2 G2 A/T2 A2 T2 G2 G2 T2
005167 B6.D2-(D6Mit149-D6Mit15)/LusJ C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005173 B6.D2-(D8Mit256-D8Mit42)/LusJ C T1 T1 G1 A1 A1 T1 G1 G1 T1 G1
Section 2 - Page 28 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
005174 B6.D2-(D8Mit318-D8Mit56)/LusJ C14 T15 T12 G15 A15 A15 T15 G15 G15 T15 G15
005187 B6.D2-(D13Mit79-D13Mit198)/LusJ T1 T1 T1 G1 A1 T1 G1 G1 T1
005188 B6.D2-(D13Mit198-D13Mit314)/LusJ C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005206 B6.D2-(D18Mit33-D18Mit144)/LusJ C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005213 129-Slc10a2tm1Pda/J C2 G2 T2 A2 T2 A2 T2 G2 G2 C2
005226 BALB/cJ-Mbpshi-J/J T1 G1 T1 G1 T1 A1 C1 A1 A1 T1
005236 B6.Cg-Tg(TcraY1,TcrbY1)416Tev/J C2 T2 T2 G2 A2 A2 T2 G2 G2 T2
005245 B6.129( C )-Nrp1tm1Ddg/J C1 G/T1 A/G1 A/T1 A1 T1 G1 G1 T1
005249 B6;SJL-Tg(Krt1-15-cre/PGR)22Cot/J C1 G/T1 T1 G1 A1 A/G1 C/T1 G1 G1 T1
005253 C57BL/6J-Clcn1adr-mto6J/J C3 T1 T3 G3 A3 A3 T3 G3 G3 T3
005255 C57BL/6J-nmf329/J C4 T4 T4 G4 A4 A4 T4 G4 G4 T4
005257 B6.129S7-Itgaltm1Bll/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005258 B6.129S7-Itgadtm1Bll/J C1 T1 T1 G1 A1 T1 G1 G1 T1
Section 2 - Page 29 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
005260 C57BL/6J-Chr 5PWD/Ph/ForeJ C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005261 C57BL/6J-Chr 6PWD/Ph/ForeJ C3 T3 T3 G3 A3 A3 T3 G3 G3 T3 T1
005263 C57BL/6J-Chr 12PWD/Ph/ForeJ C2 T2 T2 G2 A2 A2 T2 G2 G2 T2
005264 C57BL/6J-Chr 14 PWD/Ph/ForeJ C1 T1 G1 G1 A1 A1 T1 G1 G1 T1
005265 C57BL/6J-Chr 15 PWD/Ph/ForeJ C1 T1 T1 A1 A1 A1 T1 G1 G1 T1
005266 C57BL/6J-Chr 16 PWD/Ph/ForeJ C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005268 C57BL/6J-Chr 18 PWD/Ph/ForeJ C1 T1 T1 G1 A1 A1 T1 A1 G1 T1
005269 C57BL/6J-Chr 19 PWD/Ph/ForeJ C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005270 C57BL/6J-Chr Y PWD/Ph/ForeJ C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005271 B6(129X1)-rcw2J/J C10 T10 T10 G10 A10 A9 T10 G10 G10 T10
005292 B6(129S2)-jc2J/J C1 T1 T1 G1 A1 A0 T1 G1 G1 T1 T1
005298 C57BL/6J-nmf313/J C6 T6 T6 G6 A6 A6 T6 G6 G6 T6
005304 C57BL/6NJ C80 T79 T76 G79 A79 A79 T79 G79 G80 T80 C67 C14
Section 2 - Page 30 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
005306 NODCaj.Cg-Igh-6tm1Cgn
Tg(Igh-VB1-8/Igh-6m)1Mjsk/FswJ T1 T1 T1 G1 A1 G1 C1 G1 A1 T1 C1
005307 CBy.Cg-Thy1a
Tg(TcraCl4,TcrbCl4)1Shrm/ShrmJ T2 G2 T2 G2 T2 A2 C2 A2 A2 T2
005309 NODCaj.Cg-Igh-6tm1Cgn
Tg(Igh-VB1-8/Igh-6)2Mjsk/FswJ T3 T3 T3 G3 A3 G3 C3 G3 A3 T3
005313 NOD.B6-(D1Mit180-D1Mit143) (D11Mit38-D11Mit41)/DelJ T1 T1 T1 G1 A1 G1 C1 G1 A1 T1
005314 TALLYHO/JngJ T2 T2 G2 A2 G2 C2 G2 A2 T2
005315 B6;C3H-Tg(Scgb1a1-Scnn1b)6608Bouc/J C1 T1 T1 A/G1 A1 A/G1 C/T1 G1 G1 T1
005316 C.Cg-Fv4r/HmJ T1 G1 T1 G1 T1 A1 C1 A1 A1 T1
005319 B6.129-Cdh1tm2Kem/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005329 C57BL/6J-nmf318/J C4 T3 T4 G4 A4 A4 T4 G4 G4 T4
005354 RB156Bnr/Ei-rul-Gulosfx-2J/J T1 G1 T1 G1 T1 G1 C1 G1 G1 T1
005357 B6.129-Sema3ftm1.1Ddg/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005358 129S6/SvEvTac-Car3tm1Gkim/J C1 G1 T1 A1 T1 A1 T1 G1 G1 C1
005359 B6.Cg-Tg(Camk2a-cre)T29-1Stl/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
Section 2 - Page 31 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
005383 B6.129S6-Dp(16Cbr1-ORF9)1Rhr/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005384 STOCK Numbtm1Zili Numb1tm1Zili/J C1 T1 T1 G1 T1 A1 T1 G1 G1 T1
005408 C;129P2-Npy1rtm1Pern/J C/T2 G2 T2 G2 T2 A2 C2 A/G1,G1 A2 C1,T1
005417 C;129P2-Npy2rtm1Pern/J C1,C/T1 G2 T2 G2 T2 A2 C2 A2 A2 T2
005419 C;129P2-Npy5rtm1Pern/J C1,C/T1 G2 T2 A/G2 T1 A2 C/T1,T1 A/G2 A2 C2
005423 B6.129S-Terttm1Yjc/J C1 T1 T1 G1 A1 T1 G1 G1 T1
005427 B6.129P2-Ccr5tm1Kuz/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005429 B6.129S-Gpamtm1Rcol/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005438 STOCK Tg(ACTB-Bgeo,-DsRed*MST)1Nagy/J C1,C/T1 G/T1,T1 T2 G2 A2 A/G2 C/T2 G2 G2 T2
005439 B6.129S-Mecp2tm1Hzo/J C1 T1 T1 G1 A1 A1 T1 G1 G1 C1
005441 STOCK Tg(ACTB-DsRed*MST)1Nagy/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1 C1
005445 A.B6 Tyr+-nmf333/J T1 G1 T1 G1 A1 G1 C1 A1 A1 T1
005447 C57BL/6J-Grid2ho-16J/J C3 T2 T3 G3 A3 A3 T3 G3 G3 T3
Section 2 - Page 32 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
005448 C57BL/6J-nmf347/J C2 T2 T2 G2 A2 A2 T2 G2 G2 T2
005449 C57BL/6J-Spnb4qv-8J/J C4 T3 T4 G4 A4 A4 T4 G4 G4 T4
005451 C57BL/6J-nmf391/J C2 T2 T2 G2 A2 A2 T2 G2 G2 T1
005463 B6;CByJ-Scn8a7J/J T1 G1 T1 G1 T1 A1 C1 A1 A/G1 T1
005465 C57BL/6J-Clcn1adr-mto7J/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005468 C57BL/6J-Myo7ash1-11J/J C4 T4 T4 G4 A4 A4 T4 G4 G4 T4
005469 C57BL/6J-nmf380/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005501 C(Cg)-Agtpbp1pcd-7J/J T1 G1 T1 G1 T1 A1 C1 A1 A1 T1
005512 NOD.B6-Tg(HLA-A2.1)1Enge/DvsJ T1 T1 T1 G1 G1 C1 G1 A1 T1
005515 FVB-Tg(ITGAM-DTR/EGFP)34Lan/J T1 G1 T1 G1 A1 G1 C1 G1 A1 C1
005518 C57BL/6J-Chr 3PWD/Ph/ForeJ C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005520 B6;CByJ-Cacna1atg-6J/J C/T2,T1 G3 T3 G3 T3 A3 C3 A3 A2 T3
005521 C57BL/6J-rcw3J/J C3 T3 T3 G3 A3 A3 T3 G3 G3 T3
Section 2 - Page 33 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
005522 NOD-Tg(Ins2*Y16A)1Ell/GseJ T1 T1 T1 G1 A1 G1 C1 G1 A1 T1
005528 B6.129P-Ly75tm1Mnz/J C2 T2 T2 G2 A2 A2 T2 G2 G2 T2
005530 B6.129S-Ddit3tm1Dron/J C1 T1 T1 G1 A1 T1 G1 G1 T1
005533 C.Cg-Tg(Ins2-HA)165Bri/ShrmJ T1 G1 T1 G1 T1 A1 C1 A1 A1 T1
005535 B6.129S7-Del(11Cops3-Zfp179)1Jrl/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005536 B6.129S7-Dp(11Cops3-Zfp179)1Jrl/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005545 C57BL/6J-mtA/J/NaJ C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005546 A/J-Chr YC57BL/6J/NaJ T1 G1 T1 G1 A1 G1 C1 A1 A1 T1
005547 C57BL/6J-Chr Y129S1/SvImJ/NaJ C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005548 129S1/SvImJ-Chr YC57BL/6J/NaJ C1 G1 T1 A1 T1 G1 G1 C1
005549 B6;129-Pax3tm1(cre)Joe/J C2 G/T1,T1 T2 G2 A2 A2 T2 G2 G2 T2
005550 STOCK Rac1tm1Djk/J C/T1 G/T T1 A/G1 A/T1 A1 T1 G1 G1 T1
005557 NOD.Cg-PrkdcscidIl2rgtm1Wjl/SzJ T1 T1 T1 G1 A1 G1 C1 G1 A1 T1
Section 2 - Page 34 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
005560 C57BL/6J-Dstdt-37J/J C2 T2 T2 G2 A2 A2 T2 G2 G2 T2 T2
005561 C57BL/6J-nmf373/J C3 T3 T3 G3 A3 A3 T3 G3 G3 T3
005562 C3Fe(SWV) Mbpshi-Relnrl-5J/J T1 G1 T1 A1 A1 G1 G1 G1 T1
005564 FVB(Cg)-Tg(Ins2-CALM1)26Ove Tg(Cryaa-TAg)1Ove/PneJ T1 G1 T1 G1 A1 G1 C1 G1 A1 C1
005565 B6(V)-chtl2J/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005572 STOCK Gt(ROSA)26Sortm1(rtTA,EGFP)Nagy/J T1 T1 T1 G1 T1 A1 T1 G1 A1 T1 C1
005582 B6.129P-Cx3cr1tm1Litt/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005601 B6.129S-Atxn1tm1Hzo/J C1 G/T1 T1 G1 A1 G1 G1 T1
005620 B6;D2-Tg(S100B-EYFP)1Wjt/J T1 T2 T2 A/G2 T2 A/G2 C/T2 G2 G2 C2
005621 B6;D2-Tg(S100B-EGFP)1Wjt/J C/T1 T1 T1 G1 A1 A1 T1 G1 G1 C1
005627 B6.Cg-Tg(Thy1-YFP/Syp)10Jrs/J C1 T1 G1 A1 A1 T1 G1 G1 T1
005630 B6.Cg-Tg(Thy1-EYFP)15Jrs/J C1 T0 T1 G1 A1 A1 T1 G1 G1 T1
005633 B6;CByJ-Dstdt-38J/JC1,C/T1,
T2
G2,G/T1,
T1T3 G4
A1,A/T2,
T1A4
C1,C/T2,
T1A4 A2,A/G1 T4
Section 2 - Page 35 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
005635 C57BL/6J-Lama2dy-7J/J C3 T3 T3 G3 A3 A3 T3 G3 G3 T3
005638 C57BL/6J-Tmhshscy-2J/J C2 T2 T1 G2 A2 A2 T2 G2 G2 T1
005642 B6.Cg-Clutm1Jakh/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005650 B6129-Tg(Myh6-cre/Esr1)1Jmk/J C1 G1 T1 G1 T1 A1 T1 G1 G1 T1
005654 B6C3-Del(16Cbr1-ORF9)1Rhr/J T1 G1 T1 A1 A/T1 A1 T1 G1 G1 T1
005655 B6.Cg-Tg(Tcra,Tcrb)3Ayr/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005676 STOCK C5ar1tm1Cge/J C1 G/T1 T1 G1 A1 A1 T1 G1 A/G1 T1
005680 STOCK Tsc1tm1Djk/J C/T1 G/T1 T1 G1 A/T1 A1 T1 G1 A/G1 T1
005681 B6.129S-Lipgtm1Tq/J C1 T1 T1 G1 A1 T1 G1 G1 T1
005684 C57BL/6-Ap3b2tm1Bur/J C/T3 T3 T3 G3 A3 A3 T3 G3 G2 T3
005685 NOD.Cg-Tg(Ins2-HA)165Bri/ShrmJ T1 T1 T1 G1 A1 G1 C1 G1 A1 T1
005712 C.129S4-C3ar1tm1Cge/J T2 G2 T2 G2 T2 A2 C2 A2 A2 T2
005715 B6.Cg H2g7- Tg(Ins2-CD80)3B7Flv/LwnJ C1 T1 T1 G1 A1 G1 C1 G1 G1 T1
Section 2 - Page 36 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
005718 C57BL/6J-Grid2ho-17J/J C3 T2 T3 G3 A3 A3 T3 G3 G3 T2
005733 NOD/ShiLt- Tg(Ins2-Fas*I246N)1Ach/AchJ T1 T1 T1 G1 A1 G1 C1 G1 A1 T1 C1
005734 NOD/Lt-Tg(Ins2-rtTA)1Ach/AchJ T1 T1 T1 G1 A1 G1 C1 G1 A1 T1
005736 BKS(Cg)-calre/J C3 T3 T2 G3 A3 A3 C3 G3 G3 C3
005741 C57BL/6J-nmf356/J C2 T2 T2 G2 A2 A2 T2 G2 G2 T2
005744 C57BL/6J-Relnrl-6J/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005748 C57BL/6J-Kcnq1vtg-3J/J C2 T2 T2 G2 A2 A2 T3 G2 G2 T2 T1
005751 B6;CByJ-nmf419/J T3 G3 T3 G3 A1, T1 A3C1,C/T1,
T1A3 A2, A/G1 T3
005762 C57BL/6J-Chr X.1PWD/Ph/ForeJ C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
005853 NOD.Cg-Tg(HLA-A2/H2-K)1Scr/ShrmJ T1 T1 T1 G1 A1 G1 C1 G1 A1 T1
005898 BKS(Cg)-trls/J C4 T4 T4 G4 A4 A4 C4 G4 G4 C4
005962 C57BL/6J-uwl/J C3 T3 T3 G3 A3 A3 T3 G3 G3 T3
006009 C57BL/6J-rcw4J/J C2 T2 T2 G2 A2 A2 T2 G2 G2 T1
Section 2 - Page 37 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
006045 C3HeB/FeJ-Xsl/J T1 G1 T1 A1 A1 G1 C1 G1 G1 T1
006107 C57BL/6J-rslk2J/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
006111 B6(Cg)-Ush1gjs-2J/J C1 T1 T1 G1 A1 A1 T1 G1 G1 T1
006246 A/J-sunk/J T1 G1 T1 G1 A1 G1 C1 A1 A1 T1 C1
006247 C3H/HeJ-servr/J T1 G1 T1 A1 A1 G1 C1 G1 G1 T1
006252 LT/SvEiJ T2 T2 T2 G1 T2 A1 C2 G2 A2 T2
006372 C57BL/6J-Chr 11.3PWD/Ph/ForeJ C1 T1 T1 A1 T1 G1 G1 T1
100002 B6AF1/J C/T12 G/T11 T13 G13 A12 A/G12 C/T11 A/G5 A/G11 T13 4 H2a/b
100003 CAF1/J T19 G18 T19 G19 A/T6 A/G18 C19 A11 A18 T19
100004 C3D2F1/J T4 G/T4 T4 A4 A/T4 A/G4 C4 G4 G4 C/T4
100006 B6D2F1/J C/T21 T31 T32 A/G38 A/T9 A50 C/T25 G33 G48 C/T33
100007 CB6F1/J C/T6 G/T9 T14 G19 A/T11 A20 C/T10 A/G8 A/G12 T20
100008 NZBWF1/J C/T15 T21 T22 G23 T19 A/G19 C22 G20 G24 T24
Section 2 - Page 38 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006This panel of SNPs was selected from public data bases. Typing was done on crude DNA tail preps using using Kbioscience KASPar (www.kbioscience.co.uk) detection system(Petko M. Petkov, Megan A. Cassell, Evelyn E. Sargent, Charles J. Donnelly, Phil Robinson, Victor Crew, Steven Asquith, Raymond Vonder Haar, Michael V. Wiles. Development of a SNP Genotyping Panel for Genetic Monitoring of the Laboratory Mouse. Genomics 83 (2004) 902-911) .
SNP Location (Chromosome-cM or MB placement)
Section 2 13-
8.0
13-
15.3
14-
9.8
15-
14.2
16-
45.9
17-
18.6
1
17-
18.6
2
18-
26.2
19-
13.1
20-
21.9
(X)
*01
-7.1
7
08-
15.2
3
11-
4.40
13-
40.8
9
-- Go to Section 1 SNP Name
-- Go to Explanation of Results
M-6
8896
_151
_1
M-0
5495
_2
M-0
7251
_1
M-0
7646
_1
M-0
1322
_2
M-0
4659
_1
AF0
2786
5_1
M-0
9844
_1
M-0
2162
_1
M-0
5810
_1
01-
0071
6613
5-M
08-
0151
9979
2-M
11-
0043
6750
8-M
13-
0410
1731
7-M
H2
Hc
Thy
1
Stock No. Strain
100009 CByB6F1/J C/T0 G/T0 T0 G4 A/T0 A5 C/T0 A/G0 A/G0 T5
100010 B6C3F1/J C/T16 G/T20 T21 A/G20 A19 A/G21 C/T20 G18 G24 T23
100011 B6CBAF1/J C/T26 G/T29 T42 A/G30 A/T11 A/G31 C/T28 G34 A/G22 C/T22,T16
100012 B6SJLF1/J C/T10 G/T10 T10 G16 A10 A/G16 C/T10 G15 G15 T16
100015 CByD2F1/J T4 G/T4 T2 A/G4 T4 A4 C4 A/G4 A/G1 C/T2,T2
100016 C3FeB6F1/J C/T12 G/T11 T12 A/G10 A14 A/G13 C/T12 G13 G14 T14
100019 CSJLF1/J T4 G4 T3 G4 A/T4 A/G4 C4 A/G4 A/G4 T4
100299 PLSJLF1/J T18 G/T18 T19 G19 A19 G19 C19 G18 A/G19 T19
100409 B6129PF1/J-Aw-J/Aw C7 G/T3 T6 A/G0 A/T5 A7 T6 G6 G6 C/T5
100410 WBB6F1/J-KitW/KitW-v C18 T18 T18 G19 A18 A/G18 C/T18 G19 G19 C15,C/T1
100492 B6129PF1/J C12 G/T12 T12 A/G11 A/T6 A12 T12 G12 G12 C/T5,T7
100903 B6129PF2/J C6 G4,G/T2 T8 A/G5,G1 A/T4,T1 A7 T8 G8 G9C2,C/T2,
T4
101045 B6129SF2/J C1 G1 T1 A1 A1 T1 G1 G1 T1
Section 2 - Page 39 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).
Genetic Quality Control Annual Report
December 1, 2005 - November 30, 2006
-- Go to Section 1
-- Go to Section 2
Explanation of Results
Please Note: The superscript is the number of animals giving that SNP allele.
* Petko M. Petkov, Yueming Ding, Megan A. Cassell, Weidong Zhang, Gunjan Wagner, Evelyn E. Sargent, Steven Asquith, Victor Crew, Kevin A. Johnson, Phil Robinson, Valerie E. Scott, and Michael V. Wiles. An efficient SNP System for Mouse Genome Scanning and Elucidating Strain Relationships. Genome Research (2004) 14:1806-1811.
H2 haplotypes are determined by typing both H2K and H2D with alloantisera using the micromethod of Shiroishi et al [Microbiol. Immunol. 25:1327-1334 (1981)].
* Our antibodies do not distinuish between H2g and H2g7
** SNP M-05782_1 prefers the "T" allele when a heterozygous haplotype is expected.
For more specific information on Genetic Quality Control at The Jackson Laboratory, please visit the Web Site at www.jax.org/jaxmice/geneticquality or contact our Technical Support Service at [email protected].
Explanation of Results - Page 1 | For further information see the Genetic Quality Control web site (www.jax.org/jaxmice/geneticquality) or contact Technical Support Services (email: [email protected]).