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Genetics News• Seminar Monday, Oct 30
John RyanImmunology, asthma
• Printing problems
Topics for today
Phenotypes of strains diploid for lac
Model for positive regulation of lac operon
Experimental test of model
Predict the Lac phenotype
Chromosome Plasmid Phenotype
I+ P+ O+ Z+ Y+ I+ P+ O+ Z+ Y+
ß-galactosidase phenotype I inducible by IPTG C constitutive activity N no activity
Growth Lac+ can grow on lactose Lac- cannot grow on lactose
Predict the Lac phenotype
ß-galactosidase phenotype N no activity (or very low)
- lacZ is deadX
X
X
- lactose
+ lactose
Predict the Lac phenotype
ß-galactosidase phenotype N no activity (or very low)
- lacZ is dead- promoter is dead
X
X
X X X
X
- lactose
+ lactose
Predict the Lac phenotype
ß-galactosidase phenotype N no activity
- lacZ is dead- promoter is dead
I inducible by IPTG - good lacZ, promoter- good lacI- good operator
+
+
- lactose
+ lactose
++
Predict the Lac phenotype
ß-galactosidase phenotype N no activity
- lacZ is dead- promoter is dead
I inducible by IPTG - good lacZ, promoter- good lacI- good operator
C constitutive activity- good lacZ, promoter- bad lacI- OR bad operator
+
+
XX
Predict the Lac phenotype
Growth Lac+ can grow on lactose
- good lacZ - AND good lacY
lacZ+
lacY+
Predict the Lac phenotype
Growth Lac+ can grow on lactose
- good lacZ
Lac- cannot grow on lactose - bad lacZ
- AND good lacY X
lacZ-
X
Predict the Lac phenotype
Growth Lac+ can grow on lactose
- good lacZ
Lac- cannot grow on lactose - bad lacZ
- AND good lacY
- OR bad lacY
X X
lacY-
X
Lac Phenotype: Strategy
Check trans-acting regulatory factors
• Repressor• CAP• RNA polymerase
Check cis-acting regulatory factors
• Promoter• Operator
What’s a “trans-acting” factor?What’s a “cis-acting” factor?SQ8. Does a start codon mutation act in cis or trans?SQ9. Would a promoter mutation act in cis or trans?
Lac Phenotype: Strategy
Check trans-acting regulatory factors
• Repressor• CAP• RNA polymerase
Check cis-acting regulatory factors
• Promoter• Operator
I- P+ O+ Z+ Y+ F’( I+ P+ Oc Z- Y+)
- + + + +
+ + - - +
X
X
X
ß-Gal phenotype? Growth?
Lac Phenotype
I- P+ O+ Z+ Y+ F’( I+ P+ Oc Z- Y+)
-
- -
ß-Gal phenotype?
Without lactose
lacZ repressed
(lacY constitutive)
Lac Phenotype
I- P+ O+ Z+ Y+ F’( I+ P+ Oc Z- Y+)
-
- -
ß-Gal phenotype?
With lactose
lacZ induced
(lacY constitutive)
INDUCIBLE
Growth phenotype?
ß-gal made
Permease made
GROWTH
Positive Regulation of lac operon
glucose lactose other sugars
State
Response
• Avoid other sugars
• Plenty of glucose
• Eat it
Symbol of state• Low cAMP
Positive Regulation of lac operon
lactose other sugars
State
Response
• No glucose
• Eat other sugars
Symbol of state• High cAMP
Positive Regulation
X
Low expression of lac operon
Test of modelWhat happens if...
X X
X
crp-
Positive Regulation
X
X
Test of modelWhat happens if... X
Low expression of lac operon(Why defects lead to low expression?)
Positive Regulation
XX
Test of modelWhat happens if... X
Low expression of lac operon
X
Positive Regulation
Protein Regulation Target Acts on Influenced byLac repressor
CRP
Negative operator lac operon lactose
Positive CRPbinding site
many operons cAMP
Positive RegulationSQ14: Superimpose cAMP & ß-gal on growth curve
When is glucose present?
+ glucose
- glucoseWhen is cAMP present?[cAMP]
When is ß-gal present?
[ß-gal]
Test of Positive Regulation - SQ15
Absence of inducer, ß-gal activity…?Presence of IPTG, ß-gal activity…?Presence of IPTG and glucose, ß-gal activity…?Grown in lactose + glucose, diauxic effect…?
Test of Positive Regulation
From Kimata et al (1997)
SQ16Is diauxic growth
apparent?
SQ17Is appearance of
ß-gal repressed by glucose?
SQ22: How to make biosensor of heavy metals
Red on MacConkey
plates