11
Keywords MAbPac, monoclonal antibody, mAb, reverse phase, biopharmaceutical, protein, proteomics, biomolecules, intact protein The Thermo Scientific MAbPac RP is a reverse phase (RP) liquid chromatography column designed for mAb characterization, including the separation of mAb and variants, light chain (LC) and heavy chain (HC), Fc and Fab fragments, scFc and F(ab') 2 fragments, using LC/UV or LC/MS. The unique column chemistry provides excellent performance under a broad range of pH, temperature, and mobile phase composition. Introduction The monoclonal antibody (mAb) therapeutics market is growing at a rapid rate owing to increased demand for targeted treatments. Therapeutic mAbs are mostly produced from mammalian cells. These biological products are heterogeneous due to post-translational modifications. Additional modifications such as oxidation can be introduced during the manufacturing process. A comprehensive characterization of mAb purity, aggregates, and variants is required for the final biopharmaceutical product approval and subsequent manufacturing processes. There is a growing trend to obtain intact mass information, as well as the glycan profile, in the QC of mAbs using reverse phase chromatography coupling with high resolution mass spectrometry detection. In addition, LC/MS analysis of mAb fragments such as light chain (LC), heavy chain (HC), Fc, and Fab, scFc and F(ab') 2 , Benefits • Superior resolution power for monoclonal antibodies and related substances • High efficiency with low carry-over • Excellent MS compatibility • Wide operating pH range: 0–14 • High temperature stability: up to 110 °C • High throughput High Performance RP Chromatography Column for mAb Analysis MAbPac RP Column PRODUCT SPECIFICATIONS

High Performance RP Chromatography Column for mAb Analysis · biopharmaceutical, protein, proteomics, biomolecules, intact protein The Thermo Scienti˜c™ MAbPac™ RP is a reverse

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Page 1: High Performance RP Chromatography Column for mAb Analysis · biopharmaceutical, protein, proteomics, biomolecules, intact protein The Thermo Scienti˜c™ MAbPac™ RP is a reverse

KeywordsMAbPac, monoclonal antibody, mAb, reverse phase, biopharmaceutical, protein, proteomics, biomolecules, intact protein

The Thermo Scientific™ MAbPac™ RP is a reverse phase (RP) liquid chromatography column designed for mAb characterization, including the separation of mAb and variants, light chain (LC) and heavy chain (HC), Fc and Fab fragments, scFc and F(ab')2 fragments, using LC/UV or LC/MS. The unique column chemistry provides excellent performance under a broad range of pH, temperature, and mobile phase composition.

IntroductionThe monoclonal antibody (mAb) therapeutics market is growing at a rapid rate owing to increased demand for targeted treatments. Therapeutic mAbs are mostly produced from mammalian cells. These biological products are heterogeneous due to post-translational modifications. Additional modifications such as oxidation can be introduced during the manufacturing process. A comprehensive characterization of mAb purity, aggregates, and variants is required for the final biopharmaceutical product approval and subsequent manufacturing processes. There is a growing trend to obtain intact mass information, as well as the glycan profile, in the QC of mAbs using reverse phase chromatography coupling with high resolution mass spectrometry detection. In addition, LC/MS analysis of mAb fragments such as light chain (LC), heavy chain (HC), Fc, and Fab, scFc and F(ab')2,

Benefits

• Superior resolution power for monoclonal antibodies and related substances

• High efficiency with low carry-over

• Excellent MS compatibility

• Wide operating pH range: 0–14

• High temperature stability: up to 110 °C

• High throughput

High Performance RP Chromatography Column for mAb Analysis

MAbPac RP Column

PRODUCT SPECIFICATIONS

Page 2: High Performance RP Chromatography Column for mAb Analysis · biopharmaceutical, protein, proteomics, biomolecules, intact protein The Thermo Scienti˜c™ MAbPac™ RP is a reverse

2

can quickly reveal the location, as well as nature, of the modification. In most QC environments LC/UV analysis of mAb fragments has been established as high throughput assays.

Column TechnologyThe MAbPac RP is a reverse phase (RP) column specifically designed for separation of intact monoclonal antibodies (mAbs) and mAb fragments. The stationary phase is fully compatible with mass spectrometry friendly organic solvent such as acetonitrile and isopropanol, as well as low pH eluents containing trifluoroacetic acid or formic acid. The MAbPac RP column is based on wide-pore 4 µm polymer particles that are stable at extreme pH (0–14) and high temperature (up to 110 °C). The wide-pore size of polymeric particles enables efficient separation of protein molecules with low carry-over.

Column: MAbPac RP, 4 μmFormat: 2.1 × 50 mmMobile phase A: H

2O/TFA (99.9 : 0.1 v/v)

Mobile phase B: MeCN/H2O/TFA (90: 9.9 :0.1 v/ v/v/)

Gradient: Time (min) %A %B -1.0 80 20 0.0 80 20 2.5 50 50 2.7 50 50 2.8 80 20 3.0 80 20Temperature: 80 ºCFlow Rate: 0.6 mL/minInj. Volume: 1 μLDetection: UV (280 nm)

Sample: 1. Ribonuclease A (0.5 mg/mL) 2. Cytochrome C (0.5 mg/mL) 3. Lysozyme (0.5 mg/mL) 4. mAb (1 mg/mL)

Figure 1. Fast separation of intact proteins/mAb.

Abso

rban

ce (m

AU)

Retention Time (min)

0.500.00 1.00 1.50 2.00 2.50 3.00

0

-20

13

25

38

50

63

75

88

100

113

125

140

1

2

3

4

ApplicationsFast Separation of Intact Proteins/mAbs The MAbPac RP column is designed for high resolution and fast separation of proteins. High throughput and high-resolution can be achieved by adjusting both gradient slope and flow rate. The wide-pore nature of polymer particles combined with 4 µm particle size provides excellent resolution for intact proteins/mAbs with high-throughput and low carry-over. Figure 1 shows the baseline separation of four proteins: ribonuclease A, cytochrome C, lysozyme, and mAb, on a 2.1 × 50 mm MAbPac RP column within 3 min.

Abso

rban

ce (m

AU)

Retention Time (min)

1.0 3.0 6.0 9.0 12.0 15.0

50

-10

100

50

-10

90

50

-10

80-20

140 mAb

LC

HC

Fc

Fab

scFc

(a)

(b)

(c)

(d) F(ab’)2

Papain digestion

Fab Fab

Fc

Reduction

IdeS

IgG

DTT

HC

LC

(ab')F2

IgG scFc

Column: MAbPac RP, 4 μmFormat: 3 × 50 mmMobile phase A: H

2O/FA/TFA (99.88 : 0.1:0.02 v/v/v)

Mobile phase B: MeCN/ H2O/FA/TFA (90: 9.88 : 0.1:0.02 v/v/v/v)

Gradient: Time (min) %A %B 0.0 80 20 1.0 80 20 11.0 55 45 12.0 55 45 14.0 80 20 15.0 80 20Temperature: 80 ºCFlow Rate: 0.5 mL/minInj. Volume: 5 μLDetection: UV (280 nm) Sample: (a) Trastuzumab (5 mg/mL) (b) Trastuzumab + DTT (4 mg/mL) (c) Trastuzumab + Papain (2 mg/mL) (d) Trastuzumab + IdeS (2 mg/mL)

Figure 2. Separation of mAb and mAb fragments.

Page 3: High Performance RP Chromatography Column for mAb Analysis · biopharmaceutical, protein, proteomics, biomolecules, intact protein The Thermo Scienti˜c™ MAbPac™ RP is a reverse

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m/z

Time (min)

29352930 2940 2945 2950 2955 2960 2965 2970 2975 2980 2985 2990 2995 30000

10

0

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0

8.26

8.44

12.748.6310.5310.339.888.97 9.729.377.395.935.685.43 6.095.134.47 6.996.74 7.64

2965.42

2968.61

2962.22

2971.87

2959.34 2974.96

2996.302953.05 2993.072936.54

2977.492956.452933.53 2980.99 2986.82

2939.753002.66

2200

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danc

eRe

lativ

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unda

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2000

5.05.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 10.5 11.0 11.5 12.0 12.5 13.0

2400 2600 2800

3223.203088.92 3294.80

3369.643154.64

3025.91

2965.42 3447.98

2907.273530.09

3616.142851.39

3706.502797.55

3801.53

2745.82

2695.912647.76

3901.542601.372513.18

2471.322430.80

2394.25

2283.772183.132057.49

3917.63

3994.21

3000 3200 3400 3600 3800 4000

m/z

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Separation of mAb Fragments Monoclonal antibodies are heterogeneous. Comprehensive analysis of mAb post-translational modifications, such as deamidation, C-terminal lysine truncation, N-terminal pyroglutamation, methionine (Met) oxidation, and glycosylation, requires complete digestion of mAbs and sequencing of all the peptides. However, “peptide mapping” is time consuming. A simpler and more direct way to analyze mAb variants and locate the modifications is to measure mAb fragments, which can either be generated by chemical reduction or by enzymatic digestion. Figure 2 shows the analysis of trastuzumab intact molecule and fragments. LC and HC (Figure 2b), Fc and Fab (Figure 2c), scFc and F(ab')2 (Figure 2d) are baseline separated on a 3 × 50 mm MAbPac RP column using a 10 min gradient. Light chain (LC) and heavy chain (HC) are generated by the reduction of mAb, Fc and Fab fragments are generated by papain digestion, and single-chain Fc (scFc) and F(ab')2 fragments are generated by IdeS digestion.

LC/MS analysis of Intact mAb and mAb fragments High resolution mass spectrometers such as the Thermo Scientific™ Q Exactive™ HF Hybrid Quadrupole-Orbitrap™ Mass Spectrometer provide accurate mass information of large biologic molecules such as mAbs. The MAbPac RP column can be directly coupled to the mass spectrometer for MS detection of mAb and mAb fragments. While trifluoroacetic acid (TFA) as ion-pairing reagent provides excellent separation results, TFA can suppress ionization in the LC/MS interface, causing a drop in signal. This can be mitigated by reducing the TFA concentration to 0.02% and additional use 0.1% Formic acid (FA). Figure 3 shows the intact mass detection of trastuzumab. The top trace shows the total ion-current chromatogram. The middle trace shows the MS spectrum of trastuzumab in the mass range of 2,000 to 4,000 m/z. The bottom trace shows a zoom-in spectrum of trastuzumab with 50+ charges. The cluster shows the glycosylation profile of trastuzumab.

TIC

MS spectrum

m/z at 50+

Column: MAbPac RP, 4 μmFormat: 3 × 50 mmMobile phase A: H

2O/FA/TFA (99.88 : 0.1:0.02 v/ v/v)

Mobile phase B: MeCN/ H2O/FA/TFA (90: 9.88 : 0.1:0.02 v/v/v/v)

Gradient: Time (min) %A %B 0.0 80 20 1.0 80 20 11.0 55 45 12.0 55 45 14.0 80 20 15.0 80 20Temperature: 80 ºCFlow Rate: 0.5 mL/minInj. Volume: 1 μLMS Detection: positive-ion modeMass Spec: Q Exactive Plus Sample: Trastuzumab (5 mg/mL)

Figure 3. Intact mAb and glycosylation profile by LC/MS.

Page 4: High Performance RP Chromatography Column for mAb Analysis · biopharmaceutical, protein, proteomics, biomolecules, intact protein The Thermo Scienti˜c™ MAbPac™ RP is a reverse

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During characterization, mAb is often reduced to LC and HC. Mass spectrometry analysis of these fragments can quickly review and localize the modifications. Figure 4 shows the separation of trastuzumab LC and HC on a 3 × 50 mm MAbPac RP column. Total ion chromatogram (TIC) and UV spectrum show identical retention time of mAb fragments. The mass spectrum of LC shows multiple charge states of a single polypeptide chain while the mass spectrum of the HC shows multiple glycosylation forms of the heavy chain.

m/z

1200 1300 1400 1500 1600 18001700 1900 2000 2100 2200 2300 2400

0

10

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30

40

50

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Time (min)

3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 10.5 11.00

50000100000150000200000250000300000350000400000450000500000550000600000

Rela

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danc

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Rela

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Abun

danc

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0

100

LC HC8.28

7.43

8.58 8.86 10.7710.373.943.63 9.114.793.2310.02

4.349.76

5.20 5.50 5.95 6.10 7.956.416.96

8.28

7.42

8.859.10

7.736.806.636.35

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danc

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m/z

16101600 1620 1630 1640 1650 1660 1670

1638.29

1633.01

1643.60

1631.64

1640.08

1634.91

1628.28

1625.61

1646.93

1671.37

1624.16

1661.33

1605.32

1608.89

1666.591653.79

1620.16

1600.00

1615.28

31+

Rela

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Abun

danc

e

1638.291539.03

1692.831493.851751.18

1446.471813.69

1410.901880.81

1953.111368.362031.28

2115.811336.67

2200.692308.14

2253.372358.10

2418.02

1269.96

1238.96

2472.971180.58

2158.66

1954.16

1803.88

2131.631675.14

1563.47 2344.74

1465.80

1379.681303.03 1967.87 2146.62

1234.47 1687.01 2361.042233.121575.62

1819.281478.76

1762.962095.001392.8610

20

30

40

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90

0

100

10

20

30

40

50

60

70

80

90

TIC

UV

LC: Light Chain MS Spectrum

HC: Heavy Chain MS Spectrum with multiple glycosylation forms

Column: MAbPac RP, 4 μmFormat: 3 × 50 mmMobile phase A: H

2O/FA/TFA (99.88 : 0.1:0.02 v/ v/v)

Mobile phase B: MeCN/ H2O/FA/TFA (90: 9.88 : 0.1:0.02 v/v/v/v)

Gradient: Time (min) %A %B 0.0 80 20 1.0 80 20 11.0 55 45 12.0 55 45 14.0 80 20 15.0 80 20Temperature: 80 ºCFlow Rate: 0.5 mL/minInj. Volume: 1 μLUV Detection: 280 nmMS Detection: positive-ion modeMass Spec: Q Exactive Plus Sample: Reduced trastuzumab (4 mg/mL)

Figure 4. LC/MS analysis of mAb fragments.

Page 5: High Performance RP Chromatography Column for mAb Analysis · biopharmaceutical, protein, proteomics, biomolecules, intact protein The Thermo Scienti˜c™ MAbPac™ RP is a reverse

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LC/MS analysis of mAb fragments containing oxidation variants Development of high-throughput release and characterization assays is critical for the effective support of the rapidly growing biologics pipeline for biotherapeutics. Oxidation of mAb is commonly monitored during process optimization, formulation development, and stability studies. The mAb can be broken down into scFc, LC, and Fd' fragments using DTT reduction followed by IdeS enzyme. Figure 5a shows the baseline separation of the scFc, LC, and Fd´ fragments of trastuzumab. This sample was previously treated with H2O2, resulting in oxidation of a methione in the Fc region (confirmed by peptide mapping, data not shown). The oxidized scFc eluted before the

unmodified scFc. Figure 5b shows the +10 charge state of scFc at m/z 2525.60 and Figure 5c shows the +10 charge state of unmodified scFc at m/z 2524.08. The delta mass between oxidized peak and unmodified peak corresponds to one oxygen mass. This example demonstrates that oxidation occurring in the scFc, LC, and Fd', regions can be simultaneously monitored by this assay, without going through complete digestion of mAb and peptide mapping. This simple reduction/digestion assay coupling with fast separation of the mAb fragments using the MAbPac RP column and high resolution accurate mass detection using the Q Exactive HF Hybrid system makes it an ideal method for high throughput screening of mAb oxidation.

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2460 2480 2500 2520 2540 2560 2580 2600 26200

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32 4 5 6 7 8 9 10 11 120

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20

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50

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80

90

100

0

10

20

30

40

50

60

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80

90

100

Fd’10.42

LC8.35

+102541.99

scFc7.37

Oxidizied scFc7.16

2525.60

2524.08

10.1010.79 11.90

5.074.87

6.285.825.524.21

3.919.633.45 6.483.25 9.38

8.922.852.50 7.79

2525.60

2557.972529.45

2510.982545.66 2560.15

2521.752502.76

2566.26

2524.08

2540.38

2509.45 2527.98 2544.22 2556.93

2501.48 2520.11 2560.782585.84

m/z

Time (min)

2525.60

2524.08

(a) TIC

(b) Oxidized scFc

(c) scFc

Column: MAbPac RP, 4 μmFormat: 3 × 50 mmMobile phase A: H

2O/FA/TFA (99.88 : 0.1:0.02 v/ v/v)

Mobile phase B: MeCN/ H2O/FA/TFA (90: 9.88 : 0.1:0.02 v/v/v/v)Gradient: Time (min) %A %B 0.0 75 25 1.0 75 25 11.0 63 37 12.0 63 37 14.0 75 25 15.0 75 25Temperature: 80 ºCFlow Rate: 0.5 mL/minInj. Volume: 2 μLMS Detection: Positive-ion modeMass spec: Q Exactive Plus Sample: Oxidized trastuzumab, reduced by DTT and digested by IdeS (1 mg/mL)

Figure 5. LC/MS analysis of oxidized scFc.

Page 6: High Performance RP Chromatography Column for mAb Analysis · biopharmaceutical, protein, proteomics, biomolecules, intact protein The Thermo Scienti˜c™ MAbPac™ RP is a reverse

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Analysis of Antibody-Drug-Conjugate (ADC) Antibody-drug-conjugate has been proved to be a very effective cancer therapy. Due to the heterogeneous nature of the ADC, it is critical to characterize its multiple drug-to-antibody ratio (DAR) forms. The MAbPac RP column can be utilized in the separation of mAb and its conjugates. In Figure 6, ADCs were prepared using The SiteClick™ Antibody Labeling System from Thermo Fisher Scientific. Most of the antibody glycan branches terminate with galactose-N-acetylglucosamine (Gal-GlcNAc-) or with N-acetylglucosamine (GlcNAc-). Removal of the terminal Gal residue with β-galactosidase unmasks the majority of terminal GlcNAc labeling

sites for the subsequent enzymatic β-galactosyl transferase (GalT) reaction. After cleavage of terminal Gal residues by β-galactosidase, each N-linked glycan will contain, on average, 2 terminal GlcNAc residues per heavy chain (4 terminal GlcNAc per antibody). The azide-activated antibodies were then conjugated with dibenzocyclooctyne (DIBO)-activated Val-Cit-PAB-Monomethyl Auristatin E (MMAE) toxin in a copperless click reaction, resulting in a mixture of drug-loaded antibody species with 0 to 4 MMAE molecules. The unmodified mAb and ADCs with DAR values ranging from 0 to 4 are well resolved on the MAbPac RP column (Figure 7).

ß-1,4-Galactosidase

37 °C, 5 hr 25 °C, overnight

Antibody Drug Conjugate (ADC)Unlabeled Ab Terminal Gal Cleaved Ab

Add inGalT(Y289L)

UDP-GalNAz

N3

N3N3

N3MMAEMMAE

MMAEMMAE

DIBO-MMAE

37 °C, overnight

Azide-Activated Ab(stable for long-term storage)

Abso

rban

ce (m

AU)

1.00 1.50

Retention Time (min)

2.00 2.50 3.00 3.50

DAR0DAR1

DAR2

DAR3

DAR4

4.00-5.0

0.0

5.0

10.0

15.0

20.0

25.0

Figure 6. Site-selective antibody-drug conjugates (ADCs).

Column: MAbPac RP, 4 μmFormat: 2.1 ×50 mmMobile phase A: H2O/TFA (99.9 : 0.1 v/v)Mobile phase B: MeCN/ H2O/TFA (90: 9.9 :0.1 v/v/v)Gradient: Time (min) %A %B 0.0 65 35 0.5 65 35 4.5 45 55 5.0 45 55 5.5 65 35 6.0 65 35Flow Rate: 0.6 mL/minTemperature: 80 ºCInj. Volume: 2 μLDetection: UV (280 nm) Sample: Trastuzumab-MMAE

Figure 7. MMAE modified trastuzumab ADC.

Page 7: High Performance RP Chromatography Column for mAb Analysis · biopharmaceutical, protein, proteomics, biomolecules, intact protein The Thermo Scienti˜c™ MAbPac™ RP is a reverse

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Analysis of PEGylated Protein Protein PEGylation technology has been used successfully to increase the circulating half life and decrease antigenicity of protein drugs. Most PEGylated proteins contains multiple PEGylated forms. Figures 8a and 8b illustrate the separation of a PEGylated protein and its de-PEGylated form on a 2.1 × 50 mm MAbPac RP column. At least eight PEGylated forms are resolved based on the degree of PEGylation.

Abso

rban

ce (m

AU)

Retention Time (min)

1.0 2.0 3.0 4.0 5.0 6.0 7.0 8.0 9.0 10.0 11.0

5.0

-2.0

10.0

14.0

2.0

-1.0

4.0

6.0

9.0 (a)

(b)

Column: MAbPac RP, 4 μmFormat: 3.0 × 50 mmMobile phase A: H2O/TFA (99.9 : 0.1 v/v)Mobile phase B: MeCN/ H2O/TFA (90: 9.9 :0.1 v/v/v/)Gradient: Time (min) %A %B 0.0 55 45 1.0 55 45 11.0 25 75 12.0 25 75 14.0 55 45 15.0 55 45Temperature: 80 ºCFlow rate: 0.5 mL/minInj. volume: 10 μLDetection: UV (280 nm) Sample: (a) Pegylated protein (11 mg/mL) (b) De-pegylated protein (1.24 mg/mL)

Top-down LC/MS/MS Analysis of Intact Protein Standards Thermo Scientific™ Pierce™ Intact Protein Mix consists of six recombinant proteins: IGF-I LR3 (9 kDa), thioredoxin (12 kDa), protein G (21 kDa), carbonic anhydrase II (29 kDa), protein AF (51 kDa), and exo klenow (68 kDa). These proteins are selected to satisfy the following criteria: 1) evenly covering a MW range of 10kD–66kD, 2) presenting mostly clean, modification and adduct-free ESI spectra, and 3) having ESI charge state distributions covered a wide m/z range from 500–2,000. A 1 mm ID MAbPac RP column was chosen to analyze these proteins because it provides higher sensitivity than larger

internal diameter columns, when sample size is limited. Figure 9a shows baseline separation of all six proteins using an acetonitrile/H2O/formic acid mobile phase. Top-down MS/MS spectra were acquired on a Q Exactive HF Hybrid Quadrupole-Orbitrap Mass Spectrometer using top 3–5 DDA method. OT MS1 data was acquired at resolution settings of 15 at m/z 200 and OTMS2 at a resolution of 120K at m/z 200. Figure 9b shows deconvolution results from Thermo Scientific™ Protein Deconvolution™ 4.0 software and Figure 9c shows top-down results from ProSight PD 1.1 node in Proteome Discoverer 2.1 software.

Figure 8. PEGylated protein.

Column: MAbPac RP, 4 μmFormat: 1.0 × 150 mmMobile phase A: H

2O/FA (99.9 : 0.1 v/v)

Mobile phase B: MeCN/FA (99.0: 0.1 v/v)Gradient: Time (min) %A %B 0.0 90 10 1.0 80 20 15.0 55 45 16.0 10 90 20.0 10 90 20.1 90 10 25.0 90 10Temperature: 60 ºCFlow Rate: 0.1 mL/minInj. Volume: 1 μLMS Detection: Positive-ion modeMass Spec: Q Exactive HF Sample: Pierce Intact Protein Standard Mix, 500 ng/μL (p/n A35526) 1. IGF-I LR3 (9 kDa) 2. Thioredoxin (12 kDa) 3. Protein G (21 kDa) 4. Carbonic Anhydrase II (29 kDa) 5. Protein AF (51 kDa) 6. Exo Klenow (68 kDa)

Figure 9a. Total ion chromatogram of the LC/MS analysis of the Intact Protein Standard Mix.

Relat

ive A

bund

ance

6 8

Time (min)

10 12 14 16

1

4

5

3

2

6

180

10

20

30

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70

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90

100

Page 8: High Performance RP Chromatography Column for mAb Analysis · biopharmaceutical, protein, proteomics, biomolecules, intact protein The Thermo Scienti˜c™ MAbPac™ RP is a reverse

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Excellent Reproducibility and Chemical Stability Column ruggedness is a critical characteristic for accurate and reproducible results, as well as good column lifetime. MAbPac RP columns are packed using a carefully developed packing protocol to ensure excellent packed bed stability, column efficiency and peak asymmetry. Figure 10 demonstrates that the

excellent performance of the MAbPac RP is maintained throughout 1,000 runs at 80 °C providing consistent retention time, peak shape, and peak efficiency, with minimal increase in column backpressure. The RSDs of retention time from four protein peaks are tabulated in Table 1.

Peaks 1 2 3 4

RSD of Retention Time

0.535 0.262 0.225 0.123

Column: MAbPac RP, 4 μmFormat: 2.1 × 50 mmMobile phase A: H

2O/TFA (99.9 : 0.1 v/v)

Mobile phase B: MeCN/ H2O/TFA (90: 9.9 :0.1 v/v/v/)

Gradient: Time (min) %A %B -1 80 20 0.0 80 20 2.5 50 50 2.7 50 50 2.8 80 20 3.0 80 20Temperature: 80 ºCFlow Rate: 0.6 mL/minInj. Volume: 1 μLDetection: UV (280 nm) Sample: 1. Ribonuclease A (0.5 mg/mL) 2. Cytochrome C (0.5 mg/mL) 3. Lysozyme (0.5 mg/mL) 4. mAb (1 mg/mL)

Abso

rban

ce (m

AU)

Retention Time (min)

0.00 0.50 2.001.501.00 2.50 3.00

-60

-80

-40

-20

0

20

40

60

80

100

120

#901#801#701#651#501#401#301#201#101

1

2

3

4

#1101

Figure 10. Excellent reproducibility.

Figure 9c. List of identified proteins using Proteome Discoverer 2.1 software.

0

50

10068000.88Klenow

50459.42Protein AG

29038.2221441.92Protein G

11864.58Thioredoxin

9110.80

10000 20000 30000 40000 50000 60000 70000

Mass

IGF-I LR3

CA II

Figure 9b. Average masses for all six proteins in the Intact Protein Standard Mix.

Page 9: High Performance RP Chromatography Column for mAb Analysis · biopharmaceutical, protein, proteomics, biomolecules, intact protein The Thermo Scienti˜c™ MAbPac™ RP is a reverse

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RunSequence Ribonuclase A Cytochrome C Lysozyme mAb

Ret.Time(min)

PWHH(min)

Area Ret.Time(min)

PWHH(min)

Area Ret.Time(min)

PWHH(min)

Area Ret.Time(min)

PWHH(min)

Area

101 1.28 0.046 0.732 1.78 0.038 2.632 2.08 0.034 4.812 2.45 0.033 1.973201 1.28 0.045 0.729 1.78 0.038 2.715 2.07 0.035 4.871 2.45 0.033 2.051301 1.28 0.044 0.735 1.78 0.038 2.794 2.07 0.035 4.942 2.44 0.033 2.069401 1.29 0.043 0.734 1.79 0.038 2.798 2.07 0.035 4.896 2.45 0.033 1.996501 1.28 0.044 0.743 1.78 0.038 2.849 2.07 0.035 4.941 2.45 0.033 2.044601 1.28 0.044 0.726 1.78 0.038 2.688 2.07 0.034 4.692 2.45 0.033 2.041701 1.29 0.043 0.737 1.79 0.038 2.829 2.08 0.036 4.807 2.45 0.033 2.042801 1.29 0.043 0.724 1.78 0.038 2.799 2.07 0.035 4.708 2.45 0.034 1.914901 1.28 0.044 0.723 1.78 0.038 2.801 2.07 0.035 4.681 2.45 0.033 1.991001 1.28 0.044 0.729 1.78 0.038 2.826 2.07 0.035 4.748 2.45 0.033 2.0181101 1.3 0.043 0.72 1.79 0.038 2.786 2.08 0.035 4.634 2.45 0.033 1.894RSD 0.535 2.150 0.935 0.262 0.000 2.414 0.225 1.545 2.272 0.123 0.911 2.844

Column: MAbPac RP, 4 μmFormat: 2.1 × 50 mmMobile phase A: H

2O/TFA (99.9 : 0.1 v/v)

Mobile phase B: MeCN/ H2O/TFA (90: 9.9 :0.1 v/v/v/)

Gradient: Time (min) %A %B -1 80 20 0.0 80 20 2.5 50 50 2.7 50 50 2.8 80 20 3.0 80 20Temperature: 80 ºCFlow Rate: 0.6 mL/minInj. Volume: 1 μLDetection: UV (280 nm) Sample: 1. Ribonuclease A (0.5 mg/mL) 2. Cytochrome C (0.5 mg/mL) 3. Lysozyme (0.5 mg/mL) 4. mAb (1 mg/mL)

Abso

rban

ce (m

AU)

Retention Time (min)

0.50 1.00 1.50

After 6 hrs of 0.8 MNaOH wash at 80 ºC

Before NaOH wash

2.00 2.50 3.00 3.50

0

-20

13

25

38

50

63

75

88

100

113

125

140

1

2

3

4

Figure 11. Superior chemical stability.

Table 1. Reproducibility of MAbPac RP column.

MAbPac RP chemistry (PS-DVB) is stable under a wide pH range. Figure 11 shows that MAbPac RP column maintains its performance after 6 hours of wash with 0.8 M NaOH at 80 °C. Compared to silica based RP

columns, such chemical stability, especially under alkaline condition provides a great advantage for column cleaning and removal of protein carryover.

Page 10: High Performance RP Chromatography Column for mAb Analysis · biopharmaceutical, protein, proteomics, biomolecules, intact protein The Thermo Scienti˜c™ MAbPac™ RP is a reverse

10

Abso

rban

ce (m

AU)

1.0 2.5

Retention Time (min)

5.0 7.5 10.0 12.5 15.0 16.0-20

00

20

40

60

80

100

120

1

2

3

4

Chemistry PhenylPolymer Substrate DVB particlesParticle size 4 µmPore size 1,500 ÅColumn housing Stainless steel for the 3.0 and 2.1 mm ID

PEEK for the 1.0 mm ID

Column: MAbPac RP, 4 μmFormat: 1.0 × 100 mmMobile phase A: H

2O/TFA (99.9 : 0.1 v/v)

Mobile phase B: MeCN/ H2O/TFA (90: 9.9 :0.1 v/v/v/)

Gradient: Time (min) %A %B 0.0 80 20 1.0 80 20 11.0 50 50 13.0 50 50 13.1 80 20 25.0 80 20Temperature: 80 ºCFlow Rate: 0.1 mL/minInj. Volume: 0.5 μLDetection: UV (280 nm) Sample: 1. Ribonuclease A (0.5 mg/mL) 2. Cytochrome C (0.5 mg/mL) 3. Lysozyme (0.5 mg/mL) 4. mAb (1 mg/mL)

Figure 12. Separation of intact proteins/mAb using 1mm ID format column.

HPLC system consideration Analytical format MAbPac RP columns in 2.1 mm ID and 3.0 mm ID format can be used with an HPLC system equipped with either a high pressure mixing pump (HPG), or low pressure mixing pump (LPG) to achieve high resolution separation. Low flow MAbPac RP columns, in 1.0 mm ID, are normally operated in the flow rate range of 75 to 150 µL/min and therefore should be operated with a high pressure mixing pump to avoid excessive gradient delay. Figure 12 demonstrates that the excellent

separation of the four protein standards is achieved on a 1 × 100 mm MAbPac RP column using a Thermo Scientific™ Vanquish™ Horizon UHPLC system with a 35 µL gradient mixer. The gradient delay observed here is ~ 2.5 min.

Consistent Manufacturing Each MAbPac RP column is manufactured according to stringent specifications to ensure column-to-column reproducibility. Each column is shipped with a test chromatogram. Physical Data

Page 11: High Performance RP Chromatography Column for mAb Analysis · biopharmaceutical, protein, proteomics, biomolecules, intact protein The Thermo Scienti˜c™ MAbPac™ RP is a reverse

Find out more at thermofisher.com/mabpac For Research Use Only. Not for use in diagnostic procedures. ©2017 Thermo Fisher Scientific Inc. All rights reserved. All trademarks are the property of Thermo Fisher Scientific and its subsidiaries. This information is presented as an example of the capabilities of Thermo Fisher Scientific products. It is not intended to encourage use of these products in any manners that might infringe the intellectual property rights of others. Specifications, terms and pricing are subject to change. Not all products are available in all countries. Please consult your local sales representatives for details. PS21199-EN 0517S

Column Column ID (mm)

Flow Rate(mL/min)

Pressure Limit (psi)

Temperature(ºC)

pH Range

MAbPac RP 3.0 0.50–1.00 4,000 < 110 0–14MAbPac RP 2.1 0.30–0.60 4,000 < 110 0–14MAbPac RP 1.0 0.075–0.15 4,000 < 110 0–14

Operational Specifications

Description Particle Size (μm)

Part Number

MAbPac RP, Analytical, 3.0 × 100 mm 4 088644MAbPac RP, Analytical, 3.0 × 50 mm 4 088645MAbPac RP, Guard, 3.0 × 10 mm 4 088646MAbPac RP, Analytical, 2.1 × 100 mm 4 088647MAbPac RP, Analytical, 2.1 × 50 mm 4 088648MAbPac RP, Guard, 2.1 × 10 mm 4 088649MAbPac RP, Analytical, 1.0 × 150 mm 4 302598MAbPac RP, Analytical, 1.0 × 100 mm 4 302695MAbPac RP, Analytical, 1.0 × 50 mm 4 302597

Ordering Information