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ABSTRACT Animal models are a key tool for assessing toxicity and efficacy of molecules before they are tested in humans. In many cases, however, potential therapeutic molecules that are active on human targets do not efficiently modulate their counterparts in other species. Expression of human proteins in the mouse is therefore becoming one of the most common approaches to overcome these limitations. The most effective way to generate mouse models expressing human proteins is to insert human genes in the mouse genome, a process defined as genetic humanization. In this poster, we will present examples of genetic humanization projects and discuss the pros and cons of the most common strategies: BAC transgenesis, minigene insertion, and full gene replacement. We will discuss which factors influence the success of these complex projects and which aspects should be taken into consideration while generating a humanized mouse model. Finally, we will present the success rate derived from the analysis and of over 100 independent genetic humanization projects using the two most common approaches, namely gene replacement and minigene insertion, and provide specific guidelines for generation of these preclinical models. APPLICATIONS OF HUMANIZED MOUSE MODELS In vivo drug efficacy testing by expressing the human target in the mouse ADMET (absorption, distribution, metabolism, excretion, toxicology) by accurately modeling drug metabolism In vivo testing of complex therapeutic approaches (i.e. in vivo genome editing, enzymatic complementation, etc.) by mimicking human diseases Target discovery and validation by modeling human physiology and pathology Study of infectious disease by humanizing specific pathogen receptors APPROACHES TO HUMANIZING THE MOUSE GENOME US: 1-888-822-6642 | EU: +45 70 23 04 05 | [email protected] | TACONIC.COM ©Taconic Biosciences, Inc. All rights reserved. Contents of this publication may not be reproduced in any form without prior permission. PT1072-EN-1706 Humanizing the Mouse Genome: Generating New Tools for Preclinical Research Timelines for gene replacement projects can be shortened using the ExpressMODEL ® approach Successful means that the humanized allele has an expression of a similar level (60% or more) of the endogenous mouse gene and the same pattern of expression as measured by RT-qPCR. Number of projects analyzed: 102. Alliegro, M.; Ferla, R.; Nusco, E.; Leonibus, C. D.; Settembre, C.; Auricchio, A. Low-Dose Gene Therapy Reduces the Frequency of Enzyme Replacement Therapy in a Mouse Model of Lysosomal Storage Disease. Molecular Therapy 2016, 24 (12), 2054–2063. Ferla, R.; Claudiani, P.; Cotugno, G.; Saccone, P.; Leonibus, E. D.; Auricchio, A. Similar Therapeutic Efficacy Between a Single Administration of Gene Therapy and Multiple Administrations of Recombinant Enzyme in a Mouse Model of Lysosomal Storage Disease. Human Gene Therapy 2014, 25 (7), 609–618. Macleod, A. K.; Mclaughlin, L. A.; Henderson, C. J.; Wolf, C. R. Application of Mice Humanized for CYP2D6 to the Study of Tamoxifen Metabolism and Drug-Drug Interaction with Antidepressants. Drug Metabolism and Disposition 2016, 45 (1), 17–22. Adriano Flora, Jochen Welcker, Alexander Klimke, Steffen Guettler, Jeanette Kessler, Petric Kuballa, Taconic Biosciences GmbH, Cologne, Germany Eleanor Kolossovski, John Couse, Taconic Biosciences, Inc., Rensselaer, NY Experimental Goal To compare the efficacy of enzyme replacement and gene therapy in treating a monogenic disease (mucopolysaccharidosis V) Experimental Tool A mouse model lacking a functional Arsb gene and tolerating human ARSB protein Approach Generation of a targeted transgenic model expressing a non-functional human ARSB protein and crossed with an Arsb knockout mouse model Results Using the humanized mouse model, the group of Alberto Auricchio at TIGEM showed that low-dose gene therapy can efficiently substitute enzyme replacement therapy Experimental Goal To test the activity of drug metabolism by cytochrome P450 2D6 (CYP2D6) in vivo Experimental Tool A mouse model where the Cyp2d cluster has been replaced by the human CYP2D6 gene Approach Knock-in of the human CYP2D6 gene and deletion of the entire mouse Cyp2d cluster Results Using the humanized mouse model, McLeod et al. proved drug-drug interactions in vivo between antidepressant drugs and Tamoxifen Transgenesis allows the expression of a human gene in the mouse Pros: technically straightforward Cons: endogenous mouse gene will still be expressed; pattern of expression might not recapitulate expression of the endogenous gene • Random transgenesis • Targeted transgenesis • Conditional targeted transgenesis Knock-in allows replacement of the mouse coding sequence with the human counterpart Pros: mouse gene is inactivated; expression of the human gene is controlled by the endogenous regulatory elements Cons: technically complexity • Minigene insertion • Gene replacement HUMANIZATION BY TRANSGENESIS HUMANIZATION BY GENE REPLACEMENT TACONIC PROJECT SUMMARY TIMELINES Humanization Strategy by Transgenesis Humanization Strategy by Gene Replacement Genomic Replacement Minigene Insertion ORF Exchange Point Mutations Exon Replacement Exon Swapping Successful 42 23 10 2 2 0 Unsuccessful 3 17 2 0 0 1 0 5 10 15 20 25 30 35 40 45 Number of Projects Success of Genomic Humanization of the Mouse Genome: Comparison of Knock-In Approaches RMCE Vector Targeted Allele (After Recombination-Mediated Cassette Exchange) Recombinase-Mediated Cassette Exchange (RMCE) Humanized allele 9 Kb CYP2D6 gene Homologous recombination Cre-mediated cluster excision FRT site loxP site coding exon (mouse) coding exon (human) mouse genomic region human genomic region untranslated region (mouse) untranslated region (mouse) lox5171 site F3 site neighboring gene G2 Heterozygous Expansion G3 Homozygous Cohort 16 weeks 12 weeks 8 weeks 10 weeks 12 weeks 12 weeks G1 Heterozygous Generation Vector Construction ES Cell Targeting Chimera Production G2 Homozygous Cohort 8 weeks 10 weeks 12 weeks 12 weeks 12 weeks G1 Heterozygous Generation Vector Construction ES Cell Targeting Chimera Production IVF 8 weeks 12 weeks 12 weeks 12 weeks Experimental Cohort Vector Construction Germline Breeding PNI & Founder Breeding 70 Weeks 54 Weeks ExpressMODEL ® 44 Weeks Standard Gene Targeting Random Transgenesis

Humanizing the Mouse Genome: Generating New Tools for ... · ABSTRACT Animal models are a key tool for assessing toxicity and efficacy of molecules before they are tested in humans

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Page 1: Humanizing the Mouse Genome: Generating New Tools for ... · ABSTRACT Animal models are a key tool for assessing toxicity and efficacy of molecules before they are tested in humans

ABSTRACTAnimal models are a key tool for assessing toxicity and efficacy of molecules before they are tested in humans. In many cases, however, potential therapeutic molecules that are active

on human targets do not efficiently modulate their counterparts in other species. Expression of human proteins in the mouse is therefore becoming one of the most common approaches

to overcome these limitations. The most effective way to generate mouse models expressing human proteins is to insert human genes in the mouse genome, a process defined as genetic

humanization. In this poster, we will present examples of genetic humanization projects and discuss the pros and cons of the most common strategies: BAC transgenesis, minigene

insertion, and full gene replacement. We will discuss which factors influence the success of these complex projects and which aspects should be taken into consideration while generating

a humanized mouse model. Finally, we will present the success rate derived from the analysis and of over 100 independent genetic humanization projects using the two most common

approaches, namely gene replacement and minigene insertion, and provide specific guidelines for generation of these preclinical models.

APPLICATIONS OF HUMANIZED MOUSE MODELS• In vivo drug efficacy testing by expressing the human target in the mouse

• ADMET (absorption, distribution, metabolism, excretion, toxicology)by accurately modeling drug metabolism

• In vivo testing of complex therapeutic approaches (i.e. in vivo genome

editing, enzymatic complementation, etc.) by mimicking human diseases

• Target discovery and validation by modeling human physiology and pathology

• Study of infectious disease by humanizing specific pathogen receptors

APPROACHES TO HUMANIZING THE MOUSE GENOME

US: 1-888-822-6642 | EU: +45 70 23 04 05 | [email protected] | TACONIC.COM

©Taconic Biosciences, Inc. All rights reserved. Contents of this publication may not be reproduced in any form without prior permission. PT1072-EN-1706

Humanizing the Mouse Genome: Generating New Tools for Preclinical Research

Timelines for gene replacement projects can be shortened using the ExpressMODEL® approach

Successful means that the humanized allele has an expression of a similar level (60% or more) of the endogenous mouse gene and the same pattern of expression as measured by RT-qPCR. Number of projects analyzed: 102.

Alliegro, M.; Ferla, R.; Nusco, E.; Leonibus, C. D.; Settembre, C.; Auricchio, A. Low-Dose Gene Therapy Reduces the Frequency of Enzyme Replacement Therapy in a Mouse Model of Lysosomal Storage Disease. Molecular Therapy 2016, 24 (12), 2054–2063.

Ferla, R.; Claudiani, P.; Cotugno, G.; Saccone, P.; Leonibus, E. D.; Auricchio, A. Similar Therapeutic Efficacy Between a Single Administration of Gene Therapy and Multiple Administrations of Recombinant Enzyme in a Mouse Model of Lysosomal Storage Disease. Human Gene Therapy 2014, 25 (7), 609–618.

Macleod, A. K.; Mclaughlin, L. A.; Henderson, C. J.; Wolf, C. R. Application of Mice Humanized for CYP2D6 to the Study of Tamoxifen Metabolism and Drug-Drug Interaction with Antidepressants. Drug Metabolism and Disposition 2016, 45 (1), 17–22.

Adriano Flora, Jochen Welcker, Alexander Klimke, Steffen Guettler, Jeanette Kessler, Petric Kuballa, Taconic Biosciences GmbH, Cologne, Germany Eleanor Kolossovski, John Couse, Taconic Biosciences, Inc., Rensselaer, NY

Experimental GoalTo compare the efficacy of enzyme replacement and gene therapy in treating a monogenic disease (mucopolysaccharidosis V)

Experimental Tool A mouse model lacking a functional Arsb gene and tolerating human ARSB protein

ApproachGeneration of a targeted transgenic model expressing a non-functional human ARSB protein and crossed with an Arsb knockout mouse model

ResultsUsing the humanized mouse model, the group of Alberto Auricchio at TIGEM showed that low-dose gene therapy can efficiently substitute enzyme replacement therapy

Experimental GoalTo test the activity of drug metabolism by cytochrome P450 2D6 (CYP2D6) in vivo

Experimental Tool A mouse model where the Cyp2d cluster has been replaced by the human CYP2D6 gene

Approach Knock-in of the human CYP2D6 gene and deletion of the entire mouse Cyp2d cluster

ResultsUsing the humanized mouse model, McLeod et al. proved drug-drug interactions in vivo between antidepressant drugs and Tamoxifen

Transgenesis allows the expression of a human gene in the mouse

Pros: technically straightforward

Cons: endogenous mouse gene will still be expressed; pattern of expression might not recapitulate expression of the endogenous gene

• Random transgenesis

• Targeted transgenesis

• Conditional targetedtransgenesis

Knock-in allows replacement of the mouse coding sequence with the human counterpart

Pros: mouse gene is inactivated; expression of the human gene is controlled by the endogenous regulatory elements

Cons: technically complexity

• Minigene insertion

• Gene replacement

HUMANIZATION BY TRANSGENESIS HUMANIZATION BY GENE REPLACEMENT

TACONIC PROJECT SUMMARY TIMELINES

Humanization Strategy by Transgenesis

Humanization Strategy by Gene Replacement

Genomic Replacement

Minigene Insertion

ORF Exchange

Point Mutations

Exon Replacement

Exon Swapping

Successful 42 23 10 2 2 0Unsuccessful 3 17 2 0 0 1

0

5

10

15

20

25

30

35

40

45

Nu

mb

er

of

Pro

jects

Success of Genomic Humanization of the Mouse Genome: Comparison of Knock-In Approaches

Humanization Strategy by Transgenesis

RMCE Vector

Targeted Allele (After Recombination-Mediated Cassette Exchange)

Recombinase-Mediated Cassette Exchange (RMCE)

Humanized allele

9 Kb CYP2D6 gene

Humanization Strategy by Gene Replacement

Homologous recombination

Cre-mediated cluster excision

FRT site

loxP site

coding exon (mouse)

coding exon (human)

mouse genomic region

human genomic region

untranslated region (mouse)

untranslated region (mouse) lox5171 site

F3 site nneighboring gene

G2 Heterozygous Expansion

G3 Homozygous Cohort

16 weeks 12 weeks8 weeks 10 weeks 12 weeks 12 weeks

G1 HeterozygousGeneration

VectorConstruction

ES Cell Targeting

ChimeraProduction

G2 Homozygous Cohort

8 weeks 10 weeks 12 weeks 12 weeks 12 weeks

G1 HeterozygousGeneration

VectorConstruction

ES Cell Targeting

ChimeraProduction

IVF

8 weeks 12 weeks 12 weeks 12 weeks

ExperimentalCohort

VectorConstruction

Germline Breeding

PNI & Founder Breeding

70 Weeks

54 Weeks ExpressMODEL®

44 Weeks

Standard Gene Targeting

Random Transgenesis