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IMOS PROFILING CTD DATA IMPLEMENTATION OF AN AUTOMATED POST-PROCESSING METHOD Shaun Byrnes, Craig Steinberg, Greg Coleman, Cristian Munoz Mas, Felicity McAllister, Paul Rigby, Guillaume Galibert, John Luetchford, Chris Bartlett, Juergen Zier IMOS QC Summit Hobart, 5-7 November 2014

IMOS PROFILING CTD DATA€¦ · Shaun Byrnes, Craig Steinberg, Greg Coleman, Cristian Munoz Mas, Felicity McAllister, Paul Rigby, Guillaume Galibert, John Luetchford, Chris Bartlett,

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Page 1: IMOS PROFILING CTD DATA€¦ · Shaun Byrnes, Craig Steinberg, Greg Coleman, Cristian Munoz Mas, Felicity McAllister, Paul Rigby, Guillaume Galibert, John Luetchford, Chris Bartlett,

IMOS PROFILING CTD DATA IMPLEMENTATION OF AN AUTOMATED

POST-PROCESSING METHOD

Shaun Byrnes, Craig Steinberg, Greg Coleman, Cristian Munoz Mas, Felicity McAllister, Paul Rigby,

Guillaume Galibert, John Luetchford, Chris Bartlett, Juergen Zier

IMOS QC Summit

Hobart, 5-7 November 2014

Page 2: IMOS PROFILING CTD DATA€¦ · Shaun Byrnes, Craig Steinberg, Greg Coleman, Cristian Munoz Mas, Felicity McAllister, Paul Rigby, Guillaume Galibert, John Luetchford, Chris Bartlett,

OBJECTIVE

NRS-BGC ANMN Standardised Profiling CTD Data Post-Processing Procedures v.1.5

SIMS, CSIRO, SARDI and AIMS. 08 March 2012.

• Automate the process of converting *.hex to *.cnv

• Reduce processing time

• Reduce risk of errors

• Build simple enough for users at all levels

Page 3: IMOS PROFILING CTD DATA€¦ · Shaun Byrnes, Craig Steinberg, Greg Coleman, Cristian Munoz Mas, Felicity McAllister, Paul Rigby, Guillaume Galibert, John Luetchford, Chris Bartlett,

How does AUTOCTD fit the current process?

Page 4: IMOS PROFILING CTD DATA€¦ · Shaun Byrnes, Craig Steinberg, Greg Coleman, Cristian Munoz Mas, Felicity McAllister, Paul Rigby, Guillaume Galibert, John Luetchford, Chris Bartlett,

SEABIRD CTD PROCESSING

Manual/Batch method

Page 5: IMOS PROFILING CTD DATA€¦ · Shaun Byrnes, Craig Steinberg, Greg Coleman, Cristian Munoz Mas, Felicity McAllister, Paul Rigby, Guillaume Galibert, John Luetchford, Chris Bartlett,

SEABIRD CTD PROCESSING

Automated Method

Page 6: IMOS PROFILING CTD DATA€¦ · Shaun Byrnes, Craig Steinberg, Greg Coleman, Cristian Munoz Mas, Felicity McAllister, Paul Rigby, Guillaume Galibert, John Luetchford, Chris Bartlett,
Page 7: IMOS PROFILING CTD DATA€¦ · Shaun Byrnes, Craig Steinberg, Greg Coleman, Cristian Munoz Mas, Felicity McAllister, Paul Rigby, Guillaume Galibert, John Luetchford, Chris Bartlett,

DATABASE ENTRY

- Toolbox reads form CTD

Data table

Page 8: IMOS PROFILING CTD DATA€¦ · Shaun Byrnes, Craig Steinberg, Greg Coleman, Cristian Munoz Mas, Felicity McAllister, Paul Rigby, Guillaume Galibert, John Luetchford, Chris Bartlett,

CTD QC FILTERS

Page 9: IMOS PROFILING CTD DATA€¦ · Shaun Byrnes, Craig Steinberg, Greg Coleman, Cristian Munoz Mas, Felicity McAllister, Paul Rigby, Guillaume Galibert, John Luetchford, Chris Bartlett,

QC DATA

Page 10: IMOS PROFILING CTD DATA€¦ · Shaun Byrnes, Craig Steinberg, Greg Coleman, Cristian Munoz Mas, Felicity McAllister, Paul Rigby, Guillaume Galibert, John Luetchford, Chris Bartlett,

METADATA

Page 11: IMOS PROFILING CTD DATA€¦ · Shaun Byrnes, Craig Steinberg, Greg Coleman, Cristian Munoz Mas, Felicity McAllister, Paul Rigby, Guillaume Galibert, John Luetchford, Chris Bartlett,

PROS AND CONS

Pros:

- Automated process which saves processing time and reduces risk of error when

applying IMOS settings.

- Reduced chance of processing using incorrect configuration files

- Multiple applications can be applied to a standardised method.

- Multiple users using same standardised method

Cons:

- More intensive process to change settings.

- Uses java routines to run SBE processing software.

- Some work required to initiate use such as setting up xmlcon file and sensor databases

and metadata source file.

Page 12: IMOS PROFILING CTD DATA€¦ · Shaun Byrnes, Craig Steinberg, Greg Coleman, Cristian Munoz Mas, Felicity McAllister, Paul Rigby, Guillaume Galibert, John Luetchford, Chris Bartlett,

NEXT STEPS

• Further improvements and updates.

• Possible adoption by other IMOS CTD processing groups

as a pre-processing tool.