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GPR based root and SOC imaging Dirk B. Hays Texas A&M University Selection of the ideal crops for our industrial and food needs should consider not only the value of the harvested above ground products, but also the local and global environmental services it provides in terms of terrestrial carbon (C) phyto-sequestration and improved soil organic matter enrichment. Selection of ideal crops is well under way. What is lacking, however, is high throughput phenotyping (HTP) and integrated real-time data analysis technologies for selecting ideal genotypes within these crops that also confer recalcitrant high biomass or perennial root systems not only for Carbon phyto - sequestration, but also for adaptation to conservation agro- ecosystems, increasing soil organic matter and soil water holding capacity. We propose to achieve a significant advancement in the use of ground penetrating radar (GPR) to phenotype root biomass and 3D architecture, and to quantify soil carbon sequestration. GPR functions by transmitting a broadband frequency electromagnetic energy signal into the ground. By measuring signal attenuation and signal return time, GPR is able to detect different dielectric properties of unique belowground materials, i.e., roots vs. soil. Signal returns can be quantified on GPS coordinates from a planned grid of field plots or landscapes and rendered into a 3- D field, allowing for visualization and mapping of belowground root biomass. In this context, GPR can be used for genotypic selection in breeding nurseries and unadapted germplasm with favorable root architectures, and for assessing management and nutrient practices that promote root growth for maximal SOC sequestration. The objectives of our team is to: i) Empirically define the optimal ground penetrating radar (GPR)- antenna array for 3D root and soil organic carbon imaging and quantification in high biomass grass systems; and ii) Develop novel 3- and 4-dimensional data analysis methodologies for using GPR for non-invasive crop root and soil C phyto-sequestration 3-D imaging and quantification within a spatially variable soil matrix. The project will capitalize on: 1) a diverse set of high biomass perennial and annual genotypes of millet, napier grass and sorghum, and 2) three high soil organic carbon multi-decade no- till study sites at Texas A&M AgriLife Research Stations. These experimental systems will provide the required contrast gradients in root and organic matter to evaluate and advance GPR technology. Perennial forages and row crops have the potential to sequester significant carbon in the form of high root biomass. In current systems up to 21.56 T C/Ha; Longterm no-till studies using high biomass sorghum have shown that increases in SOC is derived almost exclusively by root biomass; We have successfully begun to use GPR to phenotype forages and row crops for higher root biomass and SOC sequestration potential. Long term no-till studies have shown the increasing SOC sequestration will require a focus on increasing root biomass in cultivated crops; Additionally, international efforts should focus on incentivizing or regulating farming practices to institutionalize no-till practices as a global effort to increase SOC sequestration; An increase in SOC to 1.56% on the 5.1 B Ha of global crop land would sequester 80 ppm atmospheric carbon or 167 Gt carbon. Fig. 1: Perennial Pearl Millet Napier grass forage: Perennial sorghum 21.56 T C/Ha SOC sequestration Graph 2: Predicted root biomass using derived allometry Graph 1: Root wet weight as determined by GPR return pixel counts. Total Nitrogen mg kg -1 600 800 1000 1200 Soil Depth cm -100 -80 -60 -40 -20 0 0% Return 2012 25% Return 2012 50% Return 2012 2008 Total Nitrogen mg kg -1 600 800 1000 1200 Soil Depth cm -100 -80 -60 -40 -20 0 - N 2012 + N 2012 2008 Total Nitrogen mg kg -1 600 800 1000 1200 Soil Depth cm -100 -80 -60 -40 -20 0 RS 2012 SS 2012 2008 Organic Carbon mg kg -1 4000 6000 8000 10000 12000 14000 16000 -100 -80 -60 -40 -20 0 0% Return 2012 25% Return 2012 50% Return 2012 2008 Organic Carbon mg kg -1 4000 6000 8000 10000 12000 14000 Soil Depth cm -100 -80 -60 -40 -20 0 - N 2012 + N 2012 2008 Organic Carbon mg kg -1 4000 6000 8000 10000 12000 14000 -100 -80 -60 -40 -20 0 RS 2012 SS 2012 2008 (A) (F) (E) (D) (C) (B) RS- rotated sorghum SS- continuous sorghum -N = O N +N = added N R² = 0.67 0 1000 2000 3000 4000 5000 6000 0 10000 20000 30000 40000 50000 60000 Root Wet Weight (g) Pixel Count (GPR Derived) Wet Weight by Pixel Count (Combined) 0 500 1000 1500 2000 2500 3000 3500 4000 Month 3 Month 4 Month 5 Month 6 PREDICTED WET WEIGHT (GRAMS) AGE (MONTHS) Predicted Weight by Age Variety Model (M NGA 11) Fig. 2: Changes in Soil Organic C and total N with time indicates SOC accumulation is root driven. Fig. 3: A prototype multi-array GPR integrated with a Pegasus terrestrial laser scanner for simultaneous 3D imaging of crop root and foliar biomass and architecture INTRODUCTION OBJECTIVES MAIN RESULTS CONCLUSION

INTRODUCTION OBJECTIVES - FAO

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GPR based root and SOC imagingDirk B. Hays

Texas A&M University

Selection of the ideal crops for ourindustrial and food needs shouldconsider not only the value of theharvested above ground products,but also the local and globalenvironmental services it providesin terms of terrestrial carbon (C)phyto-sequestration andimproved soil organic matterenrichment. Selection of idealcrops is well under way. What islacking, however, is highthroughput phenotyping (HTP)and integrated real-time dataanalysis technologies for selectingideal genotypes within these cropsthat also confer recalcitrant highbiomass or perennial root systemsnot only for Carbon phyto -sequestration, but also foradaptation to conservation agro-ecosystems, increasing soilorganic matter and soil waterholding capacity. We propose toachieve a significant advancementin the use of ground penetratingradar (GPR) to phenotype rootbiomass and 3D architecture, andto quantify soil carbonsequestration. GPR functions bytransmitting a broadbandfrequency electromagnetic energysignal into the ground. Bymeasuring signal attenuation andsignal return time, GPR is able todetect different dielectricproperties of unique belowgroundmaterials, i.e., roots vs. soil.Signal returns can be quantifiedon GPS coordinates from aplanned grid of field plots orlandscapes and rendered into a 3-D field, allowing for visualizationand mapping of belowground rootbiomass. In this context, GPR canbe used for genotypic selection inbreeding nurseries and unadaptedgermplasm with favorable rootarchitectures, and for assessingmanagement and nutrientpractices that promote rootgrowth for maximal SOCsequestration.

The objectives of our team is to:i) Empirically define the optimalground penetrating radar (GPR)-antenna array for 3D root andsoil organic carbon imaging andquantification in high biomassgrass systems; and ii) Developnovel 3- and 4-dimensional dataanalysis methodologies for usingGPR for non-invasive crop rootand soil C phyto-sequestration3-D imaging and quantificationwithin a spatially variable soilmatrix.

The project will capitalize on: 1)a diverse set of high biomassperennial and annual genotypesof millet, napier grass andsorghum, and 2) three high soilorganic carbon multi-decade no-till study sites at Texas A&MAgriLife Research Stations.These experimental systems willprovide the required contrastgradients in root and organicmatter to evaluate and advanceGPR technology.

Perennial forages and rowcrops have the potential tosequester significant carbon inthe form of high root biomass.In current systems up to 21.56T C/Ha;

Longterm no-till studies usinghigh biomass sorghum haveshown that increases in SOC isderived almost exclusively byroot biomass;

We have successfully begun touse GPR to phenotype foragesand row crops for higher rootbiomass and SOCsequestration potential.

Long term no-till studies haveshown the increasing SOCsequestration will require afocus on increasing rootbiomass in cultivated crops;

Additionally, internationalefforts should focus onincentivizing or regulatingfarming practices toinstitutionalize no-till practicesas a global effort to increaseSOC sequestration;

An increase in SOC to 1.56% onthe 5.1 B Ha of global crop landwould sequester 80 ppmatmospheric carbon or 167 Gtcarbon.

Fig. 1: Perennial Pearl Millet Napier grassforage: Perennial sorghum 21.56 T C/HaSOC sequestration

Graph 2: Predicted root biomass using derived allometry

Graph 1: Root wet weight as determined by GPR return pixel counts.

Total Nitrogen mg kg-1

600 800 1000 1200

Soi

l Dep

th c

m

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0% Return 201225% Return 201250% Return 20122008

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600 800 1000 1200

Soi

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- N 2012 + N 2012 2008

Total Nitrogen mg kg-1

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RS 2012 SS 2012 2008

Organic Carbon mg kg-1

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RS 2012 SS 2012 2008

(A)

(F)

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RS- rotated sorghumSS- continuous sorghum

-N = O N+N = added N

R² = 0.67

0100020003000400050006000

0 10000 20000 30000 40000 50000 60000

Root

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Wet Weight by Pixel Count (Combined)

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Month 3 Month 4 Month 5 Month 6

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HT (G

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AGE (MONTHS)

Predicted Weight by AgeVariety Model (M NGA 11)

Fig. 2: Changes in Soil Organic C andtotal N with time indicates SOCaccumulation is root driven.

Fig. 3: A prototype multi-array GPRintegrated with a Pegasus terrestrial laserscanner for simultaneous 3D imaging of croproot and foliar biomass and architecture

INTRODUCTION OBJECTIVES MAIN RESULTS

CONCLUSION