KNApSAcKを用いた植物の 効能メカニズム解明のため · PDF file101,443: plant taxonomic class 「双子葉類キク類」「双子葉類バラ類」「その他」に3

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  • KNApSAcK

    H26.03.02

    2014licensed under CC2.1

  • 25 10-

    KNApSAcK

  • () () ()

    ( )

  • Natural Activity

    Metabolite Activity

    Core System

    KNApSAcK Family

  • ( - )

    ( )

    33,707

    101,443

    100

    KNApSAcKFamily

    KNApSAcK

    ( - )

    DB

  • ( - )

    ( )

    MEDICUS

    ( - )

  • ( )

    33,707

    101,443

    1.

    2.

  • PCIDB

  • ( )

    KNApSAcK core

  • KNApSAcK

    ( )

    NCBI taxonomy

    (super)kingdom plant taxonomic class plant family

  • : (super)kingdom

    KNApSAcK

    : 18,313

    77%

    : 1,638 7%

    : 1,579 7%

    : 609 2%

    /: 1,695

    7%

    23,834

    : 84,241

    83%

    : 4,059 4%

    : 5,150 5%

    : 2,707 3%

    /: 5,286

    5%

    - 101,443

  • : plant taxonomic class

    3

    : 6,871 38%

    : 6,130 33%

    : 684 4%

    : 1,425 8%

    : 2,078 11%

    : 1,126

    6%

    18,313

    : 28,603

    34%

    : 30,707

    37%

    : 2,872 3%

    : 5,948 7%

    : 10,208

    12%

    : 5,903

    7%

    - 84,241

  • : plant family

    family

    14%

    11%

    5%

    4%

    51%

    Top11/430: - Fabaceae(): 11,679

    Asteraceae(): 9,441

    Lamiaceae(): 3,946

    Rutaceae(): 3,136

    Apocynaceae(): 2,710

    Brassicaceae(): 2,486

    Apiaceae(): 1,629

    Papaveraceae(): 1,628

    Ranunculaceae(): 1,529

    Annonaceae(): 1,493

    Solanaceae(): 1,489

    : 43,007

  • ( - )

    ( )

    MEDICUS

    ( - )

  • KNApSAcK ChEMBL, CTD

    Standard InChI (ChEMBL) IUPAC (Main Layer)

    CAS (CTD) ID

  • () + PubChem

    >73 >1200 >130

    6,367 2,784

    Release 17 (Aug. 2013)

    Homo sapiens,

    2,784

    Ra us norvegicus,

    773

    Mus musculus,

    678

    others, 2,132

  • Ver. Oct. 2013

    C () G () 53 C (MeSH Term) - G (Entrez gene id) >88 (curated)

    C () D () therapeutic marker/mechanism C (MeSH Term) - D (MeSH Term) >18 (curated)

    G D OMIM therapeutic marker/mechanism >28 (curated)

  • Linked to ChEMBL, 9,487

    Linked to ChEMBL (main layer), 6,173

    No link, 34,388

    KNApSAcK ChEMBL (Standard InChI)

    15,660

    15,660 ChEMBL

    4,712

    Linked to human protein target,

    4,712

    Linked to other protein target, 959

    Linked to target, 8,470

    No target, 1,519

    50,048 KNApSAcK

  • No link, 48,925

    91 448584

    CTD disease 675

    CTD gene1032

    KNApSAcK CTD (CAS )

    1

    1,123

    50,048 KNApSAcK

  • ( )

    KEGG BRITE

    br08003, Phytochemical Compounds

    (KCF-S cluster) KCF-S (GIW2013, Kotera et al.,)

    (phytochemical cluster)

  • phytochemical clusters

    KEGG BRITE : 161

    : 994

    1 2 3 4

    1 2 3 4 5 6,7,8

    84 phytochemical cluster

    KEGG BRITE (br08003, Phytochemical Compounds) A, B, C, D 4 C : 163

    KCF-S cluster 8,955 clusters (3,245 singletons) 10,000 descriptors similarity / clustering cutoff value = 0.7 / 0.5

    phytochemical cluster ( ) 84 clusters 161 994 KCF-S clusters 51% ChEMBL 73%

  • phytochemical clusters

    phytochemical cluster

  • phytochemical cluster

    ( )

    ( )

    KEGG BRITE(Quinolizidine alkaloids)

    KCF-S cluster

  • phytochemical cluster ( )

    KCF-S cluster

  • phytochemical cluster

    ( )

    ( )

    KEGG BRITE(Quinolizidine alkaloids)

    KCF-S cluster

  • KCF-S cluster

    ( )

    ( )

    KEGG BRITE(Quinolizidine alkaloids)

  • ( - )

    [a]MEDICUS

    [b]( - )

    ( )

  • phytochemical cluster ( [a])ChEMBL

    UniProt ID

    KNApSAcK(

    OMIM / KEGG )

  • Entrez gene ID

    CTD

    phytochemical cluster ( [a])

    KNApSAcK

    C00002227

  • ChEMBL/CTD

    ( [a])

    ChEMBL Assay / Activity

  • phytochemical cluster ( [a])

    KEGG DISEASE ID

    ChEMBL

    OMIM phenotype IDID ID

  • ( - )

    [a]MEDICUS

    [b]( - )

    [b]

    ( )

  • CTD

    phytochemical cluster ( [b])

    IDKNApSAcK ID

  • ( - )

    MEDICUS

    ( - )

    KNApSAcK Core

    ( )

  • ( - )

    MEDICUS

    ( - )

    Natural Activity

    ( )

    ( - )

  • Natural Activity

    KNApSAcK

    NCBI taxonomy

    Natural Activity

    (Anticancer)(Antileukemic)

    Species

  • Natural Activity

    Acnistus arborescens C00003676

    P31749 (Akt)

    Species

  • P31749 (Akt)

    Natural ActivitySpecies

    CTD C00003676

  • KNApSAcK NCBI Taxonomy

    KNApSAcK ChEMBL, CTD

    KNApSAcK

    PCIDB( PhytoChemical Interactions DB )

  • MetaMap, UMLS

    ChEMBL CTD ) : KEGG DRUG: KEGG ENVIRON: SIDER

    ChEMBL

    ()

    KNApSAcK KCF-S clusterphytochemical cluster