Lane Medical Library 2016 Medicine CLINICAL RESEARCH TOOLKIT€¦ · MEDICINE : Clinical Research Toolkit Lane Medical Library, Stanford University OCTOBER 2015/CS 4 Step 2: If you

MEDICINE:ClinicalResearchToolkitLaneMedicalLibrary,StanfordUniversityOCTOBER2015/CS

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LaneMedicalLibrary2016Medicine

CLINICALRESEARCHTOOLKIT


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LANEMEDICALLIBRARY:HTTP://LANE.STANFORD.EDU• DIGITALMATERIALS24/7:LaneLibrarysubscribestothousandsofdigitalbooks,journals,videos,

mobileapplications,andotheronlineresources.Availableonandoff-campus(viaSUNETID,orhospitalID)

• SOPHISTICATEDSEARCHOPTIONS:Lane’swebsiteprovidesamultitudeofsearchfiltersandbookmarkingtools.Takeadvantageofthesetogetthemostfromourrichcollectionofdigitaltexts,journals,boardstudymaterials,andmore.

• WEB-BASEDDOCUMENTDELIVERYSERVICES:DigitaldocumentdeliveryofarticlesatnochargetotheStanfordrequestor.Turn-overtimeisrapid,oftenlessthanaworkingday.

• ONLINEORIN-PERSONCONSULTINGSERVICES:Standardresearch/referencequestionsvialivechat,email,orinperson.Literaturereviewsearchsupport(e.g.,systematicreviews,casereports,etc.)atnochargetotherequestor.ExtensiveconsultingsupportonPDF/reference/bibliographyapplicationslikeEndNote,Mendeley,andZotero.

• REGULARINSTRUCTIONALPROGAM:Regular,quarterlyclassesonawiderangeoftopics,forexample:ClinicalResearchToolkit;BasictoAdvancedPubMed;Mendeley,Zotero,andEndNoteWeb;BasictoAdvancedEndNote;BasictoAdvancedGoogle;SystematicReviews;StayingCurrentwiththeLatestBiomedicalResearch;MobileApps-TopBiomedicalandProductivityTools;FindingFunding;DataAnalysis(varioustools);Writing(varioustopics).

• ON-DEMANDWORKSHOPS:Customizedpresentationsforyourdepartment/division.Contenttypicallyfocuseson8generaltopics(seebelow)withsearchexamplesspecifictoagroup’sresearchinterests.

QUICKLYFINDJOURNALS,BOOKS,VIDEOS,ANDARTICLESLANELIBRARYWEBSITE:YoucanusethedefaultLaneSearchtolocatespecificbooks,journals,videos(includingEDGRANDROUNDS),andindividualarticles.BecauseLaneSearchsearchesPubMed,SCOPUS,andtheLaneCatalog,youcanuseittoquicklylocatebooks/articles/journalsonaparticulartopic.MYLANE:YoucanactivateyourMyLaneaccountanduseittobookmarkdatabases/ebooks/etc.thatyouusefrequentlyfromLane(oranyotherwebsiteifyouusethebookmarklet).Howdoesitwork?LogintoLane,thenhoveroveralink,e.g.,MDCALCandyou’llseeastar–clickthestartoaddabookmarktotheresourcetoyourpersonalbookmarks.Clickon“MyBookmarks”forinstructionsonhowtoaddtheLanebookmarklettoyourbrowserforaddingnon-LanewebsitestoyourLanebookmarklist.EXAMPLES:

• Locateandbookmark:Callen:UltrasonographyinObstetricsandGynecology• Locateandbookmark:Williamsobstetrics• Locateandbookmark:Obstetricemergencies(limittoVideo)

DOCXPRESS,NeedanarticleorbookthatweStanforddoesn’town?RegisterwithDocXpress:http://docxpress.stanford.eduandwe’llhelpyougetit!

STEP1

LANELIBRARYRESOURCESANDSERVICES

CLINICALRESEARCHTOOLKIT


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EXAMPLE:

• TheZavanellimaneuver--backtothewomb.ClickontheStanfordicon,thentheLaneDocXpresslinktoorderit.We’llgetitatnochargetoyou!

LANESEARCHENGINES:InadditionLaneSearch,theoffersahalf-dozenothersearchengines:

• Clinical/PICO:Designedspecificallyfortheclinician,itfindsclinicalevidencefromPubMed,UpToDate,Cochrane,DARE,BMJandmore

• Pediatrics:SimilartoClinical/PICOwithanemphasisonpediatricsresources• Bioresearch:SimilartoClinical/PICOwithanemphasisonmolecularbiologyresources(methods,

protocols,etc.)• Bio-Image:Searches9separatebio-imagecollectionsandfiltersresultsbasedonpermissions.• BassettAnatomy:3-Dphotographicimagesdatabaseofanatomicalimagesofthehumanbody• Textbooks:Searches134textbooksin27specialties.

SPECIALTYPORTALS:Youcanuseportalstoaccesscollectionsofresourcescustomizedforaparticulardepartment,division,orclinicalunitCLASSES:Weprovideclassesonavarietyoftopics,visitourclasses’pagetoviewupcomingclasses,orourcoursevideoarchive:http://lane.stanford.edu/classes-consult/index.htmlGETTINGHELP,ASKINGFORSTUFF:Use“LiveChat”or“AskUs”ifyouhaveaquestion.Wanttoprovidefeedback,includingrequestingthatwepurchaseabookorsubscribetoajournal?Usethe“Feedback”tab.Youcanalsoaskforhelpfromyourdivisions/department’slibraryliaison:http://lane.stanford.edu/about/liaisons.htmlPUBMEDMADEEASY-ish!FINDINGBETTERARTICLESFASTER

PubMed:UsethePubMedlinkonLane’shomepage(alwaysdothiswhenyougotoPubMedinordertogetaccesstothe“Stanford”linktofulltext).Beforeyoustart,it’sgoodtoreviewthefollowingfeaturesandsearchtacticsforPubMed…• MYNCBIAutoalerts:CreateaMyNCBIaccounttosaveyoursearchandsetupanalertservice.New

referencesthatareaddedtoPubMedwillbeemailedtoyou.• OPERATORS:ThekeyPubMedsearchoperatorsare“AND,”“OR,”“NOT.”TheyMUSTbeinuppercase• WILDCARDSearch:Usetheasterisk*asawildcardfortermvariants,e.g.,allerg*getsyouallergy,allergic,etc.• PHRASESearch:Usequoteswhenlookingforaphrase,e.g.,“epiduralhematomas”• TAGFOREASYTITLESearch:TITLEsearchingisanincrediblyeffectiveinitialstrategyasitquickly

retrieveshighlyrelevantcitationsthatyoucanbuildfrom.Usethe[ti]tagnexttoawordorphrasetolimittotitle,e.g.,antibiotics[ti]ANDsurger*[ti]ANDappendicit*[ti]

• ADDITIONALTAGS:[tiab]Title/Abstract,[mesh]MedicalSubjectHeadings,[jour]Journal,[tw]Title/Abstract/Mesh/authorkeywords.

• MESHSearch:MedicalSubjectHeadings(mesh)areformaltermsorexpressionsforadisease,drug,organism,studytype,medicalspecialty,etc.Forexample,laryngealmasks[mesh]runsasearchofPubMedforarticlesrelatingto,well,laryngealmasks!

Step1:Let’sseeifwecanlocatearticlesrelatingtomanagingchorioamnionitis.Startbyidentifyinganyarticlewithtermsrelatedtochorioamnionitis,treatment,andmanagementinthetitle.Youcanusethe*asteriskasawildcardtogetmoreresults.Forexample:chorioamnionitis[ti]AND(treat*[ti]ORmanage*[ti])

STEP2


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Step2:Ifyouseeaparticularlygoodarticle,youcanusethereference’s“Relatedcitations”linktofindothers.ThisemploysPubMed’srelevancyrankingalgorithm.Step3:Let’stryanotherpowerfulPubMedsearchtool:MedicalSubjectHeadings(MeSH).MeSHcanbeextractedfromanyfullyindexedreference,however,itMUSTbelabeledasà[PubMed-indexedforMEDLINE].TolocatetheMeSHterms,clickonthetitleofthebestreference.Nextclickon“MeSHTerms,”scantheterms,andmakeanoteonwhichseemmostrelevant.Thenaddeachmeshtermtothesearchboxfollowedbythe[mesh]tag:e.g.,“Chorioamnionitis/drugtherapy”[mesh[Then,use“Filters”tonarrowyoursearch.• Download:DownloadthereferencesintoEndNote,Mendeley,orZoteroorPaperPile• MoreDatabases:Thenwhat?Afterdownloading,you’llneedtothinkaboutotherplacestosearch.CHOOSEANAPPTOMANAGEYOURREFERENCES/PDFS/BIBLIOGRAPHIESEFFICIENTLYManagingreferences/PDFs/bibliographies:Ifyouhaven’tdonesoalready,youshouldselectanapplicationthatcanorganizeyourreferences,PDFs,webpages,andbibliographies.The“bigthree”hereattheStanfordSchoolofMedicineareEndNote,ZoteroandMendeley.Itisstronglyrecommendedthatyouselectoneormoreoftheseprogramsastheycansaveyoutime(tonsoftime).YoushouldNEVERcreateabibliographybyhandagain.Ever.

ENDNOTE• NEW:Manuscript“recommender”called“Match.”WorkswithEndNoteWebviamyendnoteweb.com• Description:Endnoteisarguablythemostpowerfulreference/PDF/bibliographymanageravailableat

Stanford.BothMacandWindowscompatible,EndnotecanorganizereferencesfromPubMed,retrievearticlesautomaticallyforthosereferences,andthengenerateauto-formattedbibliographies.

• Download:Loadthefreefull-versiontrialhere:http://endnote.com/downloads/30-day-trialo Goto“Preferences/FindFullText”andput,http://sfx.stanford.edu/local?sfx.directlink=off&inthe

“OpenURLPath”boxo Next,addhttp://lane.stanford.edu/secure/login.html?url=%2Fhelp%2Freferences.htmltothe“URL”

boxifyou’reworkingfromhome.• ImportingReferences:ForPubMed,selectthereferencesyouwanttodownloadbyclickingin

reference“checkboxes.”Youcanalsodownloadallreferencesbynotclickingonanycheckboxes.Next,inPubMed,choose“SendTo,”clickon“File,”clickon“Format”andchoose“MEDLINE,”clickon“CreateFile.”Ifyou’reusingFirefox,you’llbeaskedifyou’dliketoopenwithanapplication,sochoose“EndNote”toopenthefiledirectly.Otherwise,downloadthefiletoyourharddriveanduseEndNote’s“Import”functionbychoosing“Import”andselectingthedownloadedfile,then“ImportOption,”then“OtherFilters”andthen‘PubMed(NLM).”Youcanthenimportthedownloadedfile.

• Tutorial:Lotsareavailable(e.g.,“HowtouseEndNotein7minutes”)here:http://endnote.com/if/endnote-video-training

• Purchase:TopurchasethefullprogramthroughStanfordBookstore($90.00)visit:http://www.stanford.edu/group/bookstore/SUprices/softwarecart.html

MENDELEY• Description:Excellent,freeapplicationprovidesdesktopclientandpersonalwebspace.Compatible

withMac,Windows,Linux.Stanfordhasasitelicense.Storageandbackupofyourpapersandcitations(7GB).Youcancreatepublicandprivategroupstosharepapersandcitations(10privategroups/15userspergroup).Citationstylesfor+1000journals.GeneratecitationsandbibliographiesinMicrosoftWord,OpenOffice,andLaTeX.

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• Download:StartusingbuildingyourMendeleyaccounthere:https://www.mendeley.com/groups/2444891/stanford-university/

• ImportingReferences:ForPubMed,runyoursearch,andthenusetheMendeleyImportadd-ontoimportthereferences.Youmayhavetoedityourpop-upblockertoallowpop-upsfromwww.mendeley.com

• Settings:Under“Tools”youcaninstallthewebimporterandthewordplugin.• Tutorial:Tutorialsarehere:http://www.mendeley.com/videos-tutorials/• Purchase:FREE!

ZOTERO• Description:Excellent,freeapplicationthatworksasawebbrowserplug-inorseparateclient.Terrific

forgrabbingitemsofftheweb(references,webpages,somePDFs).WorksforMacandWindows.YoucanuseittocreateGroupsthatyoucanthensharewithothers.

• Download:o Step1:Createanaccounthere:http://zotero.org.o Step2:Downloadthe"ZoteroforFirefox"pluginhere:http://www.zotero.org/downloadIf

youdon'thaveFirefox,simplydownloadit.o Step3:Downloadtheplug-inforyourwordprocessorhere:

https://www.zotero.org/support/word_processor_plugin_installationo Step4:WhenZoterointegratesintoFireFox,you’llseeanew"Z"Zoteroiconintheupper

rightregionofyourbrowser.Clickthe"Z"toactivateZoteroo Step5:IneitherPubMedorGoogleScholar,runasearch.Onceyougetsomeresults,you'll

nowseeasmall,yellowfoldericonnearthe"Z"icon.Clickthis,andchoosethereferencesyouwanttosave.

o Step6:ForaccessingPDFs:§ Goto“Actions/Preferences/Advanced”andaddthefollowingURLtothe

"OpenURL/Resolver"box:http://sfx.stanford.edu/local?sfx.directlink=off&§ Youcanthenusethelittlegreenarrow“Locate”pull-downtochoose“Library

Lookup”tofindthearticleo Step7:OpenMSWordandcreateanewdocument.YoushouldseeZoterooptionsunder

"Add-ins."• Tutorial:Tutorialsarehere:http://www.zotero.org/support/screencast_tutorials• • ImportingReferences:ForPubMed,runyoursearch,thenclickonthesmall,yellowfoldericonintheaddress

fieldofyourbrowsertoselectthereferencesyouwanttodownload.• Settings:ForaccessingPDFs:

o Goto“Actions/Preferences/Advanced”andput,http://sfx.stanford.edu/localinthe“Resolver”boxo Youcanthenusethelittlegreenarrow“Locate”pull-downtochoose“LibraryLookup”tofindthe

article• Tutorial:Tutorialsarehere:http://www.zotero.org/support/screencast_tutorialsPurchase:FREE!UnlessyouwantextraspaceontheZotero

PAPERPILE • Description:Excellent,fee-basedapplicationthatorganizesyourreferences,webpages,andPDFs.

WorksonChromeonly.AllowsyoutocollaborativelyeditGoogleDocs!• Download:Createafreetrialsaccount.• ImportingReferences:ProvidesanAddPaperoptiontoimportreferencesfromPubMed,GoogleScholar,etc.• PDFS:Canauto-downloadPDFs• Tutorial:Tutorialsareavailablehere:https://paperpile.com/help#guide-getting-started


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• Purchase:Academicprice,$2.99permonth• serverBEYONDPUBMED!EXPLORINGOTHERDATABASES

ChoosingDatabases:AsaStanfordaffiliate,youhaveaccesstoanamazingarrayofelectronicdatabasesanddatabanks.Notsurewheretostart?ContactaresearchlibrarianatLaneLibrary.Here’salistofotherdatabasestoconsider(typethenamesintoLaneSearchtopullthemup):• SUSearchWorks:http://searchworks.stanford.eduDatabaseofallStanforddatabases,books,etc.• StanfordxSearch:http://xsearch.stanford.eduSearchesmultipleSUdatabasesandotherresources• WEBOFSCIENCE:Multi-disciplinary,includesdatabasesonengineeringInspec,andpatents,Derwent.• SCOPUS:Agiant,multi-specialtydatabasethatcoverseverythingfromastronomytourology.Perfect

forcatchingarticlesthatotherwisewouldslipthroughthecracks.Youcanalsosortresultsbycitationcount.

o Chorioamnionitiso ChorioamnionitisAND“cerebralpalsy”

• GraduateSchoolofBusinessLibrary:HealthCarehttp://libguides.stanford.edu/healthcare-industry

o MarketResearch.Como ABI/INFORM:Thekeydatabaseinbusiness

• ERIC:Adatabaseofallthings“educational.”• PolicyFile:Publicpolicyresearchandanalysisfromthinktanks,universityresearchprograms,

researchorganizationsandpublishers.medicalhomeoraffordablecareexecutivesummary• PsycInfo:Adatabaseofarticlesandbookchaptersonalltopicsrelatedtopsychology,including

variouspsych-orientedscales,surveysandquestionnaires.• SocialServicesAbstracts:LiteraturerelatedtoallaspectsofsocialworkandsocialservicesGOOGLETIPS!EXPANDTHESEARCHWITHGOOGLEAND/ORGOOGLESCHOLARStandardliteraturedatabasesmaymissusefulinformationonyourresearchtopic,perhapsbecausetheitemisameetingabstract,awebsite,orasliverofinformationburiedinthefull-textofanarticle.That’swhyit’sgenerallyprudenttoconsiderrunningsupplementalsearchesinGoogleand/orGoogleScholar.GOOGLE:FILETYPE:PPTandmore.Youcanlimitsearchestocertaintypesoffiles,e.g.,PPT,DOC,PDF.

• simulationobstetricfiletype:pptGOOGLE:SITE:Whenawebsite’ssearchenginefeels“underpowered,”youcanuseGoogle’s“SITE:”optiontosearchthewebsitefromwithinGoogle.Forexample,doestheWorldHealthOrganizationprovideanyreportsonmedicaltechnologiesindevelopingcountries?

• postpartumcarecorrectionalsite:acog.org• residenthoursoutcomesfiletype:pptsite:ucdavis.edu• “Humantrafficking”screeningvalidatedsite:.gov

GOOGLESCHOLAR:DEEPSEARCHING:http://scholar.google.comRunadeepsearchofmanyfull-textarticleswithGoogleScholar.It’saterrificwaygettingattermsorphrasesthatdon’tshowupintitlesorabstractsintraditionaldatabaseslikePubMed.simulationresuscitationneonates

STEP4

STEP5


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Downloading:GoogleScholarhasa“Settings”iconontheinitialpagethatwillallowyouactivatean“ImporttoEndNote”linkonyoursearchresults.COOLPICTURES!ENHANCINGYOURRESEARCHWITHIMAGES

e-Anatomy:Connecttothebodyregionofinterest,thenuseyourmouse-wheeltorollthroughlayersofMRIandCTimages.Verypopularwithradiologistsandsurgeonsasateachingtool.Searchfore-anatomyintheLaneSearchbox.

AnatomyTV:Similartoe-Anatomywithmodulesfocusedonbodyregions.Truly3-Dinthatitallowsviewingbylayer,rotation,zoom-in/zoom-out.SearchanatomytvintheLaneSearchbox.

STEP6


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LaneLibraryIMAGESSearch:Searchesmultipleimageresources,includingtheBassettCollection,theWellnessInstitute,PubMedCentral,etc.,andfiltersbasedonimagereusepermissions.

KEEPINGUPWITHTHELATESTRESEARCHINMEDICINE

NEWENGLANDJOURNALOFMEDICINE“JOURNALWATCH:”Access:typejournalwatchintotheLaneSearchbox.JournalWatchreviewsover250scientificandmedicaljournals.Thephysician-editorssurveyhigh-impactmedicaljournalsin13specialtyareastoidentifykeyfinding.Thesummariesarepresentedwithaclinicalperspectiveandexpertcommentary.Afterregistering,userscanreceivespecialtyORtopicupdatese.g.,HOSPITALMEDICINE,amedicalnewsletter,andnewCMEexams.Caution:youcancreate

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alertsbasedonbroadsubjectareas,e.g.,cardiology,butnotonnarrowersearchterms,e.g.,tetralogyoffallot.

BROWZINE:Instructionsfordownloading:http://tinyurl.com/p9d7vwlFind,read,andmonitorthousandsofscholarlyjournalsavailablefromyouruniversityorcollegelibrary,orthroughOpenAccesspublishers,coveringalldisciplines.Browsetitlesbysubjecttoeasilyfindjournalsofinterest;easilyviewtableofcontentsofcurrentpastjournals;createapersonalbookshelfoffavoritejournals;savearticlestoZotero,Dropbox,andotherservices;sharewithotherresearchersbypostingtoFacebook,Twitterandmore.iPadonly.

GOINGMOBILE!SOMEPOPULARAPPS…

UPTODATEAnywhere:• ForAndroid,iPhone,iPad,andWindows8• (http://laneproxy.stanford.edu/login?url=http://www.uptodate.com/online).Onceyou’ve

obtainedausernameandpassword,downloadtheappforyourparticulardevice,i.e.• iPhone®andiPad®:DownloaduptodateattheAppStore℠• Android™:DownloaduptodatefromGooglePlay• Windows8tablet:DownloaduptodatefromtheWindowsStore• FormoreinfoonUTDmobilefeatures,visit:http://www.uptodate.com/home/uptodate-mobile-access• UpToDateAnywhereisdistinctfromUpToDateMobileCompletewhichactuallydownloadstheUTD

contenttoyourdevicebutisonlyavailableforindividualsubscribers.• IMPORTANT:InordertomaintainremoteaccesstoUpToDate,youmustloginto

www.uptodate.com/loginfromaStanfordinternetconnectionevery30days.ThisiscurrentlyarequirementofUTDanddemonstratesyourcontinuedaffiliationwithStanford.

STEP9


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DYNAMED• Fromsomewhereoncampus,sitdownwithyourphoneandalaptop/desktopandgoLane'swebpage,

http://lane.stanford.eduandselectDynamedfromtheTopBiomedicalResources(blackblockonrightsideofhomepage).

• OnceinDynamed,choosetheMobilelinkinthebluemenubaratthetopofthepage.• Youwillbepromptedforyouremailaddresstogetinstructionsforobtainingtheapp.• Dynamedwillemailyouimmediately.Opentheemailonyourphone.• Theemailwillcontainanauthenticationlinkthat,whenyouselectitfromyourphone,willallowyouto

accesstheappcontent.Notethatwhenyouopentheappforthefirsttime,youwillneedtoselectUpdateatthebottomofthescreentodownloadthecontent.

• YoucanalsofindthisinformationinDynamed’sappFAQs:http://support.ebsco.com/knowledge_base/detail.php?id=3923

SHCFORMULARYANDLPCHHOUSESTAFFMANUAL:• ConnecttoLexiCompfromLaneLibrary’shomepage:http://lane.stanford.edu• OnceinLexiComp,clickontheMobileAppAccesslinkandfollowtheinstructionsforyourdevice

(includingregistrationifyouhaven’tdonesoalready)• OnceLexiCompcompletestheinitialinstallationprocess,you’llbeaskedtoupdatewithanumberof

resources,includingSHCFormularyandtheLPCHHousestaffManual

MOREONMOBILEAPPS• PediStat:http://www.qxmd.com/apps/pedi-stat-for-iphone-android• DouseLane’soptimizedmobilewebsite,simplyconnectviaamobiledevicetohttp://lane.stanford.edu

ADDITIONALTOOLSLinkstosurveytools,datatransferutility,andaStanfordclinicalresearchsupportwebsite.

• QUALTRICS:http://stanforduniversity.qualtrics.comSurveys• MedSecureSend:http://mss.stanford.eduFilesharing(secure)

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CONTACTINFORMATION

ChristopherStave,MLSInstructionalandLiaisonProgramCoordinatorLaneMedicalLibrary300PasteurDriveStanfordUniversityStanford,[email protected]

Documents

Lane Medical Library 2016 Medicine CLINICAL RESEARCH TOOLKIT€¦ · MEDICINE : Clinical Research Toolkit Lane Medical Library, Stanford University OCTOBER 2015/CS 4 Step 2: If you