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Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology Artificial Intelligence in Radiology

Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

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Page 1: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Naveen Garg, MDAssociate Professor

Abdominal Imaging Section

Department of Diagnostic Radiology

Artificial Intelligence in Radiology

Page 2: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

• Owner of Garglet LLC

• Advisor for Enlitic Inc.

Disclosures

Page 3: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

The possibility of AI doing radiology

Page 4: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Tesla autopilot

Page 5: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

maskrcnn

Page 6: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

AI Winters

Page 7: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Increases in computing power

Page 8: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

NVIDIA Stock price

Page 9: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Rise of Cloud computing

Page 10: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Venture Capital Funding of medical imaging AI companies over time

Page 11: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Number of Medical Imaging AI Companies Founded by Year

Page 12: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

AI Investments over time

Page 13: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Venture Capital funding of AI in radiology

• 2017 - $270 million

• 2018 - $580 million

Page 14: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Commercial software for Radiology AI

Page 15: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

ACR AI Lab

Page 16: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Bone age from hand x-rays

Page 17: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Detecting Pneumonia

Page 18: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Starting to see FDA Approvals

Page 19: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Pneumothorax triage

Page 20: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology
Page 21: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Youtube dataset

Page 22: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Patient data across hospitals in epic

Page 23: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Facebook Libra stablecoin

Page 24: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

HPC: inhouse vs. cloud

Page 25: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

XSEDE national supercomputing center

Page 26: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Fast.ai

Page 27: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Milestones in Artificial Intelligence

• Computers beat humans at chess (1997)

– IBM Deep Blue vs. Kasparov

• Computers beat humans at jeopardy (2011)

– IBM Watson vs. Rutter and Jennings

• Computers beat humans at go ! (2016)

– Google DeepMind's AlphaGo (version: Lee)[56] defeated Lee Sedol 4–1.

• AlphaZero beats StockFish at chess (2017)

Page 28: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Milestones in AI datasets

• MNIST: 70,000 handwritten digits (1998)

• Imagenet: 14 million hand annotated images (2009)

• DeepLesion: 40,000 recist tumor measurements (2018)

• MIMIC-CXR: 371,000 chest xrays (2019)

Page 29: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Garglab Search Tools

Page 30: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Data

Source Since millions of reports gigabytes

Radiology 2000 6.3 9

Pathology 2000 7.8 7

Transcribed Documents 1993 16.4 121

Labs 2000 269 90

Page 31: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Data warehouse

– Electronic health records database

• Radiology reports

• Pathology reports

• H/P’s, op notes, discharge summaries etc.

• Labs

– Dicom

• headers

• presentation states / annotations

• Images

Page 32: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Example Data lake for Radiology AI

– 1.5 million patients

– 10 million radiology reports

– 2 million presentation states

– 5 million annotated key images

Page 33: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Server

Servervirtual processors RAM

Terabytes of storage video ram cuda cores

Garglab 32 768 gb 10 12 gb 2500

Page 34: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Features

• Cohort Identification

• Natural Language processing

• Sentence analysis

• Numeric range search

• Lesions size

• site of radiation

• relative time points

Page 35: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Rad Path Cross Search

Page 36: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Clinical Documents and Labs

Page 37: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology
Page 38: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology
Page 39: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology

Sample Queries

• melanoma – Path proven

– treated with ipilimumab

– had an FDG PET-CT.

• Liver masses– Ct abdomen with contrast

– liver lesions 1 to 2 cm in size

• breast cancer – Recurrent

– Invasive ductal

– Triple negative

– Family history of colon cancer

• Cholangiocarcinoma– Had radiation to the liver

– Mri before and after radiation

Page 40: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology
Page 41: Naveen Garg, MD - AMDISamdis.org/wp-content/uploads/2019/06/Imaging-AI_Garg.pdf · Naveen Garg, MD Associate Professor Abdominal Imaging Section Department of Diagnostic Radiology