1
This project forms part of an EU funded project entitled “Healthy Hay”; the re-invention of sainfoin: an example of a novel resource for sustainable agriculture. A new sainfoin breeding programme has been initiated. NIAB is evaluating the agronomic and morphological characters of a germplasm collection and the genetic characterisation as been initiated. Partners are currently assessing our plant material for biological, environmental impact and tannins characterisation and quantification. INTRODUCTION Onobrychis sp. seeds Molecular Markers for Phylogenetics of Onobrychis Species Christine Hayot 1 , Ilya Gadjev 1 , Lydia Smith 1 and Terry Brown 2 1 National Institute of Agricultural Botany, Huntingdon Road, Cambridge, CB3 0LE, UK 2 Faculty of Life Sciences, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK Acknowledgements: These investigations were supported by the European Commission (Project MRTN-CT-2006-035805). PHENOTYPIC CHARACTERISATION : a great diversity within and between accessions observed • Field evaluation on replicated 1.5 m 2 plot on agronomic (yield, re-growth, flowering time, survival, diseases and pests) and morphological characteristics (inflorescence, leaf, stems, habit and homogeneity) Differences in inflorescence colour Differences in leaf colour and shape Erect plant green stems vs prostrate plant red stems Sainfoin with Fusarium sp. show desiccated leaves, then senescence KARYOTYPING STUDIES ONOBRYCHIS VICIIFOLIA • A fodder legume with a long cultivation history • Agronomic potential: low-input crop, soil improving crop • Biological potential: High nutritional value, high palatability, non bloating forage, anthelmintic properties, reducing methane outputs from ruminants •Ornamental flowers attracting wide range of insects. Allow production of high quality honey GERMPLASM COLLECTED • 355 accessions of Onobrychis sp. • Most are O. viciifolia: wild and cultivated, giant and common types O. viciifolia flower pollinated by bumblebee Provenance of accessions on Köppen climate map Mostly accessions of O. viciifolia are tetraploid (whether giant or common) but a few of the wild types are diploid O. viciifolia genome size of about 2.5pg 0 200 400 600 800 1000 0 20 40 60 FL3 - counts 0 200 400 600 800 1000 0 20 40 60 FL3 - counts 1 2 Determination of genome size using Zea maize as a reference and PI as staining agent Sample 2C value = Reference 2C value * Sample G1 mean peak position (1) Reference G1 mean peak position (2) Ploidy of other Onobrychis sp. also investigated 14/28 Diploid/Tetraploid Onobrychis O. viciifolia 28 Tetraploid Onobrychis O. transcaucasica 14 Diploid Heliobrychis O. subacaulis 14 Diploid Hymenobrychis O. radiata 14 Diploid Onobrychis O. petrea 28 Tetraploid Onobrychis O. montana 28 Tetraploid Onobrychis O. iberica 28 Tetraploid Onobrychis O. gracilis 28 Tetraploid Onobrychis O. cyri 16 Diploid Lophobrychis O. crista-galli 28 Tetraploid Onobrychis O. bungei 28 Tetraploid Onobrychis O. biebersteinii 14/28 Diploid/Tetraploid Onobrychis O. arenaria 28 Tetraploid Onobrychis O. antasiatica 28 Tetraploid Onobrychis O. altissima 14/28 Diploid/Tetraploid Lophobrychis O. alba 16 Diploid Lophobrychis O. aequidentata Chromosomes Ploidy observed Section Species FINGERPRINTING • Capillary electrophoresis based AFLP fingerprinting work is ongoing - Polymorphic regions observed - Specificity and discriminatory power of the system needs improvement • The taxonomy of the Onobrychis genus is being investigated, many of the species appear to be sub-species • Phylogeny will allow to gain knowledge on cultivation history of O. viciifolia Example of 7 polymorphic regions between 3 samples with one similar primer combination Eco+3 Mse+3 0 200 400 600 800 1000 0 40 80 FL4 - counts 0 200 400 600 800 1000 0 40 80 FL4 - counts 0 200 400 600 800 1000 0 20 40 60 FL4 - counts 0 200 400 600 800 1000 0 20 40 60 FL4 - counts Tetraploid vs diploid O. viciifolia revealed by flow cytometry confirmed by microscopy G1 G2 G1 G2 2n=2x=14 2n=4x=28

Onobrychis Species€¦ · Molecular Markers for Phylogenetics of Onobrychis Species Christine Hayot1, Ilya Gadjev1, Lydia Smith1 and Terry Brown2 1 National Institute of Agricultural

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Page 1: Onobrychis Species€¦ · Molecular Markers for Phylogenetics of Onobrychis Species Christine Hayot1, Ilya Gadjev1, Lydia Smith1 and Terry Brown2 1 National Institute of Agricultural

This project forms part of an EU funded project entitled “Healthy Hay”; the re-invention of sainfoin: an example of a novel resource for sustainable agriculture. A new sainfoin breeding programme has been initiated. NIAB is evaluating the agronomic and morphological characters of a germplasm collection and the genetic characterisation as been initiated. Partners are currently assessing our plant material for biological, environmental impact and tannins characterisation and quantification.

INTRODUCTION

Onobrychis sp. seeds

Molecular Markers for Phylogenetics of Onobrychis Species

Christine Hayot1, Ilya Gadjev1, Lydia Smith1 and Terry Brown2

1 National Institute of Agricultural Botany, Huntingdon Road, Cambridge, CB3 0LE, UK 2 Faculty of Life Sciences, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK

Acknowledgements: These investigations were supported by the European

Commission (Project MRTN-CT-2006-035805).

PHENOTYPIC CHARACTERISATION : a great diversity within and between accessions observed• Field evaluation on replicated 1.5 m2 plot on agronomic (yield, re-growth, flowering time, survival, diseases and pests) and morphological characteristics (inflorescence, leaf, stems, habit and homogeneity)

Differences in inflorescence colour Differences in leaf colour and shape Erect plant green stems vs prostrate plant red stemsSainfoin with Fusarium sp. show

desiccated leaves, then senescence

KARYOTYPING STUDIES

ONOBRYCHIS VICIIFOLIA

• A fodder legume with a long cultivation history

• Agronomic potential: low-input crop, soil improving crop

• Biological potential: High nutritional value, high palatability, non bloating forage, anthelmintic properties, reducing methane outputs from ruminants

•Ornamental flowers attracting wide range of insects. Allow production of high quality honey

GERMPLASM COLLECTED• 355 accessions of Onobrychis sp.

• Most are O. viciifolia: wild and cultivated, giant andcommontypes

O. viciifolia flower pollinated by bumblebee Provenance of accessions on Köppen climate map

Mostly accessions of O. viciifolia are tetraploid (whether giant or common) but a few of the wild types are diploid

O. viciifolia genome size of about 2.5pg

0 200 400 600 800 10000

20

40

60

FL3 -

cou

nts

0 200 400 600 800 10000

20

40

60

FL3 -

cou

nts

1

2

Determination of genome size using Zea maizeas a reference and PI as staining agent

Sample 2C value = Reference 2C value * Sample G1 mean peak position (1)Reference G1 mean peak position (2)

Ploidy of other Onobrychis sp. also investigated

14/28Diploid/TetraploidOnobrychisO. viciifolia

28TetraploidOnobrychisO. transcaucasica

14DiploidHeliobrychisO. subacaulis

14DiploidHymenobrychisO. radiata

14DiploidOnobrychisO. petrea

28TetraploidOnobrychisO. montana

28TetraploidOnobrychisO. iberica

28TetraploidOnobrychisO. gracilis

28TetraploidOnobrychisO. cyri

16DiploidLophobrychisO. crista-galli

28TetraploidOnobrychisO. bungei

28TetraploidOnobrychisO. biebersteinii

14/28Diploid/TetraploidOnobrychisO. arenaria

28TetraploidOnobrychisO. antasiatica

28TetraploidOnobrychisO. altissima

14/28Diploid/TetraploidLophobrychisO. alba

16DiploidLophobrychisO. aequidentata

ChromosomesPloidy observedSectionSpecies

FINGERPRINTING

• Capillary electrophoresis based AFLP fingerprinting work is ongoing

- Polymorphic regions observed

- Specificity and discriminatory power of the system needs improvement

• The taxonomy of the Onobrychis genus is being investigated, many of the species appear to be sub-species

• Phylogeny will allow to gain knowledge on cultivation history of O. viciifolia

Example of 7 polymorphic

regions between 3 samples with one

similar primer combination

Eco+3 Mse+3

0 200 400 600 800 10000

40

80

120

FL4 -

cou

nts

0 200 400 600 800 10000

40

80

120

FL4 -

cou

nts

0 200 400 600 800 10000

20

40

60

FL4 -

cou

nts

0 200 400 600 800 10000

20

40

60

FL4 -

cou

nts

Tetraploid vs diploid O. viciifolia revealed by flow cytometry confirmed by microscopy

G1

G2

G1

G2

2n=2x=14

2n=4x=28