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OpenSim Description, Status, and Plans Science Advisor Workshop June 1-2, 2006. Clay Anderson , Ayman Habib, Pete Loan, and Scott Delp. What is OpenSim?. Object-Oriented Framework for the Simulation, Control, and Analysis. OpenSim, Gait Workflow. OpenSim API. CVODE, RootSolve, SQP, SA, - PowerPoint PPT Presentation
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OpenSimDescription, Status, and Plans
Science Advisor WorkshopScience Advisor WorkshopJune 1-2, 2006June 1-2, 2006
Clay Anderson, Ayman Habib, Pete Loan, and Scott Delp
What is OpenSim?
M o d e l i n gPhysics, mathematics, logic
Ap p l i c a t i o n sProblem solving
Co mpu t a t i o nResource management
SimTK.or g
Developers:Clay Anderson (Framework)Ayman Habib (Applications)Peter Loan (Musculographics / SIMM)
OpenSim API
OpenSim, Gait Workflow
CVODE, RootSolve, SQP, SA,LAPACK, Simbody
Saryn Goldberg, May Liu, Ilse Jonker, Jen Hicks, Chand John, … … … …
Object-Oriented Framework for the Simulation, Control, and Analysis
Original Plan (Nuclear Bomb)
Chief Design Goals
• Speed
• Shareable code
• Extensibility
• Different Entry Levels– Algorithms
– Modeling API
– Scripting
– Graphical User Interface
Matlab!
Simbody
RKF 5-6 CVODE …
OpenSim API
Some Code
• Like SIMM Dynamics Pipeline but using C++.
• Platform independent– Windows
– Mac
– Linux
– Other Unix flavors
• CMake is a cross-platform compile system (www.cmake.org)
• Swig is an automated wrapper generation facility– Java
Lowering the barrier for developers and users
• Examples– Sample code
– Templates for extending OpenSim (analyses, actuators, controllers)
• Documentation– OpenSim Developer’s Guide
– OpenSim API Reference (Doxygen)
• Streamlined installation
• Training– Workshops directed at solving your problems
• Graphical User Interface (GUI)
Making Simulation Accessible- OpenSim GUI
3D Visualization using VTK
Command and Scripting Window
Animation Playback
Data, Model,and Simulation
Navigator
Simulation Progress Plotting
Investigations and Workflows
• Investigation- equivalent to something you’d normally
write in a main routine– Optimization study
– Inverse dynamics study
• Workflow- a set of investigations– Gait Workflow
– Subject-specific Simulation Workflow
Gait Workflow
Step -1
Preprocess Experimental Data
Execution of the Gait Workflow currently
% scale –Setup 900045_setup_scale.xml (seconds)
% ik –Setup 900045_setup_ik.xml (minute)
% rra –Setup 900045_setup_rra.xml (10 minutes)
% cmc –Setup 900045_setup_cmc.xml (10 minutes)
% perturb –Setup 900045_setup_perturb.xml (hours)
Should we develop facilities for executing workflows in a GUI?
– Main OpenSim GUI
– Stand-alone wizard
Preliminary Release Schedule
April 2006 OpenSim 0.5 (alpha)
June 2006 OpenSim 0.6 (alpha)• Use of OpenSim name space
• Consistency in class names and file storage
• Dependent on SIMM and SDFast
Sept 2006 OpenSim 0.7 (alpha)• API supports SIMM modeling features,
switching dynamics engines and integrators
• SIMM muscles native
• GUI for visualizing models with muscles
• Wizard for executing the gait workflow
Dec 2006 OpenSim 0.8 (alpha)• Simbody and CVODE available in OpenSim
• 80% of SIMM modeling features in GUI
• No more dependence on SIMM / SDFast
documenting and testing
Mar 2007 OpenSim 0.9 (beta)• Streamlined installation
documenting and broader testing
June 2007 OpenSim 1.0• 80% SIMM functionality
• Simbody, CVODE
• Gait Workflow
• Documentation
• Examples and pre-made simulations
• Materials for a short course
August 2007 Dissemination Event• Tutorials adjunct to ASBAnnual Meeting
Some Questions…
• Do we need additional concepts in OpenSim?– sensors, contact, …
• How important is interfacing with Matlab?
• What SIMM features are priorities?
• What new things would be most compelling to you?– control, dynamic optimization, speed, …
• When should we engage users? Who?
• Are we being too ambitious?
• Are there some simple wins, killer apps?
• What should we be thinking about beyond the next year?– “Directed Reductionism” and Sherm’s Modeling Layer
Acknowledgements
Supported by the National Institutes of Health
through the
NIH Roadmap for Medical Research Grant U54 GM072970.
NIH HD45109, HD38962, HD33929
Why use OpenSim?
• Many of the capabilities of SIMM
• Choice of dynamics engines
– SD/Fast (proven, but costs and requires compile step)
– Simbody (free, no compile step, everything but loop joints)
• Choice of integrators
– RKF, CVODE, …
• Pipeline for creating simulations from MoCap
– CMC, …
• Analyses
• Extensible (plugins)
– New actuators, controllers, analyses, …
Clinical Importance
• Movement disorders are a challenging problem.
• The causes are not well understood.
• Muscles are the targets of treatments.
• Treatments are often unsuccessful.
Asakawa et al. (2004) J Bone Jnt Surg
Subject-Specific Simulation
78 kg, 1.78 m
19 DOF, 92 Muscles (Delp, 1990)
~1° Tracking Accuracy
~20 min computer time
3 dofhips
1 dofankles
3 dofback
1 dofknees
6 dofpelvis
1.18 m/s
Simulations Generated with CMC
Each generated with less than 10 minutes of CPU time.
Limitations of CMC
• CMC is a tracking algorithm, not well suited for predicting
emergent behavior.
Generating a simulation that replicates a subject’s gait cycle.
x Solving for the theoretically most-efficient gait cycle.
• CMC is dependent on the quality of the input data.– Kinematics
– Ground reaction forces
Computed Muscle Control
Step 1: Compute Desired Accelerations (PD Control)
)]()([)]()([)()(* expexpexp tqtqktqtqkTtqTtq pv
velocityerrors
positionerrors
x
Computed Muscle Control
Step 2: Solve for Muscle Excitations
a) Integrate forward by T (0.010) to compute and .
b) Solve static optimization problem to find to achieve .
c) Root solve to find the muscle excitations that will generate .
)(min Ttfmus
)(max Ttfmus
)(* Ttfmus
)(* Ttq
)(* Ttfmus
x
x
Computed Muscle Control
Step 3: Integrate from t to t+T
x
Computed Muscle Control
Repeat Steps 1, 2, and 3, until the final time is reached.
Step 3Step 2Step 1
x
Different Causes Suggest Different Treatments
Number of 3D, Muscle-Actuated Simulations of Gait
0
25
50
75
100
1990
1991
1992
1993
1994
1995
1996
1997
1998
1999
2000
2001
2002
2003
2004
2005
2006
Yamaguchi & Zajac(9 Muscles)
Anderson & Pandy(54 Muscles)
Liu, Jonkers, Arnold,Thelen, Anderson, Delp(92 Muscles)Number
Hase et al.,Sellers et at.
(~60 Muscles)
Perturbation analysis
2
( , ) ( , )( ) 2 m m i m i
m i mm
x F F t t x F t tx t F
t F
*Hold other active forces constant
0.020sect
1.0F N
Comparison of Joint Moments
All Subjects All Speeds
-6000
-4000
-2000
0
FAST SS SLOW XSLOW
-25
0
25
50
75
100
FAST SS SLOW XSLOW
GRAVITYVELOCITYMUSCLES
% o
f to
tal
Average Knee AccelerationExtension Phase
ext
d
eg/s
2
fle
x
Knee Extension in Early Swing for 6 Subjects at 4 Speeds