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Organic compounds containing oxygen Matej Kohutiar http://www.wellesley.edu/Chemistry/chem227/lipids/transport.htm

Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

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Page 1: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Organic compounds containing

oxygen

Matej Kohutiar

http://www.wellesley.edu/Chemistry/chem227/lipids/transport.htm

Page 2: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Organic compounds containing

oxygen

• Alcohols and phenols

• Carbonyl compounds

• Carboxylic acids and derivatives

• Ethers

Page 3: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Electron configuration of oxygen

1s2 2s2 2p4

In organic molecule oxygen is attached covalently

O

O

Page 4: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Electronic effects in molecules

Inductive effect

H3Cδ δ+ →CH2

δ+ → Cl δ-

Page 5: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Hydroxy derivatives

• Alcohols (Csp3-OH)

• Phenols (Car-OH)

• Ethers (R-O-R)

Page 6: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Alcohols

-Cδ+→O δ -←H‌δ+

Page 7: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Alcohols

• In 1o alcohol, only one carbon atom is attached to the

carbon carrying the -OH group (primary carbon)

• In 2o alcohol two carbon atoms are attached to the

carbon carrying the -OH group (secondary carbon)

• In 3o alcohol three other carbon atoms are attached to

the carbon atom carrying the -OH group (tertiary

carbon)

Page 8: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Alcohols

The number of hydroxyl groups, there are:

• Monohydroxyderivatives

• Polyhydroxy alcohols

Diols (dihydroxyderivatives,)

Triols (trihydroxyderivatives)

Tetrols (tetrahydroxyderivatives)

• Phenols -OH attached primary to aromatic ring

Page 9: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Acidity and alkalinity

CH3

OH

NaNH2CH3

O Na

CH3

OH

NaOH CH3

ONa

Page 10: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Acidity and alkalinity

OH2OH

-

CH3

OH

CH3

CH3

OH

CH3

CH3

OHCH3

CH3

O-

CH3

O-

CH3

CH3

O-

CH3 CH3

acidity

alkalinity

Page 11: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Nucleophilic substitution

CH3

OH

H+

CH3

OH2

+

CH3

Nu

Nu

Page 12: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Nucleophilic substitution

CH3

CH3

OH ClHCl

CH3

CH3

CH3

CH3

OH

CH3

CH3

BrPBr3

Page 13: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Elimination

CH3

OH

CH3H3PO4

OH

CH3

H2SO4

CH3

Page 14: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Oxidation of alcohols

CH3

CH2OH

CH3

CH O

CH3

C O

OH

KMnO4KMnO4

CH3

CH CH3

OH

CH3

C CH3

O

KMnO4

C OH

CH3

CH3 CH3

KMnO4

Page 15: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Biological effects of alcohols

• Drugs often contain OH group

• Increase of polarity and solubility in water

• Hypnotic activity decreases from tertiary to primary

alcohol

• Natural structures – steroids, hormones etc.

• Methanol

• Ethanol

• Glycerol

Page 16: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

PHENOLS

Page 17: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Phenols

OH O-

Page 18: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Reactions of phenols

OH OH

N+

O-

O

OH

N+

O-

O

N+

O-

O

HNO3

H2SO4

ONa

CO2

OH

C

O

OH

Page 19: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Reactions of phenols

OH

OHC

C

O

O

OH

OH

C

C

O

O

K2Cr2O7

K2Cr2O7

Page 20: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Biological effects of phenols

• Reactive group of acidic properties

• Phenol

• Resorcine

• Salicylic acid

• Acetylsalicylic acid

Page 21: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

CARBONYL COMPOUNDS

Page 22: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

O

CH3

muscone

CH3

CH3

CH3

O

citral

O

OH

O

CH3

vanil in

O

cinnamaldehyde

Page 23: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Reactivity

C O

R1

R1

+ -

Page 24: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Nucleophilic addition

O

R

R1

Nu-

O-

R

R1

NuH

+

OH

R

R1

Nu

Page 25: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Nucleophilic addition

5 4

OH OH

CH+

1OH

4

O1

CH3

OH

OH OH

O

H+

5

4

OH OH

CH+

1OH

1

4

O

5

OH

OH

Page 26: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Nucleophilic addition

CH3 C

CH3

ONH2-CH3

CH3

CCH3

NH

CH3

OH

CH3

C

CH3

NH

CH3

OH -H2OCH3 C

CH3

N

CH3

Page 27: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Aldol condensation

C

R2

R1

H

O

+

-

Page 28: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Aldol condensation

CH3 CH

O+ CH3

CH OCH3

CH

O

OH

Page 29: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Biological effects of carbonyl

containing molecules

• Very reactive group

• Formaldehyde

• Benzaldehyde

• Acetone

• Steroid hormones

Page 30: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

CH3

OCCH3

N

CH3

CH3

NH

CH3

O

O

NN

CH3

CH3NCH3

CH3

O

glutethimid

aminophenazone

methadone

Page 31: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

CARBOXYLIC ACIDS

Page 32: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Carboxylic acids

C3+

C3+

C

O H

R

O.

.

. .C

O

O H

R

+

-

+

-

Page 33: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Nucleophilic substitution

esterification

CH3 C

O

OH

C2H5OH+ CH3

C O

O

CH3

Page 34: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Carboxylic Acid Derivatives

Page 35: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Functional derivatives

CR

X

ONu

CR

Nu

O

CR

Cl

O

CR

OCOR

O

CR

OR

O

CR

O

NH2

CR

OH

O

Page 36: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Substitutional derivatives

CH3

C O

OH

Br

C O

OH

OH

CH3 C

C O

OH

O

C

O

NH2

OHCH3C

O

NH2

CH3OH

Page 37: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Examples of Polyfunctional Carboxylic Acids

HOOC-COOH – oxalic acid HOOC-CH2-COOH – malonic acid

HOOC-CH2-CH2-COOH – succinic acid (citric cycle) HCCO-CH2-CH2-CH2-COOH – glutaric acid

lactic acid

malic acid

citric acid

Dicarboxylic acids

-OH group containing acids

Maleic acid and fumaric acid are geometric isomers

pyruvic oxaloacetic acid

Unsaturated acids

a-ketoglutaric acid

Ketoacids

Page 38: Organic compounds containing oxygenkolweb.lf2.cuni.cz/Ustavy/biochemie/teaching/oxygen.pdf · Organic compounds containing oxygen •Alcohols and phenols •Carbonyl compounds •Carboxylic

Errata

By mistake I wrote wrong formula for resorcinol. Please, find right formula for this

structure below:

BR,

M.K.

OH

OH

OH

OH

resorcinolpyrocatechol