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See discussions, stats, and author profiles for this publication at: http://www.researchgate.net/publication/263036817 Selection of the best features for leukocytes classification in blood smear microscopic images ARTICLE in PROCEEDINGS OF SPIE - THE INTERNATIONAL SOCIETY FOR OPTICAL ENGINEERING · FEBRUARY 2014 Impact Factor: 0.2 · DOI: 10.1117/12.2043605 DOWNLOADS 149 VIEWS 114 4 AUTHORS, INCLUDING: Omid Sarrafzadeh Isfahan University of Medical Sciences 6 PUBLICATIONS 3 CITATIONS SEE PROFILE Hossein Rabbani Isfahan University of Medical Sciences 104 PUBLICATIONS 309 CITATIONS SEE PROFILE Ardeshir Talebi Isfahan University of Medical Sciences 69 PUBLICATIONS 361 CITATIONS SEE PROFILE Available from: Hossein Rabbani Retrieved on: 22 July 2015

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  • Seediscussions,stats,andauthorprofilesforthispublicationat:http://www.researchgate.net/publication/263036817

    SelectionofthebestfeaturesforleukocytesclassificationinbloodsmearmicroscopicimagesARTICLEinPROCEEDINGSOFSPIE-THEINTERNATIONALSOCIETYFOROPTICALENGINEERINGFEBRUARY2014ImpactFactor:0.2DOI:10.1117/12.2043605

    DOWNLOADS149

    VIEWS114

    4AUTHORS,INCLUDING:

    OmidSarrafzadehIsfahanUniversityofMedicalSciences6PUBLICATIONS3CITATIONS

    SEEPROFILE

    HosseinRabbaniIsfahanUniversityofMedicalSciences104PUBLICATIONS309CITATIONS

    SEEPROFILE

    ArdeshirTalebiIsfahanUniversityofMedicalSciences69PUBLICATIONS361CITATIONS

    SEEPROFILE

    Availablefrom:HosseinRabbaniRetrievedon:22July2015

  • SELECTION THE BEST FEATURES FOR LEUKOCYTES

    CLASSIFICATION IN BLOOD SMEAR MICROSCOPIC IMAGES

    Omid Sarrafzadeh*a, Hossein Rabbani

    a, Ardeshir Talebi

    b, Hossein Yousefi-Banaem

    a

    aDept. of Biomedical Engineering, Faculty of Advanced Medical Technology, Isfahan University of

    Medical Sciences, Isfahan, Iran; bDept. of Pathology, School of Medicine, Isfahan University of

    Medical Sciences, Isfahan, Iran

    ABSTRACT

    Automatic differential counting of leukocytes provides invaluable information to pathologist for diagnosis and treatment

    of many diseases. The main objective of this paper is to detect leukocytes from a blood smear microscopic image and

    classify them into their types: Neutrophil, Eosinophil, Basophil, Lymphocyte and Monocyte using features that

    pathologists consider to differentiate leukocytes. Features contain color, geometric and texture features. Colors of

    nucleus and cytoplasm vary among the leukocytes. Lymphocytes have single, large, round or oval and Monocytes have

    singular convoluted shape nucleus. Nucleus of Eosinophils is divided into 2 segments and nucleus of Neutrophils into 2

    to 5 segments. Lymphocytes often have no granules, Monocytes have tiny granules, Neutrophils have fine granules and

    Eosinophils have large granules in cytoplasm. Six color features is extracted from both nucleus and cytoplasm, 6

    geometric features only from nucleus and 6 statistical features and 7 moment invariants features only from cytoplasm of

    leukocytes. These features are fed to support vector machine (SVM) classifiers with one to one architecture. The results

    obtained by applying the proposed method on blood smear microscopic image of 10 patients including 149 white blood

    cells (WBCs) indicate that correct rate for all classifiers are above 93% which is in a higher level in comparison with

    previous literatures.

    Keywords: Blood smear microscopic image, feature extraction, fuzzy C-means clustering, leukocytes (WBCs)

    segmentation and counting, SVM classifier.

    1. INTRODUCTION

    Blood consists of three types of cells and cell fragments floating in a liquid called plasma. These cellular components

    are: Red Blood Cells ("erythrocytes", "RBCs"), White Blood Cells ("leukocytes", "WBCs") and Platelets. WBCs play a

    significant role in the diagnosis of different diseases such as leukemia and different types of infections [1], so extracting

    information from them is valuable for hematologists. WBCs composition also reveals important diagnostic information

    about patients. Substituting automatically detecting and counting of WBCs for manually locating and counting different

    classes of WBCs is an important topic in the domain of cancer diagnosis [2]. Microscopic differential WBC count is still

    performed by hematologists, being indispensable in diagnostics with malignance suspicious. This as a reference method

    is slow and subjective and its reproducibility is poor, however its value for blood samples containing abnormal cells

    remains indisputable. Therefore, automation of this task is very helpful for improving the hematological procedure and

    accelerating diagnosis of many diseases [3]. WBCs contain nucleus and cytoplasm and there are five types of leukocytes

    (WBCs) found in the blood: Neutrophils, Basophils, Eosinophils, Lymphocytes, and Monocytes. Each cell type has a

    specific role to play in our body's immune system [4]. The texture, color, size and morphology of nucleus and cytoplasm

    make differences among WBCs. The segmentation step is very crucial because the accuracy of the subsequent feature

    extraction and classification depends on the correct segmentation of WBCs. It is also a difficult and challenging problem

    due to the complex nature of the cells and uncertainty in the microscopic images. Therefore, this step is the most

    important challenge in many works in the literatures and improvement of cell segmentation has been the most common

    effort in many researches. Many blood smear image segmentation methods have been proposed in the area of general

    segmentation of WBCs which are generally based on edge and border detection, region growing, filtering, mathematical

    morphology, and watershed clustering [5-14]. Despite many beneficial explorations have been carried out in WBCs

    segmentations, majority of them have some defects such as complexity of arithmetic, difficulty to ensure parameters and

  • so on. In this paper, the boundary of WBCs in the images is manually determined to decrease the effects of segmentation

    errors, but the nucleus and cytoplasm of leukocytes are separated automatically by a fuzzy C-means clustering method.

    Also, several researchers have previously proposed features to differentiate leukocytes [15-20]. Although many useful

    researches have been done for classification of WBCs, many of them have some defects. Some methods extracted

    features only from nucleus which lead to have less correct rate. In some works features are extracted from gray-level

    images which do not use rich information that color images have. In some researches features are extracted from the

    entire cell (not specific features from nucleus or cytoplasm) which usually causes more error in classification. Many

    methods used singly geometric features or texture features. In this paper, first nucleus and cytoplasm are segmented

    using fuzzy C-means (FCM) clustering and morphological operations in blood smear microscopic images. Then, proper

    features are extracted from nucleus, cytoplasm and the entire cell. Finally, leukocytes are classified using proper features

    by SVM classifiers. The outline of the article is as follows. Section two deals with methodology and presents the

    proposed algorithm. Results and discussion are presented in section three.

    2. METHODOLOGY

    First, we briefly introduce different types of WBCs and how to differentiate them in a blood smear microscopic image.

    There are five different types of Leukocytes (WBCs). Leukocytes could generally be divided into two groups: 1)

    Granulocytes which contain granules (inclusions in their cytoplasm) and usually have lobulated or segmented nucleus.

    Neutrophils, Basophils and Eosinophils are in this group; 2) Agranulocytes (Mononuclear) which do not contain granules

    and do not have lobulated or segmented nucleus (Mononuclear refers to having one nucleus). Monocytes and

    Lymphocytes are in this group. Neutrophils account for the highest amount of WBCs (about 60%). Neutrophils nucleus is divided into 2 to 5 segments and stains dark purple (multi-lobed nucleus). Cytoplasm is pale pink to tan with fine pink-

    purple granules and have 12-16 micrometers in diameter. Eosinophils account for about 3% of WBCs in the blood.

    Eosinophils nucleus is blue and divided into 2 segments. Cytoplasm is full of pale pink to tan with large orange and red granules and have 14-16 micrometers in diameter. Basophils have lowest number of WBCs in blood (about 1%).

    Basophils nucleus has 2 lobes that stains purple and is difficult to see and their cytoplasm is pale pink tan but contains large purple/blue-black granules obscure nucleus and have 14-16 micrometers in diameter. Monocytes comprise about

    6% of WBCs in the blood. Monocytes have singular nucleus (convoluted shape); kidney shaped, bean shaped, or

    horseshoe shaped with a deep indentation and stains a blue-gray color with ground glass cytoplasm with tiny granules and Vacuoles (cavity filled with fluid in the cytoplasm) are sometimes presented. Monocytes are the largest normal

    blood cells and have 14-20 micrometers in diameter. Lymphocytes are second most common WBCs in blood (about

    (a) (b) (c (d) (e)

    Figure 1. Types of Leukocytes (WBCs) (a) Neutrophil, (b) Eosinophil, (c) Basophil, (d) Monocyte and (e) Lymphocyte.

    TABLE 1. Leukocytes (WBCs) specification

    WBCs ~% in

    blood Nucleus Cytoplasm

    Size

    (m)

    Neutrophils 60% Divided into 2 to 5 segments and stains dark

    purple (multi-lobed nucleus). Pale pink to tan with fine pink-purple granules. 12-16

    Eosinophils 3% Blue and is divided into 2 segments. Full of pale pink to tan with large orange and

    red granules. 14-16

    Basophils 1% Have 2 lobes that stains purple and is

    difficult to see.

    Pale pinktan but contains large purple/blue-black granules obscure nucleus.

    14-16

    Monocytes 6%

    Have singular nucleus (convoluted shape);

    kidney shaped, bean shaped, or horseshoe

    shaped with a deep indentation.

    Stains a blue-gray color with ground glass cytoplasm with tiny granules, Vacuoles are

    sometimes present.

    14-20

    Lymphocytes 30% Have large, round or oval, dark staining

    nucleus.

    Little to no cytoplasm with pale blue in color.

    Occasional purple-reddish granules. 8-15

  • 30%). Lymphocytes have large, round or oval, dark staining nucleus and little to no cytoplasm with pale blue in color.

    Lymphocytes occasionally have purple-reddish granules and have 8-15 micrometers in diameter. Table 1 contains brief

    specification of WBCs and figure 1 shows different types of leukocytes. Blood smear of 10 patients have been used in

    this work. Digital microscopic images of WBCs are captured with Canon V1 camera mounted on Canon optical

    microscope. The data are stored in jpg format with 38722592 pixels and 300 dpi resolution. The images are in sRGB

    color space. Border of WBCs is manually determined to overcome the error of segmentation, but nucleus and cytoplasm

    are separated using fuzzy C-means and morphological operations which is presented in the following.

    2.1 Nucleus segmentation

    The algorithm for nucleus segmentation is briefly illustrated in figure 2. The input microscopic image stores in three

    Red, Green and Blue (RGB) channels. The median filter is applied on each R, G and B band separately to reduce noise

    and also not to lose edges. Since the red, green and blue components are highly correlated, it is difficult to execute some

    image processing algorithms. So, the image is converted from RGB color space to L*a*b* color space. The L*a*b*

    color space (also known as CIE L*a*b* or CIELAB) is colorimetric, perceptually uniform and device independent. The

    L*a*b* color space is an excellent decoupler of intensity (represented by lightness L*) and color (represented by a* for

    red minus green and b* for green minus blue) [21]. The sRGB and L*a*b* images of WBCs with their subspaces are

    shown in figure 3. The colors in a* and b* subspaces are classified using fuzzy C-means clustering to cluster the cells

    into two clusters. Since the nucleus is darker than cytoplasm, the cluster with minimum mean of 3 R, G and B colors is

    consider as nucleus cluster and the other one as cytoplasm cluster. Some morphological operations are performed on the

    nucleus cluster to eliminate probable false segments. First, the morphological open operation (erosion followed by

    dilation) is done to smoothes the contour of nuclei, breaks narrow isthmuses and eliminate thin protrusions. For opening

    operation, a flat disk-shaped structuring element with radius 2

    is used. After opening, the morphological hole filling

    operation is applied to fill inside the segmented regions.

    Finally, the nucleus segmented part subtract from the entire

    cell to obtain cytoplasm part. Figure 4 shows the result of

    applying the algorithm on some images in our data base.

    2.2 Feature extraction

    Features that are extracted categorize in color features,

    geometrical features and texture features which are introduced

    each one in the following. It should be mentioned that we had

    few basophils in our data set and then we disregard classifying

    basophils.

    2.2.1 Color features

    As can be seen in table 1, types of WBCs have less color

    difference in nucleus but more in cytoplasm, so a measure of

    color from both nucleus and cytoplasm could be valuable.

    RGB color space is not proper for extracting color features

    because the red, green and blue components are highly

    correlated and also is not well suited for describing colors in

    terms that are practical for human interpretation. HIS (Hue,

    Saturation, Intensity) color space corresponds closely with the

    way human describe and interpret color. The HIS model also

    has the advantage that it decouples the color and gray-scale

    information in an image [21]. From table 1 it is clear that color

    of nucleus in WBCs doesnt vary so much and usually contain single chromatic colors, but color of cytoplasm in WBCs vary

    especially in agranulocytes due to the existence of granules. So

    the median of hue and saturation of both nucleus and

    cytoplasm and standard derivation of hue and saturation of just

    cytoplasm are considered as color features. So, 6 color features

    are considered.

    Input sRGB Image

    Apply median filter to R,G,B bands

    Convert to L*a*b* color space

    Select a* & b* components as features

    Apply Fuzzy C-means

    clustering

    Apply morphological

    operations on nucleus cluster

    Subtract nucleus and extract

    cytoplasm

    Retrieve the nucleus and

    cytoplasm segments from

    original RGB image

    Figure 2. Steps to segment nucleuses

  • 2.2.2 Geometric features

    From specification of leukocytes in table 1, there are noticeable differences for nucleus geometry of leukocytes, so

    geometric features should be extracted from nucleus not cytoplasm and are considered as follow. The number of

    segments of nucleus, compactness, eccentricity and solidity of nucleus which are defined as follow (for nucleus with

    more than one segment, these features are calculated for the biggest segment). The normalized shape compactness

    measure to be unity for a circle is given by (1):

    2

    4

    PC

    A (1)

    where C is the value of shape compactness, A is the shape area and P is the shape perimeter [22]. Eccentricity is used as a

    scalar that specifies the eccentricity of the ellipse that has the same second-moments as the region. In this definition,

    eccentricity is the ratio of the distance between the foci of the ellipse and its major axis length. Solidity is a scalar

    Figure 3. From top to bottom: Neutrophil, Eosinophil, Lymphocyte and Monocyte. From left to

    right: sRGB, Red band, Green band, Blue band, L*a*b*, L* band, a* band and b* band.

    Figure 4. From top to bottom: Neutrophil, Eosinophil, Lymphocyte and Monocyte. From left to

    right one after the other: WBC and segmentation of nucleus and cytoplasm.

  • specifying the proportion of the pixels in the convex hull that are also in the region and is computed by equation (2).

    A

    SCA

    (2)

    where S is the value of solidity, A is the shape area and CA (Convex Area) is the area of convex image. As we see from

    table 1, the size of WBCs is a crucial parameter, so area of cell and nucleus to cytoplasm area ratio are considered as

    further geometric features. Thus 6 geometric features are extracted just from nucleus (except for area of cell and nucleus

    to cytoplasm area ratio which used information of both nucleus and cytoplasm). It should be mentioned that the main

    geometric features (the number of segments of nucleus, compactness, eccentricity and solidity) are extract just from

    nucleus.

    2.2.3 Texture features

    From table 1 we see that cytoplasms texture varies among the cytoplasm of WBCs, so texture features are extracted only from cytoplasm of leukocytes as follows. Statistical measures of texture such as mean (a measure of average intensity),

    standard derivation (a measure of average contrast), smoothness, third moment (the skewness of a histogram), uniformity

    and entropy (measure of randomness) [21] are computed. Therefore 6 statistical features are extracted. The expressions

    for the nth moment about the mean and other statistical measures are defined in equations (3) through (8):

    1

    0

    Ln

    n i i

    i

    z m p z

    (3)

    Standard derivation : 2 z (4)

    Smoothness : 21 1 1R (5)

    Skewness : 1

    3

    3

    0

    L

    i i

    i

    z m p z

    (6)

    Uniformity : 1

    2

    0

    L

    i

    i

    U p z

    (7)

    Entropy : 1

    2

    0

    logL

    i i

    i

    e p z p z

    (8)

    Also the moment invariants are computed as follow: The 2D moment of order (p+q) of a digital image f(x,y) is defined

    by equation (9).

    ,p qpqx y

    m x y f x y for p,q = 0,1,2, (9)

    where the summations are over the values of the spatial coordinates x and y spanning the image. The corresponding

    central moment is defined by equation (10).

    , ,p q

    p q

    x y

    x x y y f x y (10)

    where 10 01

    00 00

    m mx and y

    m m

    The normalized central moment of order (p+q) is defined in equation (11).

  • 00

    pq

    pq

    for p,q = 0,1,2, (11)

    where 12

    p q

    for p+q = 2,3, .

    A set of 2-D moment invariants that are insensitive to translation, scale change, mirroring, and rotation can be derived

    from the equations (12) through (18):

    1 20 02 (12)

    2 2

    2 20 02 114 (13)

    2 2

    3 30 12 21 033 3 (14)

    2 2

    4 30 12 21 03 (15)

    2 2

    5 30 12 30 12 30 12 21 03

    2 2

    21 03 21 03 30 12 21 03

    3 3

    3 3

    (16)

    2 2

    6 20 02 30 12 21 03 11 30 12 21 034 (17)

    2 2

    7 21 03 30 12 30 12 21 03

    2 2

    12 30 21 03 30 12 21 03

    3 3

    3 3

    (18)

    So 7 moment invariants 1 7[ ,..., ] features are extracted. Finally, 25 features are used in order to classify

    leukocytes into four groups: Neutrophil, Eosinophil,

    Lymphocyte and Monocyte.

    2.3 Classification

    The main task of the classification part is to classify the

    WBCs into the category they belong to. Four categories of

    WBCs were selected for recognition in this work (see

    figure 5). Four Support Vector Machine (SVM)-based

    classifiers with one to one architecture are used for

    classification as shown in figure 6. In this architecture, new

    type of WBCs (Basophil) needs to be trained individually

    without any effect on prior classifiers. SVM classifiers are

    independent, which means each one is trained individually

    and there are only two possible outputs for each classifier.

    For example, SVM1 is learned to detect Neutrophil and

    reject other WBCs. All data are fed to each SVM

    separately. For cross-validation of each classifier,

    randomly half of the data is used for training and the

    remaining is kept for testing. A linear kernel function is

    used to map the training data into kernel space and a

    Sequential Minimal Optimization (SMO) method is used to

    Figure 5. Selected categories for WBCs

    Figure 6. Classification based on one to one architecture.

    Eosinophil

    SVM4

    SVM3

    SVM2

    SVM1

    All

    dat

    a

    Neutrophil

    Lymphocyte

    Monocyte

  • find the separating hyperplane. Correct-rate, sensitivity and specificity are used to evaluate performance of classifiers.

    3. RESULTS AND DISCUSSION

    The total numbers of images which are used in this research are mentioned in Table 2. Twenty five features are extracted

    from each WBC in order to classify cells into four groups. Each classifier is trained for 100 times and in each training

    procedure, randomly half of the data is considered as training set and the classifier is evaluated by residual half of the

    data as testing set. The results of evaluation are presented by three parameters. Correct rate (Correctly Classified

    Samples / Classified Samples), Sensitivity (Correctly Classified Positive Samples / True Positive Samples) and

    Specificity (Correctly Classified Negative Samples / True Negative Samples) for each classifier are shown in table 2.

    Our work is compared with two recent similar works. Features introduced in [20] are considered and we name them

    Veluchamy features. Veluchamy features are 27: Geometrical features (Area, Perimeter, Circularity, Form-factor, K (No

    of pixels)); First order statistical features (Mean, Dispersion, Variance, Average Energy, Skewness, Kurtosis, Median,

    Mode); Second order statistical features (Energy, Inertia, Entropy, Homogeneity, Max probability, Inverse difference,

    Correlation) and algebraic moment invariants ( 1 7[ ,..., ] ). Our algorithm has been implemented with no changes

    except for feautures. We have extracted Veluchamy features from the entire cell as Veluchamy et al did. The results of

    classification for Veluchamy features are shown in table 3. Other features introduced in [13] are considered for

    comparison and is named Mohapatra features. Mohapatra features are: Fractal dimension; Contour signature; Shape

    features (Area, Compactness, Solidity, Eccentricity, Elongation, Form-factor); Color features (the mean color values in

    RGB and HSV color spaces); Texture features (Homogeneity, Energy, Correlation, Entropy). We have extracted

    Mohapatra features from the nucleus as Mohapatra et al did. The results of classification for Mohapatra features are

    shown in table 4. By comparing table 2 through 4, it is seen that proposed features yield better performance than two

    recent works. In this paper we introduced appropriate features based on those features that pathologists consider to

    differentiate leukocytes. These appropriate features are: 6 color features from both nucleus and cytoplasm (the median of

    hue and saturation of both nucleus and cytoplasm and standard derivation of hue and saturation of cytoplasm); 6

    geometric features (the number of segments of nucleus, compactness, eccentricity and solidity) from only nucleus

    (except nucleus to cytoplasm area ratio and area of the entire cell); 6 statistical features (average intensity, average

    contrast, smoothness, skewness, uniformity and entropy) from only cytoplasm; 7 moment invariants features from only

    cytoplasm of each WBC. It should be mentioned that in this paper, the features are wisely extracted from both nucleus

    and cytoplasm, not only from nucleus or cytoplasm. As segmentation is a crucial step in automatic leukocytes detection

    systems, accurate segmentation of both nucleus and cytoplasm is needed for using our proposed features. With this point

    of view, our results show that proper features as pathologists consider could give better performance and it is seen from

    table 2 that correct rate for all leukocytes are above 93% which is a high and acceptable rate.

    WBCs No. of

    cells

    Correct

    rate Sensitivity Specificity

    Neutrophils 38 % 98.5 % 98.6 % 98.2

    Eosinophils 42 % 99.9 % 99.9 % 99.9

    Monocytes 36 % 93.7 % 94.6 % 90.9

    Lymphocytes 33 % 98.8 % 99.9 % 94.8

    Total 149 % 97.73 % 98.25 % 95.95

    TABLE 2. Results of classification for the proposed features

    WBCs No. of

    cells

    Correct

    rate Sensitivity Specificity

    Neutrophils 38 % 97.2 % 97.9 % 95.1

    Eosinophils 42 % 97.8 % 85.4 % 94.1

    Monocytes 36 % 87.3 % 86.6 % 89.4

    Lymphocytes 33 % 93.8 % 96.2 % 85.3

    Total 149 % 94.03 % 91.53 % 90.98

    TABLE 3. Results of classification for Veluchamy features

    WBCs No. of

    cells

    Correct

    rate Sensitivity Specificity

    Neutrophils 38 % 90.9 % 91.7 % 88.7

    Eosinophils 42 % 82.5 % 79.2 % 90.9

    Monocytes 36 % 86.2 % 85.9 % 87.1

    Lymphocytes 33 % 93.9 % 95.3 % 89.2

    Total 149 % 88.38 % 88.03 % 88.98

    TABLE 4. Results of classification for Mohapatra features

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