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Frederic S Resnic MD MScHenry Ssemaganda MD MScSusan Robbins BSComparative Effectiveness Research InstituteLahey Clinic Medical Center
Prospective Active Surveillance The DELTA System
User Training Session
October 22 2018
1
2
bull Introduction to Automated Surveillance (Prospective Active Surveillance)
bull Overview of DELTA System
bull CathPCI Pilot Example
(Break)
bull DELTA User Support
bull DELTA Demo Interactive Session
Agenda
3
Introduction to DELTA
Automated Safety Surveillance
Frederic S Resnic MD MSc
Challenges of Existing Post-Market Medical Device Surveillance Approaches
1 Adverse event reporting unable to
estimate event rates (lsquodenominatorrsquo
issue) non-representative
(reporting behavior) resource
intensive
2 Post-Approval Studies generally
underpowered without
contemporary comparator groups
for low frequency safety events
3 Current approaches lack systematic
evaluation of real-world
performance information to provide
timely information to providers
manufacturers and regulators
Complementary role forProspective Near Real-Time Active Safety Surveillance
bull The term ldquoActive Surveillancerdquo implies differing monitoring strategies to different stakeholders
bull CDRH Non-research efforts that are part of routine post-market vigilance programs for specific (typically high-risk) medical devices
bull Industry Exploratory non-research post-market device performance monitoring
bull Academic Prospective pre-specified risk-adjusted time-limited analysis of RWE
bull Key attributes of medical device Active Surveillance
bull Timely Primary goal is to assess device performance in time frame that permits appropriate action (by manufacturer clinicians and regulators)
bull Repeated Assessments Minimize delay in identifying safety signal or absence of signal
bull Methodologically Appropriate Appropriate risk adjustment comparators and signal thresholds Minimize Type II error (false alarms) without missing opportunities to detect real issues
Defining Active Surveillance
bull Automated Surveillance extends Active Surveillance by leveraging software tools to support the pre-specified repeated evaluations of an accruing dataset
bull Automated Surveillance enables
bull Near real-time prospective evaluation of accruing experience
bull Simultaneous monitoring of multiple devices and outcomes
bull Application of robust data security protocols for remote data monitoring
Defining ldquoAutomatedrdquo Surveillance
Retrospective Single Study
Device Performance
Evaluation
Real Time Routine
Continuous Device
Performance MonitoringRetrospective
SequentialStudy
Accruing Data Sequential
Study
Accruing Data Near Real-Time
Sequential Study
Accruing Data Near Real-Time
Sequential Programmed
Active
Surveillance
Automated
Surveillance
Inexorable progression toward real-time high quality RWE availability as EHR RegistryCRN
and Informatics technologies mature
JAMIA 2006
JAMA 2010Circ Card Qual 2012
7
Device Active Surveillance 10 Years of Learning Lessons
NEJM 2017
CathPCI DELTA Study Background
bull Vascular Closure Devices (VCD) approved for use following cardiac catheterization procedures
bull VCD use variety of mechanicalpharmacologic designs and delivery mechanisms to secure device and accelerate clotting
bull PMA studies generally small and limited high quality post-market safety data regarding VCD
bull Mynx VCD suspected of having higher failure rates than alternative VCD
bull Observations from 5-hospital prospective safety surveillance (Kumar et al - Circ Card Qual Outcomes 2014)
bull Post-publication analysis of national registry study (Tavris
et al - J Invasive Card 2012)
CathPCI DELTA Study Background
CathPCI DELTA Study Hypothesis
1 Active prospective surveillance of national cardiovascular registry will demonstrate
Mynx VCD is associated with increased rates of post-procedure vascular complications andor bleeding compared with propensity matched patients receiving alternative VCD
2 Additionally Mynx safety signal will be heightened in high risk patient subgroups women agegt70yrs and diabetic patients
CathPCI DELTA Study Methods Overview
bull Prospective observational study using Propensity Matching (11) to compare similar populations of patients receiving Mynx following PCI to patients receiving other ldquoactiverdquo VCD
bull Primary endpoint Any vascular complication ndash composite of access site hematoma requiring treatment access site bleeding requiring intervention or RPH
bull Pre-specified protocol and statistical plan including adjustment for multiple comparisons and planned interim data reviews [Avoid ldquoData miningrdquo]
bull Pre-specified high risk patient subsets (DM female agege70yr) sensitivity analyses and ldquofalsification hypothesisrdquo analysis
bull Study oversight committee recommended post-hoc analyses including new falsification hypothesis and signal verification study
13
CathPCI DELTA Study Patient Flow Diagram
Source Resnic FS Majithia A et al NEJM Jan 2017
Methods Review What is Propensity Matching
ALL PCI Patients Receiving Mynx ALL PCI Patients Receiving Other VCD
Matched Mynx PatientsUnmatched
Mynx Patients Matched Non-Mynx Patients
PS
=
15
CathPCI DELTA Study Primary AnalysisMynx VCD was associated with a 59 increased risk of vascular complications
as compared with alternative VCD Signal apparent within 9 months
Source Resnic FS Majithia A et al NEJM Jan 2017
Pre-specified subgroup analysis was performed for high risk subgroups including women the agegt70 and patients with diabetes
Female Patients Age gt 70yr
Diabetic Patients
CathPCI DELTA Study Results High Risk Populations
Source Resnic FS Majithia A et al NEJM 2017
17
CathPCI DELTA Falsification Hypothesis
Source Resnic FS et al NEJM Jan 2017 (Supplementary Appendix)
bull Multiple options each with inherent limitations
bull Risk-adjusted performance compared with OPC ndashquestions of validity of OPC
bull Risk-adjusted performance compared with historical performance of alternative therapeutic option - issues around learning impacts and secular treatment trends
bull Direct device-device (or product group) comparisons (propensity matched or adjusted) ndash significant stakeholder sensitivity
bull Guiding Principle Select comparator to maximize validity within limitations of stakeholder sensitivitytolerance
Methodologic Challenge Selecting ComparatorsV
ali
dit
y
Se
ns
itiv
ity
Methodologic Challenge Selecting Methods
bull Multiple options for analyzing serial outcomes data using surveillance framework
bull Propensity matched analysis ndash robust addresses confounding most interpretable Weaknesses truly novel technology multiple comparisons treatment selection biases sample loss
bull Propensity adjusted analysis ndash robust addresses confounding maximizes sample Weaknesses interpretability multiple comparisons
bull Sequential Testing (CSUM SPRT etc) ndash indefinite surveillance address multiple comparison generalizable Weaknesses interpretability risk adjustment
bull Guiding Principle Maximize interpretability while minimizing risk of confounding
Ge
ne
rali
za
bilit
y
Inte
rpre
tab
ilit
y
bull Selecting appropriate thresholds for triggering additional explorationaction is critical Must be part of written protocol endorsed by all prior to start of data analysis
bull Recommended Select clinically meaningful difference in performance
bull Can differ based on outcome studied Small differences in mortality with larger differences tolerated with less serious outcomes
bull Select alpha (false-positive rate) based on seriousness of outcome Acceptable to be different from 005
bull Example ICD Lead failure absolute difference ge 10 than comparator lead at 1-year α=005 Death alerts at ge 5 absolute difference α=010
Methodologic Challenge Alert Thresholds
Advantages of DELTA Surveillance
1 Automated Continuous Prospective Active Surveillance suitable for monitoring of large clinical datasets using straightforward analytic methods
2 Supports multiple simultaneous active surveillance analyses
3 Pre-specified analytic plan DELTA configured at outset of analysis to perform studies in accordance with SAPprotocol
4 Propensity matching is uniquely suited to comparative safety analyses Statistically robust very easy to interpret and explain and is conducive to post-hoc analysis for signal exploration
5 Pragmatic and Scalable Approach Validated in central data model and distributed models
25
Overview of DELTA
Frederic S Resnic MD MSc
and Susan Robbins
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
2
bull Introduction to Automated Surveillance (Prospective Active Surveillance)
bull Overview of DELTA System
bull CathPCI Pilot Example
(Break)
bull DELTA User Support
bull DELTA Demo Interactive Session
Agenda
3
Introduction to DELTA
Automated Safety Surveillance
Frederic S Resnic MD MSc
Challenges of Existing Post-Market Medical Device Surveillance Approaches
1 Adverse event reporting unable to
estimate event rates (lsquodenominatorrsquo
issue) non-representative
(reporting behavior) resource
intensive
2 Post-Approval Studies generally
underpowered without
contemporary comparator groups
for low frequency safety events
3 Current approaches lack systematic
evaluation of real-world
performance information to provide
timely information to providers
manufacturers and regulators
Complementary role forProspective Near Real-Time Active Safety Surveillance
bull The term ldquoActive Surveillancerdquo implies differing monitoring strategies to different stakeholders
bull CDRH Non-research efforts that are part of routine post-market vigilance programs for specific (typically high-risk) medical devices
bull Industry Exploratory non-research post-market device performance monitoring
bull Academic Prospective pre-specified risk-adjusted time-limited analysis of RWE
bull Key attributes of medical device Active Surveillance
bull Timely Primary goal is to assess device performance in time frame that permits appropriate action (by manufacturer clinicians and regulators)
bull Repeated Assessments Minimize delay in identifying safety signal or absence of signal
bull Methodologically Appropriate Appropriate risk adjustment comparators and signal thresholds Minimize Type II error (false alarms) without missing opportunities to detect real issues
Defining Active Surveillance
bull Automated Surveillance extends Active Surveillance by leveraging software tools to support the pre-specified repeated evaluations of an accruing dataset
bull Automated Surveillance enables
bull Near real-time prospective evaluation of accruing experience
bull Simultaneous monitoring of multiple devices and outcomes
bull Application of robust data security protocols for remote data monitoring
Defining ldquoAutomatedrdquo Surveillance
Retrospective Single Study
Device Performance
Evaluation
Real Time Routine
Continuous Device
Performance MonitoringRetrospective
SequentialStudy
Accruing Data Sequential
Study
Accruing Data Near Real-Time
Sequential Study
Accruing Data Near Real-Time
Sequential Programmed
Active
Surveillance
Automated
Surveillance
Inexorable progression toward real-time high quality RWE availability as EHR RegistryCRN
and Informatics technologies mature
JAMIA 2006
JAMA 2010Circ Card Qual 2012
7
Device Active Surveillance 10 Years of Learning Lessons
NEJM 2017
CathPCI DELTA Study Background
bull Vascular Closure Devices (VCD) approved for use following cardiac catheterization procedures
bull VCD use variety of mechanicalpharmacologic designs and delivery mechanisms to secure device and accelerate clotting
bull PMA studies generally small and limited high quality post-market safety data regarding VCD
bull Mynx VCD suspected of having higher failure rates than alternative VCD
bull Observations from 5-hospital prospective safety surveillance (Kumar et al - Circ Card Qual Outcomes 2014)
bull Post-publication analysis of national registry study (Tavris
et al - J Invasive Card 2012)
CathPCI DELTA Study Background
CathPCI DELTA Study Hypothesis
1 Active prospective surveillance of national cardiovascular registry will demonstrate
Mynx VCD is associated with increased rates of post-procedure vascular complications andor bleeding compared with propensity matched patients receiving alternative VCD
2 Additionally Mynx safety signal will be heightened in high risk patient subgroups women agegt70yrs and diabetic patients
CathPCI DELTA Study Methods Overview
bull Prospective observational study using Propensity Matching (11) to compare similar populations of patients receiving Mynx following PCI to patients receiving other ldquoactiverdquo VCD
bull Primary endpoint Any vascular complication ndash composite of access site hematoma requiring treatment access site bleeding requiring intervention or RPH
bull Pre-specified protocol and statistical plan including adjustment for multiple comparisons and planned interim data reviews [Avoid ldquoData miningrdquo]
bull Pre-specified high risk patient subsets (DM female agege70yr) sensitivity analyses and ldquofalsification hypothesisrdquo analysis
bull Study oversight committee recommended post-hoc analyses including new falsification hypothesis and signal verification study
13
CathPCI DELTA Study Patient Flow Diagram
Source Resnic FS Majithia A et al NEJM Jan 2017
Methods Review What is Propensity Matching
ALL PCI Patients Receiving Mynx ALL PCI Patients Receiving Other VCD
Matched Mynx PatientsUnmatched
Mynx Patients Matched Non-Mynx Patients
PS
=
15
CathPCI DELTA Study Primary AnalysisMynx VCD was associated with a 59 increased risk of vascular complications
as compared with alternative VCD Signal apparent within 9 months
Source Resnic FS Majithia A et al NEJM Jan 2017
Pre-specified subgroup analysis was performed for high risk subgroups including women the agegt70 and patients with diabetes
Female Patients Age gt 70yr
Diabetic Patients
CathPCI DELTA Study Results High Risk Populations
Source Resnic FS Majithia A et al NEJM 2017
17
CathPCI DELTA Falsification Hypothesis
Source Resnic FS et al NEJM Jan 2017 (Supplementary Appendix)
bull Multiple options each with inherent limitations
bull Risk-adjusted performance compared with OPC ndashquestions of validity of OPC
bull Risk-adjusted performance compared with historical performance of alternative therapeutic option - issues around learning impacts and secular treatment trends
bull Direct device-device (or product group) comparisons (propensity matched or adjusted) ndash significant stakeholder sensitivity
bull Guiding Principle Select comparator to maximize validity within limitations of stakeholder sensitivitytolerance
Methodologic Challenge Selecting ComparatorsV
ali
dit
y
Se
ns
itiv
ity
Methodologic Challenge Selecting Methods
bull Multiple options for analyzing serial outcomes data using surveillance framework
bull Propensity matched analysis ndash robust addresses confounding most interpretable Weaknesses truly novel technology multiple comparisons treatment selection biases sample loss
bull Propensity adjusted analysis ndash robust addresses confounding maximizes sample Weaknesses interpretability multiple comparisons
bull Sequential Testing (CSUM SPRT etc) ndash indefinite surveillance address multiple comparison generalizable Weaknesses interpretability risk adjustment
bull Guiding Principle Maximize interpretability while minimizing risk of confounding
Ge
ne
rali
za
bilit
y
Inte
rpre
tab
ilit
y
bull Selecting appropriate thresholds for triggering additional explorationaction is critical Must be part of written protocol endorsed by all prior to start of data analysis
bull Recommended Select clinically meaningful difference in performance
bull Can differ based on outcome studied Small differences in mortality with larger differences tolerated with less serious outcomes
bull Select alpha (false-positive rate) based on seriousness of outcome Acceptable to be different from 005
bull Example ICD Lead failure absolute difference ge 10 than comparator lead at 1-year α=005 Death alerts at ge 5 absolute difference α=010
Methodologic Challenge Alert Thresholds
Advantages of DELTA Surveillance
1 Automated Continuous Prospective Active Surveillance suitable for monitoring of large clinical datasets using straightforward analytic methods
2 Supports multiple simultaneous active surveillance analyses
3 Pre-specified analytic plan DELTA configured at outset of analysis to perform studies in accordance with SAPprotocol
4 Propensity matching is uniquely suited to comparative safety analyses Statistically robust very easy to interpret and explain and is conducive to post-hoc analysis for signal exploration
5 Pragmatic and Scalable Approach Validated in central data model and distributed models
25
Overview of DELTA
Frederic S Resnic MD MSc
and Susan Robbins
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
3
Introduction to DELTA
Automated Safety Surveillance
Frederic S Resnic MD MSc
Challenges of Existing Post-Market Medical Device Surveillance Approaches
1 Adverse event reporting unable to
estimate event rates (lsquodenominatorrsquo
issue) non-representative
(reporting behavior) resource
intensive
2 Post-Approval Studies generally
underpowered without
contemporary comparator groups
for low frequency safety events
3 Current approaches lack systematic
evaluation of real-world
performance information to provide
timely information to providers
manufacturers and regulators
Complementary role forProspective Near Real-Time Active Safety Surveillance
bull The term ldquoActive Surveillancerdquo implies differing monitoring strategies to different stakeholders
bull CDRH Non-research efforts that are part of routine post-market vigilance programs for specific (typically high-risk) medical devices
bull Industry Exploratory non-research post-market device performance monitoring
bull Academic Prospective pre-specified risk-adjusted time-limited analysis of RWE
bull Key attributes of medical device Active Surveillance
bull Timely Primary goal is to assess device performance in time frame that permits appropriate action (by manufacturer clinicians and regulators)
bull Repeated Assessments Minimize delay in identifying safety signal or absence of signal
bull Methodologically Appropriate Appropriate risk adjustment comparators and signal thresholds Minimize Type II error (false alarms) without missing opportunities to detect real issues
Defining Active Surveillance
bull Automated Surveillance extends Active Surveillance by leveraging software tools to support the pre-specified repeated evaluations of an accruing dataset
bull Automated Surveillance enables
bull Near real-time prospective evaluation of accruing experience
bull Simultaneous monitoring of multiple devices and outcomes
bull Application of robust data security protocols for remote data monitoring
Defining ldquoAutomatedrdquo Surveillance
Retrospective Single Study
Device Performance
Evaluation
Real Time Routine
Continuous Device
Performance MonitoringRetrospective
SequentialStudy
Accruing Data Sequential
Study
Accruing Data Near Real-Time
Sequential Study
Accruing Data Near Real-Time
Sequential Programmed
Active
Surveillance
Automated
Surveillance
Inexorable progression toward real-time high quality RWE availability as EHR RegistryCRN
and Informatics technologies mature
JAMIA 2006
JAMA 2010Circ Card Qual 2012
7
Device Active Surveillance 10 Years of Learning Lessons
NEJM 2017
CathPCI DELTA Study Background
bull Vascular Closure Devices (VCD) approved for use following cardiac catheterization procedures
bull VCD use variety of mechanicalpharmacologic designs and delivery mechanisms to secure device and accelerate clotting
bull PMA studies generally small and limited high quality post-market safety data regarding VCD
bull Mynx VCD suspected of having higher failure rates than alternative VCD
bull Observations from 5-hospital prospective safety surveillance (Kumar et al - Circ Card Qual Outcomes 2014)
bull Post-publication analysis of national registry study (Tavris
et al - J Invasive Card 2012)
CathPCI DELTA Study Background
CathPCI DELTA Study Hypothesis
1 Active prospective surveillance of national cardiovascular registry will demonstrate
Mynx VCD is associated with increased rates of post-procedure vascular complications andor bleeding compared with propensity matched patients receiving alternative VCD
2 Additionally Mynx safety signal will be heightened in high risk patient subgroups women agegt70yrs and diabetic patients
CathPCI DELTA Study Methods Overview
bull Prospective observational study using Propensity Matching (11) to compare similar populations of patients receiving Mynx following PCI to patients receiving other ldquoactiverdquo VCD
bull Primary endpoint Any vascular complication ndash composite of access site hematoma requiring treatment access site bleeding requiring intervention or RPH
bull Pre-specified protocol and statistical plan including adjustment for multiple comparisons and planned interim data reviews [Avoid ldquoData miningrdquo]
bull Pre-specified high risk patient subsets (DM female agege70yr) sensitivity analyses and ldquofalsification hypothesisrdquo analysis
bull Study oversight committee recommended post-hoc analyses including new falsification hypothesis and signal verification study
13
CathPCI DELTA Study Patient Flow Diagram
Source Resnic FS Majithia A et al NEJM Jan 2017
Methods Review What is Propensity Matching
ALL PCI Patients Receiving Mynx ALL PCI Patients Receiving Other VCD
Matched Mynx PatientsUnmatched
Mynx Patients Matched Non-Mynx Patients
PS
=
15
CathPCI DELTA Study Primary AnalysisMynx VCD was associated with a 59 increased risk of vascular complications
as compared with alternative VCD Signal apparent within 9 months
Source Resnic FS Majithia A et al NEJM Jan 2017
Pre-specified subgroup analysis was performed for high risk subgroups including women the agegt70 and patients with diabetes
Female Patients Age gt 70yr
Diabetic Patients
CathPCI DELTA Study Results High Risk Populations
Source Resnic FS Majithia A et al NEJM 2017
17
CathPCI DELTA Falsification Hypothesis
Source Resnic FS et al NEJM Jan 2017 (Supplementary Appendix)
bull Multiple options each with inherent limitations
bull Risk-adjusted performance compared with OPC ndashquestions of validity of OPC
bull Risk-adjusted performance compared with historical performance of alternative therapeutic option - issues around learning impacts and secular treatment trends
bull Direct device-device (or product group) comparisons (propensity matched or adjusted) ndash significant stakeholder sensitivity
bull Guiding Principle Select comparator to maximize validity within limitations of stakeholder sensitivitytolerance
Methodologic Challenge Selecting ComparatorsV
ali
dit
y
Se
ns
itiv
ity
Methodologic Challenge Selecting Methods
bull Multiple options for analyzing serial outcomes data using surveillance framework
bull Propensity matched analysis ndash robust addresses confounding most interpretable Weaknesses truly novel technology multiple comparisons treatment selection biases sample loss
bull Propensity adjusted analysis ndash robust addresses confounding maximizes sample Weaknesses interpretability multiple comparisons
bull Sequential Testing (CSUM SPRT etc) ndash indefinite surveillance address multiple comparison generalizable Weaknesses interpretability risk adjustment
bull Guiding Principle Maximize interpretability while minimizing risk of confounding
Ge
ne
rali
za
bilit
y
Inte
rpre
tab
ilit
y
bull Selecting appropriate thresholds for triggering additional explorationaction is critical Must be part of written protocol endorsed by all prior to start of data analysis
bull Recommended Select clinically meaningful difference in performance
bull Can differ based on outcome studied Small differences in mortality with larger differences tolerated with less serious outcomes
bull Select alpha (false-positive rate) based on seriousness of outcome Acceptable to be different from 005
bull Example ICD Lead failure absolute difference ge 10 than comparator lead at 1-year α=005 Death alerts at ge 5 absolute difference α=010
Methodologic Challenge Alert Thresholds
Advantages of DELTA Surveillance
1 Automated Continuous Prospective Active Surveillance suitable for monitoring of large clinical datasets using straightforward analytic methods
2 Supports multiple simultaneous active surveillance analyses
3 Pre-specified analytic plan DELTA configured at outset of analysis to perform studies in accordance with SAPprotocol
4 Propensity matching is uniquely suited to comparative safety analyses Statistically robust very easy to interpret and explain and is conducive to post-hoc analysis for signal exploration
5 Pragmatic and Scalable Approach Validated in central data model and distributed models
25
Overview of DELTA
Frederic S Resnic MD MSc
and Susan Robbins
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
Challenges of Existing Post-Market Medical Device Surveillance Approaches
1 Adverse event reporting unable to
estimate event rates (lsquodenominatorrsquo
issue) non-representative
(reporting behavior) resource
intensive
2 Post-Approval Studies generally
underpowered without
contemporary comparator groups
for low frequency safety events
3 Current approaches lack systematic
evaluation of real-world
performance information to provide
timely information to providers
manufacturers and regulators
Complementary role forProspective Near Real-Time Active Safety Surveillance
bull The term ldquoActive Surveillancerdquo implies differing monitoring strategies to different stakeholders
bull CDRH Non-research efforts that are part of routine post-market vigilance programs for specific (typically high-risk) medical devices
bull Industry Exploratory non-research post-market device performance monitoring
bull Academic Prospective pre-specified risk-adjusted time-limited analysis of RWE
bull Key attributes of medical device Active Surveillance
bull Timely Primary goal is to assess device performance in time frame that permits appropriate action (by manufacturer clinicians and regulators)
bull Repeated Assessments Minimize delay in identifying safety signal or absence of signal
bull Methodologically Appropriate Appropriate risk adjustment comparators and signal thresholds Minimize Type II error (false alarms) without missing opportunities to detect real issues
Defining Active Surveillance
bull Automated Surveillance extends Active Surveillance by leveraging software tools to support the pre-specified repeated evaluations of an accruing dataset
bull Automated Surveillance enables
bull Near real-time prospective evaluation of accruing experience
bull Simultaneous monitoring of multiple devices and outcomes
bull Application of robust data security protocols for remote data monitoring
Defining ldquoAutomatedrdquo Surveillance
Retrospective Single Study
Device Performance
Evaluation
Real Time Routine
Continuous Device
Performance MonitoringRetrospective
SequentialStudy
Accruing Data Sequential
Study
Accruing Data Near Real-Time
Sequential Study
Accruing Data Near Real-Time
Sequential Programmed
Active
Surveillance
Automated
Surveillance
Inexorable progression toward real-time high quality RWE availability as EHR RegistryCRN
and Informatics technologies mature
JAMIA 2006
JAMA 2010Circ Card Qual 2012
7
Device Active Surveillance 10 Years of Learning Lessons
NEJM 2017
CathPCI DELTA Study Background
bull Vascular Closure Devices (VCD) approved for use following cardiac catheterization procedures
bull VCD use variety of mechanicalpharmacologic designs and delivery mechanisms to secure device and accelerate clotting
bull PMA studies generally small and limited high quality post-market safety data regarding VCD
bull Mynx VCD suspected of having higher failure rates than alternative VCD
bull Observations from 5-hospital prospective safety surveillance (Kumar et al - Circ Card Qual Outcomes 2014)
bull Post-publication analysis of national registry study (Tavris
et al - J Invasive Card 2012)
CathPCI DELTA Study Background
CathPCI DELTA Study Hypothesis
1 Active prospective surveillance of national cardiovascular registry will demonstrate
Mynx VCD is associated with increased rates of post-procedure vascular complications andor bleeding compared with propensity matched patients receiving alternative VCD
2 Additionally Mynx safety signal will be heightened in high risk patient subgroups women agegt70yrs and diabetic patients
CathPCI DELTA Study Methods Overview
bull Prospective observational study using Propensity Matching (11) to compare similar populations of patients receiving Mynx following PCI to patients receiving other ldquoactiverdquo VCD
bull Primary endpoint Any vascular complication ndash composite of access site hematoma requiring treatment access site bleeding requiring intervention or RPH
bull Pre-specified protocol and statistical plan including adjustment for multiple comparisons and planned interim data reviews [Avoid ldquoData miningrdquo]
bull Pre-specified high risk patient subsets (DM female agege70yr) sensitivity analyses and ldquofalsification hypothesisrdquo analysis
bull Study oversight committee recommended post-hoc analyses including new falsification hypothesis and signal verification study
13
CathPCI DELTA Study Patient Flow Diagram
Source Resnic FS Majithia A et al NEJM Jan 2017
Methods Review What is Propensity Matching
ALL PCI Patients Receiving Mynx ALL PCI Patients Receiving Other VCD
Matched Mynx PatientsUnmatched
Mynx Patients Matched Non-Mynx Patients
PS
=
15
CathPCI DELTA Study Primary AnalysisMynx VCD was associated with a 59 increased risk of vascular complications
as compared with alternative VCD Signal apparent within 9 months
Source Resnic FS Majithia A et al NEJM Jan 2017
Pre-specified subgroup analysis was performed for high risk subgroups including women the agegt70 and patients with diabetes
Female Patients Age gt 70yr
Diabetic Patients
CathPCI DELTA Study Results High Risk Populations
Source Resnic FS Majithia A et al NEJM 2017
17
CathPCI DELTA Falsification Hypothesis
Source Resnic FS et al NEJM Jan 2017 (Supplementary Appendix)
bull Multiple options each with inherent limitations
bull Risk-adjusted performance compared with OPC ndashquestions of validity of OPC
bull Risk-adjusted performance compared with historical performance of alternative therapeutic option - issues around learning impacts and secular treatment trends
bull Direct device-device (or product group) comparisons (propensity matched or adjusted) ndash significant stakeholder sensitivity
bull Guiding Principle Select comparator to maximize validity within limitations of stakeholder sensitivitytolerance
Methodologic Challenge Selecting ComparatorsV
ali
dit
y
Se
ns
itiv
ity
Methodologic Challenge Selecting Methods
bull Multiple options for analyzing serial outcomes data using surveillance framework
bull Propensity matched analysis ndash robust addresses confounding most interpretable Weaknesses truly novel technology multiple comparisons treatment selection biases sample loss
bull Propensity adjusted analysis ndash robust addresses confounding maximizes sample Weaknesses interpretability multiple comparisons
bull Sequential Testing (CSUM SPRT etc) ndash indefinite surveillance address multiple comparison generalizable Weaknesses interpretability risk adjustment
bull Guiding Principle Maximize interpretability while minimizing risk of confounding
Ge
ne
rali
za
bilit
y
Inte
rpre
tab
ilit
y
bull Selecting appropriate thresholds for triggering additional explorationaction is critical Must be part of written protocol endorsed by all prior to start of data analysis
bull Recommended Select clinically meaningful difference in performance
bull Can differ based on outcome studied Small differences in mortality with larger differences tolerated with less serious outcomes
bull Select alpha (false-positive rate) based on seriousness of outcome Acceptable to be different from 005
bull Example ICD Lead failure absolute difference ge 10 than comparator lead at 1-year α=005 Death alerts at ge 5 absolute difference α=010
Methodologic Challenge Alert Thresholds
Advantages of DELTA Surveillance
1 Automated Continuous Prospective Active Surveillance suitable for monitoring of large clinical datasets using straightforward analytic methods
2 Supports multiple simultaneous active surveillance analyses
3 Pre-specified analytic plan DELTA configured at outset of analysis to perform studies in accordance with SAPprotocol
4 Propensity matching is uniquely suited to comparative safety analyses Statistically robust very easy to interpret and explain and is conducive to post-hoc analysis for signal exploration
5 Pragmatic and Scalable Approach Validated in central data model and distributed models
25
Overview of DELTA
Frederic S Resnic MD MSc
and Susan Robbins
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
bull The term ldquoActive Surveillancerdquo implies differing monitoring strategies to different stakeholders
bull CDRH Non-research efforts that are part of routine post-market vigilance programs for specific (typically high-risk) medical devices
bull Industry Exploratory non-research post-market device performance monitoring
bull Academic Prospective pre-specified risk-adjusted time-limited analysis of RWE
bull Key attributes of medical device Active Surveillance
bull Timely Primary goal is to assess device performance in time frame that permits appropriate action (by manufacturer clinicians and regulators)
bull Repeated Assessments Minimize delay in identifying safety signal or absence of signal
bull Methodologically Appropriate Appropriate risk adjustment comparators and signal thresholds Minimize Type II error (false alarms) without missing opportunities to detect real issues
Defining Active Surveillance
bull Automated Surveillance extends Active Surveillance by leveraging software tools to support the pre-specified repeated evaluations of an accruing dataset
bull Automated Surveillance enables
bull Near real-time prospective evaluation of accruing experience
bull Simultaneous monitoring of multiple devices and outcomes
bull Application of robust data security protocols for remote data monitoring
Defining ldquoAutomatedrdquo Surveillance
Retrospective Single Study
Device Performance
Evaluation
Real Time Routine
Continuous Device
Performance MonitoringRetrospective
SequentialStudy
Accruing Data Sequential
Study
Accruing Data Near Real-Time
Sequential Study
Accruing Data Near Real-Time
Sequential Programmed
Active
Surveillance
Automated
Surveillance
Inexorable progression toward real-time high quality RWE availability as EHR RegistryCRN
and Informatics technologies mature
JAMIA 2006
JAMA 2010Circ Card Qual 2012
7
Device Active Surveillance 10 Years of Learning Lessons
NEJM 2017
CathPCI DELTA Study Background
bull Vascular Closure Devices (VCD) approved for use following cardiac catheterization procedures
bull VCD use variety of mechanicalpharmacologic designs and delivery mechanisms to secure device and accelerate clotting
bull PMA studies generally small and limited high quality post-market safety data regarding VCD
bull Mynx VCD suspected of having higher failure rates than alternative VCD
bull Observations from 5-hospital prospective safety surveillance (Kumar et al - Circ Card Qual Outcomes 2014)
bull Post-publication analysis of national registry study (Tavris
et al - J Invasive Card 2012)
CathPCI DELTA Study Background
CathPCI DELTA Study Hypothesis
1 Active prospective surveillance of national cardiovascular registry will demonstrate
Mynx VCD is associated with increased rates of post-procedure vascular complications andor bleeding compared with propensity matched patients receiving alternative VCD
2 Additionally Mynx safety signal will be heightened in high risk patient subgroups women agegt70yrs and diabetic patients
CathPCI DELTA Study Methods Overview
bull Prospective observational study using Propensity Matching (11) to compare similar populations of patients receiving Mynx following PCI to patients receiving other ldquoactiverdquo VCD
bull Primary endpoint Any vascular complication ndash composite of access site hematoma requiring treatment access site bleeding requiring intervention or RPH
bull Pre-specified protocol and statistical plan including adjustment for multiple comparisons and planned interim data reviews [Avoid ldquoData miningrdquo]
bull Pre-specified high risk patient subsets (DM female agege70yr) sensitivity analyses and ldquofalsification hypothesisrdquo analysis
bull Study oversight committee recommended post-hoc analyses including new falsification hypothesis and signal verification study
13
CathPCI DELTA Study Patient Flow Diagram
Source Resnic FS Majithia A et al NEJM Jan 2017
Methods Review What is Propensity Matching
ALL PCI Patients Receiving Mynx ALL PCI Patients Receiving Other VCD
Matched Mynx PatientsUnmatched
Mynx Patients Matched Non-Mynx Patients
PS
=
15
CathPCI DELTA Study Primary AnalysisMynx VCD was associated with a 59 increased risk of vascular complications
as compared with alternative VCD Signal apparent within 9 months
Source Resnic FS Majithia A et al NEJM Jan 2017
Pre-specified subgroup analysis was performed for high risk subgroups including women the agegt70 and patients with diabetes
Female Patients Age gt 70yr
Diabetic Patients
CathPCI DELTA Study Results High Risk Populations
Source Resnic FS Majithia A et al NEJM 2017
17
CathPCI DELTA Falsification Hypothesis
Source Resnic FS et al NEJM Jan 2017 (Supplementary Appendix)
bull Multiple options each with inherent limitations
bull Risk-adjusted performance compared with OPC ndashquestions of validity of OPC
bull Risk-adjusted performance compared with historical performance of alternative therapeutic option - issues around learning impacts and secular treatment trends
bull Direct device-device (or product group) comparisons (propensity matched or adjusted) ndash significant stakeholder sensitivity
bull Guiding Principle Select comparator to maximize validity within limitations of stakeholder sensitivitytolerance
Methodologic Challenge Selecting ComparatorsV
ali
dit
y
Se
ns
itiv
ity
Methodologic Challenge Selecting Methods
bull Multiple options for analyzing serial outcomes data using surveillance framework
bull Propensity matched analysis ndash robust addresses confounding most interpretable Weaknesses truly novel technology multiple comparisons treatment selection biases sample loss
bull Propensity adjusted analysis ndash robust addresses confounding maximizes sample Weaknesses interpretability multiple comparisons
bull Sequential Testing (CSUM SPRT etc) ndash indefinite surveillance address multiple comparison generalizable Weaknesses interpretability risk adjustment
bull Guiding Principle Maximize interpretability while minimizing risk of confounding
Ge
ne
rali
za
bilit
y
Inte
rpre
tab
ilit
y
bull Selecting appropriate thresholds for triggering additional explorationaction is critical Must be part of written protocol endorsed by all prior to start of data analysis
bull Recommended Select clinically meaningful difference in performance
bull Can differ based on outcome studied Small differences in mortality with larger differences tolerated with less serious outcomes
bull Select alpha (false-positive rate) based on seriousness of outcome Acceptable to be different from 005
bull Example ICD Lead failure absolute difference ge 10 than comparator lead at 1-year α=005 Death alerts at ge 5 absolute difference α=010
Methodologic Challenge Alert Thresholds
Advantages of DELTA Surveillance
1 Automated Continuous Prospective Active Surveillance suitable for monitoring of large clinical datasets using straightforward analytic methods
2 Supports multiple simultaneous active surveillance analyses
3 Pre-specified analytic plan DELTA configured at outset of analysis to perform studies in accordance with SAPprotocol
4 Propensity matching is uniquely suited to comparative safety analyses Statistically robust very easy to interpret and explain and is conducive to post-hoc analysis for signal exploration
5 Pragmatic and Scalable Approach Validated in central data model and distributed models
25
Overview of DELTA
Frederic S Resnic MD MSc
and Susan Robbins
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
bull Automated Surveillance extends Active Surveillance by leveraging software tools to support the pre-specified repeated evaluations of an accruing dataset
bull Automated Surveillance enables
bull Near real-time prospective evaluation of accruing experience
bull Simultaneous monitoring of multiple devices and outcomes
bull Application of robust data security protocols for remote data monitoring
Defining ldquoAutomatedrdquo Surveillance
Retrospective Single Study
Device Performance
Evaluation
Real Time Routine
Continuous Device
Performance MonitoringRetrospective
SequentialStudy
Accruing Data Sequential
Study
Accruing Data Near Real-Time
Sequential Study
Accruing Data Near Real-Time
Sequential Programmed
Active
Surveillance
Automated
Surveillance
Inexorable progression toward real-time high quality RWE availability as EHR RegistryCRN
and Informatics technologies mature
JAMIA 2006
JAMA 2010Circ Card Qual 2012
7
Device Active Surveillance 10 Years of Learning Lessons
NEJM 2017
CathPCI DELTA Study Background
bull Vascular Closure Devices (VCD) approved for use following cardiac catheterization procedures
bull VCD use variety of mechanicalpharmacologic designs and delivery mechanisms to secure device and accelerate clotting
bull PMA studies generally small and limited high quality post-market safety data regarding VCD
bull Mynx VCD suspected of having higher failure rates than alternative VCD
bull Observations from 5-hospital prospective safety surveillance (Kumar et al - Circ Card Qual Outcomes 2014)
bull Post-publication analysis of national registry study (Tavris
et al - J Invasive Card 2012)
CathPCI DELTA Study Background
CathPCI DELTA Study Hypothesis
1 Active prospective surveillance of national cardiovascular registry will demonstrate
Mynx VCD is associated with increased rates of post-procedure vascular complications andor bleeding compared with propensity matched patients receiving alternative VCD
2 Additionally Mynx safety signal will be heightened in high risk patient subgroups women agegt70yrs and diabetic patients
CathPCI DELTA Study Methods Overview
bull Prospective observational study using Propensity Matching (11) to compare similar populations of patients receiving Mynx following PCI to patients receiving other ldquoactiverdquo VCD
bull Primary endpoint Any vascular complication ndash composite of access site hematoma requiring treatment access site bleeding requiring intervention or RPH
bull Pre-specified protocol and statistical plan including adjustment for multiple comparisons and planned interim data reviews [Avoid ldquoData miningrdquo]
bull Pre-specified high risk patient subsets (DM female agege70yr) sensitivity analyses and ldquofalsification hypothesisrdquo analysis
bull Study oversight committee recommended post-hoc analyses including new falsification hypothesis and signal verification study
13
CathPCI DELTA Study Patient Flow Diagram
Source Resnic FS Majithia A et al NEJM Jan 2017
Methods Review What is Propensity Matching
ALL PCI Patients Receiving Mynx ALL PCI Patients Receiving Other VCD
Matched Mynx PatientsUnmatched
Mynx Patients Matched Non-Mynx Patients
PS
=
15
CathPCI DELTA Study Primary AnalysisMynx VCD was associated with a 59 increased risk of vascular complications
as compared with alternative VCD Signal apparent within 9 months
Source Resnic FS Majithia A et al NEJM Jan 2017
Pre-specified subgroup analysis was performed for high risk subgroups including women the agegt70 and patients with diabetes
Female Patients Age gt 70yr
Diabetic Patients
CathPCI DELTA Study Results High Risk Populations
Source Resnic FS Majithia A et al NEJM 2017
17
CathPCI DELTA Falsification Hypothesis
Source Resnic FS et al NEJM Jan 2017 (Supplementary Appendix)
bull Multiple options each with inherent limitations
bull Risk-adjusted performance compared with OPC ndashquestions of validity of OPC
bull Risk-adjusted performance compared with historical performance of alternative therapeutic option - issues around learning impacts and secular treatment trends
bull Direct device-device (or product group) comparisons (propensity matched or adjusted) ndash significant stakeholder sensitivity
bull Guiding Principle Select comparator to maximize validity within limitations of stakeholder sensitivitytolerance
Methodologic Challenge Selecting ComparatorsV
ali
dit
y
Se
ns
itiv
ity
Methodologic Challenge Selecting Methods
bull Multiple options for analyzing serial outcomes data using surveillance framework
bull Propensity matched analysis ndash robust addresses confounding most interpretable Weaknesses truly novel technology multiple comparisons treatment selection biases sample loss
bull Propensity adjusted analysis ndash robust addresses confounding maximizes sample Weaknesses interpretability multiple comparisons
bull Sequential Testing (CSUM SPRT etc) ndash indefinite surveillance address multiple comparison generalizable Weaknesses interpretability risk adjustment
bull Guiding Principle Maximize interpretability while minimizing risk of confounding
Ge
ne
rali
za
bilit
y
Inte
rpre
tab
ilit
y
bull Selecting appropriate thresholds for triggering additional explorationaction is critical Must be part of written protocol endorsed by all prior to start of data analysis
bull Recommended Select clinically meaningful difference in performance
bull Can differ based on outcome studied Small differences in mortality with larger differences tolerated with less serious outcomes
bull Select alpha (false-positive rate) based on seriousness of outcome Acceptable to be different from 005
bull Example ICD Lead failure absolute difference ge 10 than comparator lead at 1-year α=005 Death alerts at ge 5 absolute difference α=010
Methodologic Challenge Alert Thresholds
Advantages of DELTA Surveillance
1 Automated Continuous Prospective Active Surveillance suitable for monitoring of large clinical datasets using straightforward analytic methods
2 Supports multiple simultaneous active surveillance analyses
3 Pre-specified analytic plan DELTA configured at outset of analysis to perform studies in accordance with SAPprotocol
4 Propensity matching is uniquely suited to comparative safety analyses Statistically robust very easy to interpret and explain and is conducive to post-hoc analysis for signal exploration
5 Pragmatic and Scalable Approach Validated in central data model and distributed models
25
Overview of DELTA
Frederic S Resnic MD MSc
and Susan Robbins
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
JAMIA 2006
JAMA 2010Circ Card Qual 2012
7
Device Active Surveillance 10 Years of Learning Lessons
NEJM 2017
CathPCI DELTA Study Background
bull Vascular Closure Devices (VCD) approved for use following cardiac catheterization procedures
bull VCD use variety of mechanicalpharmacologic designs and delivery mechanisms to secure device and accelerate clotting
bull PMA studies generally small and limited high quality post-market safety data regarding VCD
bull Mynx VCD suspected of having higher failure rates than alternative VCD
bull Observations from 5-hospital prospective safety surveillance (Kumar et al - Circ Card Qual Outcomes 2014)
bull Post-publication analysis of national registry study (Tavris
et al - J Invasive Card 2012)
CathPCI DELTA Study Background
CathPCI DELTA Study Hypothesis
1 Active prospective surveillance of national cardiovascular registry will demonstrate
Mynx VCD is associated with increased rates of post-procedure vascular complications andor bleeding compared with propensity matched patients receiving alternative VCD
2 Additionally Mynx safety signal will be heightened in high risk patient subgroups women agegt70yrs and diabetic patients
CathPCI DELTA Study Methods Overview
bull Prospective observational study using Propensity Matching (11) to compare similar populations of patients receiving Mynx following PCI to patients receiving other ldquoactiverdquo VCD
bull Primary endpoint Any vascular complication ndash composite of access site hematoma requiring treatment access site bleeding requiring intervention or RPH
bull Pre-specified protocol and statistical plan including adjustment for multiple comparisons and planned interim data reviews [Avoid ldquoData miningrdquo]
bull Pre-specified high risk patient subsets (DM female agege70yr) sensitivity analyses and ldquofalsification hypothesisrdquo analysis
bull Study oversight committee recommended post-hoc analyses including new falsification hypothesis and signal verification study
13
CathPCI DELTA Study Patient Flow Diagram
Source Resnic FS Majithia A et al NEJM Jan 2017
Methods Review What is Propensity Matching
ALL PCI Patients Receiving Mynx ALL PCI Patients Receiving Other VCD
Matched Mynx PatientsUnmatched
Mynx Patients Matched Non-Mynx Patients
PS
=
15
CathPCI DELTA Study Primary AnalysisMynx VCD was associated with a 59 increased risk of vascular complications
as compared with alternative VCD Signal apparent within 9 months
Source Resnic FS Majithia A et al NEJM Jan 2017
Pre-specified subgroup analysis was performed for high risk subgroups including women the agegt70 and patients with diabetes
Female Patients Age gt 70yr
Diabetic Patients
CathPCI DELTA Study Results High Risk Populations
Source Resnic FS Majithia A et al NEJM 2017
17
CathPCI DELTA Falsification Hypothesis
Source Resnic FS et al NEJM Jan 2017 (Supplementary Appendix)
bull Multiple options each with inherent limitations
bull Risk-adjusted performance compared with OPC ndashquestions of validity of OPC
bull Risk-adjusted performance compared with historical performance of alternative therapeutic option - issues around learning impacts and secular treatment trends
bull Direct device-device (or product group) comparisons (propensity matched or adjusted) ndash significant stakeholder sensitivity
bull Guiding Principle Select comparator to maximize validity within limitations of stakeholder sensitivitytolerance
Methodologic Challenge Selecting ComparatorsV
ali
dit
y
Se
ns
itiv
ity
Methodologic Challenge Selecting Methods
bull Multiple options for analyzing serial outcomes data using surveillance framework
bull Propensity matched analysis ndash robust addresses confounding most interpretable Weaknesses truly novel technology multiple comparisons treatment selection biases sample loss
bull Propensity adjusted analysis ndash robust addresses confounding maximizes sample Weaknesses interpretability multiple comparisons
bull Sequential Testing (CSUM SPRT etc) ndash indefinite surveillance address multiple comparison generalizable Weaknesses interpretability risk adjustment
bull Guiding Principle Maximize interpretability while minimizing risk of confounding
Ge
ne
rali
za
bilit
y
Inte
rpre
tab
ilit
y
bull Selecting appropriate thresholds for triggering additional explorationaction is critical Must be part of written protocol endorsed by all prior to start of data analysis
bull Recommended Select clinically meaningful difference in performance
bull Can differ based on outcome studied Small differences in mortality with larger differences tolerated with less serious outcomes
bull Select alpha (false-positive rate) based on seriousness of outcome Acceptable to be different from 005
bull Example ICD Lead failure absolute difference ge 10 than comparator lead at 1-year α=005 Death alerts at ge 5 absolute difference α=010
Methodologic Challenge Alert Thresholds
Advantages of DELTA Surveillance
1 Automated Continuous Prospective Active Surveillance suitable for monitoring of large clinical datasets using straightforward analytic methods
2 Supports multiple simultaneous active surveillance analyses
3 Pre-specified analytic plan DELTA configured at outset of analysis to perform studies in accordance with SAPprotocol
4 Propensity matching is uniquely suited to comparative safety analyses Statistically robust very easy to interpret and explain and is conducive to post-hoc analysis for signal exploration
5 Pragmatic and Scalable Approach Validated in central data model and distributed models
25
Overview of DELTA
Frederic S Resnic MD MSc
and Susan Robbins
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
CathPCI DELTA Study Background
bull Vascular Closure Devices (VCD) approved for use following cardiac catheterization procedures
bull VCD use variety of mechanicalpharmacologic designs and delivery mechanisms to secure device and accelerate clotting
bull PMA studies generally small and limited high quality post-market safety data regarding VCD
bull Mynx VCD suspected of having higher failure rates than alternative VCD
bull Observations from 5-hospital prospective safety surveillance (Kumar et al - Circ Card Qual Outcomes 2014)
bull Post-publication analysis of national registry study (Tavris
et al - J Invasive Card 2012)
CathPCI DELTA Study Background
CathPCI DELTA Study Hypothesis
1 Active prospective surveillance of national cardiovascular registry will demonstrate
Mynx VCD is associated with increased rates of post-procedure vascular complications andor bleeding compared with propensity matched patients receiving alternative VCD
2 Additionally Mynx safety signal will be heightened in high risk patient subgroups women agegt70yrs and diabetic patients
CathPCI DELTA Study Methods Overview
bull Prospective observational study using Propensity Matching (11) to compare similar populations of patients receiving Mynx following PCI to patients receiving other ldquoactiverdquo VCD
bull Primary endpoint Any vascular complication ndash composite of access site hematoma requiring treatment access site bleeding requiring intervention or RPH
bull Pre-specified protocol and statistical plan including adjustment for multiple comparisons and planned interim data reviews [Avoid ldquoData miningrdquo]
bull Pre-specified high risk patient subsets (DM female agege70yr) sensitivity analyses and ldquofalsification hypothesisrdquo analysis
bull Study oversight committee recommended post-hoc analyses including new falsification hypothesis and signal verification study
13
CathPCI DELTA Study Patient Flow Diagram
Source Resnic FS Majithia A et al NEJM Jan 2017
Methods Review What is Propensity Matching
ALL PCI Patients Receiving Mynx ALL PCI Patients Receiving Other VCD
Matched Mynx PatientsUnmatched
Mynx Patients Matched Non-Mynx Patients
PS
=
15
CathPCI DELTA Study Primary AnalysisMynx VCD was associated with a 59 increased risk of vascular complications
as compared with alternative VCD Signal apparent within 9 months
Source Resnic FS Majithia A et al NEJM Jan 2017
Pre-specified subgroup analysis was performed for high risk subgroups including women the agegt70 and patients with diabetes
Female Patients Age gt 70yr
Diabetic Patients
CathPCI DELTA Study Results High Risk Populations
Source Resnic FS Majithia A et al NEJM 2017
17
CathPCI DELTA Falsification Hypothesis
Source Resnic FS et al NEJM Jan 2017 (Supplementary Appendix)
bull Multiple options each with inherent limitations
bull Risk-adjusted performance compared with OPC ndashquestions of validity of OPC
bull Risk-adjusted performance compared with historical performance of alternative therapeutic option - issues around learning impacts and secular treatment trends
bull Direct device-device (or product group) comparisons (propensity matched or adjusted) ndash significant stakeholder sensitivity
bull Guiding Principle Select comparator to maximize validity within limitations of stakeholder sensitivitytolerance
Methodologic Challenge Selecting ComparatorsV
ali
dit
y
Se
ns
itiv
ity
Methodologic Challenge Selecting Methods
bull Multiple options for analyzing serial outcomes data using surveillance framework
bull Propensity matched analysis ndash robust addresses confounding most interpretable Weaknesses truly novel technology multiple comparisons treatment selection biases sample loss
bull Propensity adjusted analysis ndash robust addresses confounding maximizes sample Weaknesses interpretability multiple comparisons
bull Sequential Testing (CSUM SPRT etc) ndash indefinite surveillance address multiple comparison generalizable Weaknesses interpretability risk adjustment
bull Guiding Principle Maximize interpretability while minimizing risk of confounding
Ge
ne
rali
za
bilit
y
Inte
rpre
tab
ilit
y
bull Selecting appropriate thresholds for triggering additional explorationaction is critical Must be part of written protocol endorsed by all prior to start of data analysis
bull Recommended Select clinically meaningful difference in performance
bull Can differ based on outcome studied Small differences in mortality with larger differences tolerated with less serious outcomes
bull Select alpha (false-positive rate) based on seriousness of outcome Acceptable to be different from 005
bull Example ICD Lead failure absolute difference ge 10 than comparator lead at 1-year α=005 Death alerts at ge 5 absolute difference α=010
Methodologic Challenge Alert Thresholds
Advantages of DELTA Surveillance
1 Automated Continuous Prospective Active Surveillance suitable for monitoring of large clinical datasets using straightforward analytic methods
2 Supports multiple simultaneous active surveillance analyses
3 Pre-specified analytic plan DELTA configured at outset of analysis to perform studies in accordance with SAPprotocol
4 Propensity matching is uniquely suited to comparative safety analyses Statistically robust very easy to interpret and explain and is conducive to post-hoc analysis for signal exploration
5 Pragmatic and Scalable Approach Validated in central data model and distributed models
25
Overview of DELTA
Frederic S Resnic MD MSc
and Susan Robbins
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
CathPCI DELTA Study Background
CathPCI DELTA Study Hypothesis
1 Active prospective surveillance of national cardiovascular registry will demonstrate
Mynx VCD is associated with increased rates of post-procedure vascular complications andor bleeding compared with propensity matched patients receiving alternative VCD
2 Additionally Mynx safety signal will be heightened in high risk patient subgroups women agegt70yrs and diabetic patients
CathPCI DELTA Study Methods Overview
bull Prospective observational study using Propensity Matching (11) to compare similar populations of patients receiving Mynx following PCI to patients receiving other ldquoactiverdquo VCD
bull Primary endpoint Any vascular complication ndash composite of access site hematoma requiring treatment access site bleeding requiring intervention or RPH
bull Pre-specified protocol and statistical plan including adjustment for multiple comparisons and planned interim data reviews [Avoid ldquoData miningrdquo]
bull Pre-specified high risk patient subsets (DM female agege70yr) sensitivity analyses and ldquofalsification hypothesisrdquo analysis
bull Study oversight committee recommended post-hoc analyses including new falsification hypothesis and signal verification study
13
CathPCI DELTA Study Patient Flow Diagram
Source Resnic FS Majithia A et al NEJM Jan 2017
Methods Review What is Propensity Matching
ALL PCI Patients Receiving Mynx ALL PCI Patients Receiving Other VCD
Matched Mynx PatientsUnmatched
Mynx Patients Matched Non-Mynx Patients
PS
=
15
CathPCI DELTA Study Primary AnalysisMynx VCD was associated with a 59 increased risk of vascular complications
as compared with alternative VCD Signal apparent within 9 months
Source Resnic FS Majithia A et al NEJM Jan 2017
Pre-specified subgroup analysis was performed for high risk subgroups including women the agegt70 and patients with diabetes
Female Patients Age gt 70yr
Diabetic Patients
CathPCI DELTA Study Results High Risk Populations
Source Resnic FS Majithia A et al NEJM 2017
17
CathPCI DELTA Falsification Hypothesis
Source Resnic FS et al NEJM Jan 2017 (Supplementary Appendix)
bull Multiple options each with inherent limitations
bull Risk-adjusted performance compared with OPC ndashquestions of validity of OPC
bull Risk-adjusted performance compared with historical performance of alternative therapeutic option - issues around learning impacts and secular treatment trends
bull Direct device-device (or product group) comparisons (propensity matched or adjusted) ndash significant stakeholder sensitivity
bull Guiding Principle Select comparator to maximize validity within limitations of stakeholder sensitivitytolerance
Methodologic Challenge Selecting ComparatorsV
ali
dit
y
Se
ns
itiv
ity
Methodologic Challenge Selecting Methods
bull Multiple options for analyzing serial outcomes data using surveillance framework
bull Propensity matched analysis ndash robust addresses confounding most interpretable Weaknesses truly novel technology multiple comparisons treatment selection biases sample loss
bull Propensity adjusted analysis ndash robust addresses confounding maximizes sample Weaknesses interpretability multiple comparisons
bull Sequential Testing (CSUM SPRT etc) ndash indefinite surveillance address multiple comparison generalizable Weaknesses interpretability risk adjustment
bull Guiding Principle Maximize interpretability while minimizing risk of confounding
Ge
ne
rali
za
bilit
y
Inte
rpre
tab
ilit
y
bull Selecting appropriate thresholds for triggering additional explorationaction is critical Must be part of written protocol endorsed by all prior to start of data analysis
bull Recommended Select clinically meaningful difference in performance
bull Can differ based on outcome studied Small differences in mortality with larger differences tolerated with less serious outcomes
bull Select alpha (false-positive rate) based on seriousness of outcome Acceptable to be different from 005
bull Example ICD Lead failure absolute difference ge 10 than comparator lead at 1-year α=005 Death alerts at ge 5 absolute difference α=010
Methodologic Challenge Alert Thresholds
Advantages of DELTA Surveillance
1 Automated Continuous Prospective Active Surveillance suitable for monitoring of large clinical datasets using straightforward analytic methods
2 Supports multiple simultaneous active surveillance analyses
3 Pre-specified analytic plan DELTA configured at outset of analysis to perform studies in accordance with SAPprotocol
4 Propensity matching is uniquely suited to comparative safety analyses Statistically robust very easy to interpret and explain and is conducive to post-hoc analysis for signal exploration
5 Pragmatic and Scalable Approach Validated in central data model and distributed models
25
Overview of DELTA
Frederic S Resnic MD MSc
and Susan Robbins
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
CathPCI DELTA Study Hypothesis
1 Active prospective surveillance of national cardiovascular registry will demonstrate
Mynx VCD is associated with increased rates of post-procedure vascular complications andor bleeding compared with propensity matched patients receiving alternative VCD
2 Additionally Mynx safety signal will be heightened in high risk patient subgroups women agegt70yrs and diabetic patients
CathPCI DELTA Study Methods Overview
bull Prospective observational study using Propensity Matching (11) to compare similar populations of patients receiving Mynx following PCI to patients receiving other ldquoactiverdquo VCD
bull Primary endpoint Any vascular complication ndash composite of access site hematoma requiring treatment access site bleeding requiring intervention or RPH
bull Pre-specified protocol and statistical plan including adjustment for multiple comparisons and planned interim data reviews [Avoid ldquoData miningrdquo]
bull Pre-specified high risk patient subsets (DM female agege70yr) sensitivity analyses and ldquofalsification hypothesisrdquo analysis
bull Study oversight committee recommended post-hoc analyses including new falsification hypothesis and signal verification study
13
CathPCI DELTA Study Patient Flow Diagram
Source Resnic FS Majithia A et al NEJM Jan 2017
Methods Review What is Propensity Matching
ALL PCI Patients Receiving Mynx ALL PCI Patients Receiving Other VCD
Matched Mynx PatientsUnmatched
Mynx Patients Matched Non-Mynx Patients
PS
=
15
CathPCI DELTA Study Primary AnalysisMynx VCD was associated with a 59 increased risk of vascular complications
as compared with alternative VCD Signal apparent within 9 months
Source Resnic FS Majithia A et al NEJM Jan 2017
Pre-specified subgroup analysis was performed for high risk subgroups including women the agegt70 and patients with diabetes
Female Patients Age gt 70yr
Diabetic Patients
CathPCI DELTA Study Results High Risk Populations
Source Resnic FS Majithia A et al NEJM 2017
17
CathPCI DELTA Falsification Hypothesis
Source Resnic FS et al NEJM Jan 2017 (Supplementary Appendix)
bull Multiple options each with inherent limitations
bull Risk-adjusted performance compared with OPC ndashquestions of validity of OPC
bull Risk-adjusted performance compared with historical performance of alternative therapeutic option - issues around learning impacts and secular treatment trends
bull Direct device-device (or product group) comparisons (propensity matched or adjusted) ndash significant stakeholder sensitivity
bull Guiding Principle Select comparator to maximize validity within limitations of stakeholder sensitivitytolerance
Methodologic Challenge Selecting ComparatorsV
ali
dit
y
Se
ns
itiv
ity
Methodologic Challenge Selecting Methods
bull Multiple options for analyzing serial outcomes data using surveillance framework
bull Propensity matched analysis ndash robust addresses confounding most interpretable Weaknesses truly novel technology multiple comparisons treatment selection biases sample loss
bull Propensity adjusted analysis ndash robust addresses confounding maximizes sample Weaknesses interpretability multiple comparisons
bull Sequential Testing (CSUM SPRT etc) ndash indefinite surveillance address multiple comparison generalizable Weaknesses interpretability risk adjustment
bull Guiding Principle Maximize interpretability while minimizing risk of confounding
Ge
ne
rali
za
bilit
y
Inte
rpre
tab
ilit
y
bull Selecting appropriate thresholds for triggering additional explorationaction is critical Must be part of written protocol endorsed by all prior to start of data analysis
bull Recommended Select clinically meaningful difference in performance
bull Can differ based on outcome studied Small differences in mortality with larger differences tolerated with less serious outcomes
bull Select alpha (false-positive rate) based on seriousness of outcome Acceptable to be different from 005
bull Example ICD Lead failure absolute difference ge 10 than comparator lead at 1-year α=005 Death alerts at ge 5 absolute difference α=010
Methodologic Challenge Alert Thresholds
Advantages of DELTA Surveillance
1 Automated Continuous Prospective Active Surveillance suitable for monitoring of large clinical datasets using straightforward analytic methods
2 Supports multiple simultaneous active surveillance analyses
3 Pre-specified analytic plan DELTA configured at outset of analysis to perform studies in accordance with SAPprotocol
4 Propensity matching is uniquely suited to comparative safety analyses Statistically robust very easy to interpret and explain and is conducive to post-hoc analysis for signal exploration
5 Pragmatic and Scalable Approach Validated in central data model and distributed models
25
Overview of DELTA
Frederic S Resnic MD MSc
and Susan Robbins
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
CathPCI DELTA Study Methods Overview
bull Prospective observational study using Propensity Matching (11) to compare similar populations of patients receiving Mynx following PCI to patients receiving other ldquoactiverdquo VCD
bull Primary endpoint Any vascular complication ndash composite of access site hematoma requiring treatment access site bleeding requiring intervention or RPH
bull Pre-specified protocol and statistical plan including adjustment for multiple comparisons and planned interim data reviews [Avoid ldquoData miningrdquo]
bull Pre-specified high risk patient subsets (DM female agege70yr) sensitivity analyses and ldquofalsification hypothesisrdquo analysis
bull Study oversight committee recommended post-hoc analyses including new falsification hypothesis and signal verification study
13
CathPCI DELTA Study Patient Flow Diagram
Source Resnic FS Majithia A et al NEJM Jan 2017
Methods Review What is Propensity Matching
ALL PCI Patients Receiving Mynx ALL PCI Patients Receiving Other VCD
Matched Mynx PatientsUnmatched
Mynx Patients Matched Non-Mynx Patients
PS
=
15
CathPCI DELTA Study Primary AnalysisMynx VCD was associated with a 59 increased risk of vascular complications
as compared with alternative VCD Signal apparent within 9 months
Source Resnic FS Majithia A et al NEJM Jan 2017
Pre-specified subgroup analysis was performed for high risk subgroups including women the agegt70 and patients with diabetes
Female Patients Age gt 70yr
Diabetic Patients
CathPCI DELTA Study Results High Risk Populations
Source Resnic FS Majithia A et al NEJM 2017
17
CathPCI DELTA Falsification Hypothesis
Source Resnic FS et al NEJM Jan 2017 (Supplementary Appendix)
bull Multiple options each with inherent limitations
bull Risk-adjusted performance compared with OPC ndashquestions of validity of OPC
bull Risk-adjusted performance compared with historical performance of alternative therapeutic option - issues around learning impacts and secular treatment trends
bull Direct device-device (or product group) comparisons (propensity matched or adjusted) ndash significant stakeholder sensitivity
bull Guiding Principle Select comparator to maximize validity within limitations of stakeholder sensitivitytolerance
Methodologic Challenge Selecting ComparatorsV
ali
dit
y
Se
ns
itiv
ity
Methodologic Challenge Selecting Methods
bull Multiple options for analyzing serial outcomes data using surveillance framework
bull Propensity matched analysis ndash robust addresses confounding most interpretable Weaknesses truly novel technology multiple comparisons treatment selection biases sample loss
bull Propensity adjusted analysis ndash robust addresses confounding maximizes sample Weaknesses interpretability multiple comparisons
bull Sequential Testing (CSUM SPRT etc) ndash indefinite surveillance address multiple comparison generalizable Weaknesses interpretability risk adjustment
bull Guiding Principle Maximize interpretability while minimizing risk of confounding
Ge
ne
rali
za
bilit
y
Inte
rpre
tab
ilit
y
bull Selecting appropriate thresholds for triggering additional explorationaction is critical Must be part of written protocol endorsed by all prior to start of data analysis
bull Recommended Select clinically meaningful difference in performance
bull Can differ based on outcome studied Small differences in mortality with larger differences tolerated with less serious outcomes
bull Select alpha (false-positive rate) based on seriousness of outcome Acceptable to be different from 005
bull Example ICD Lead failure absolute difference ge 10 than comparator lead at 1-year α=005 Death alerts at ge 5 absolute difference α=010
Methodologic Challenge Alert Thresholds
Advantages of DELTA Surveillance
1 Automated Continuous Prospective Active Surveillance suitable for monitoring of large clinical datasets using straightforward analytic methods
2 Supports multiple simultaneous active surveillance analyses
3 Pre-specified analytic plan DELTA configured at outset of analysis to perform studies in accordance with SAPprotocol
4 Propensity matching is uniquely suited to comparative safety analyses Statistically robust very easy to interpret and explain and is conducive to post-hoc analysis for signal exploration
5 Pragmatic and Scalable Approach Validated in central data model and distributed models
25
Overview of DELTA
Frederic S Resnic MD MSc
and Susan Robbins
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
13
CathPCI DELTA Study Patient Flow Diagram
Source Resnic FS Majithia A et al NEJM Jan 2017
Methods Review What is Propensity Matching
ALL PCI Patients Receiving Mynx ALL PCI Patients Receiving Other VCD
Matched Mynx PatientsUnmatched
Mynx Patients Matched Non-Mynx Patients
PS
=
15
CathPCI DELTA Study Primary AnalysisMynx VCD was associated with a 59 increased risk of vascular complications
as compared with alternative VCD Signal apparent within 9 months
Source Resnic FS Majithia A et al NEJM Jan 2017
Pre-specified subgroup analysis was performed for high risk subgroups including women the agegt70 and patients with diabetes
Female Patients Age gt 70yr
Diabetic Patients
CathPCI DELTA Study Results High Risk Populations
Source Resnic FS Majithia A et al NEJM 2017
17
CathPCI DELTA Falsification Hypothesis
Source Resnic FS et al NEJM Jan 2017 (Supplementary Appendix)
bull Multiple options each with inherent limitations
bull Risk-adjusted performance compared with OPC ndashquestions of validity of OPC
bull Risk-adjusted performance compared with historical performance of alternative therapeutic option - issues around learning impacts and secular treatment trends
bull Direct device-device (or product group) comparisons (propensity matched or adjusted) ndash significant stakeholder sensitivity
bull Guiding Principle Select comparator to maximize validity within limitations of stakeholder sensitivitytolerance
Methodologic Challenge Selecting ComparatorsV
ali
dit
y
Se
ns
itiv
ity
Methodologic Challenge Selecting Methods
bull Multiple options for analyzing serial outcomes data using surveillance framework
bull Propensity matched analysis ndash robust addresses confounding most interpretable Weaknesses truly novel technology multiple comparisons treatment selection biases sample loss
bull Propensity adjusted analysis ndash robust addresses confounding maximizes sample Weaknesses interpretability multiple comparisons
bull Sequential Testing (CSUM SPRT etc) ndash indefinite surveillance address multiple comparison generalizable Weaknesses interpretability risk adjustment
bull Guiding Principle Maximize interpretability while minimizing risk of confounding
Ge
ne
rali
za
bilit
y
Inte
rpre
tab
ilit
y
bull Selecting appropriate thresholds for triggering additional explorationaction is critical Must be part of written protocol endorsed by all prior to start of data analysis
bull Recommended Select clinically meaningful difference in performance
bull Can differ based on outcome studied Small differences in mortality with larger differences tolerated with less serious outcomes
bull Select alpha (false-positive rate) based on seriousness of outcome Acceptable to be different from 005
bull Example ICD Lead failure absolute difference ge 10 than comparator lead at 1-year α=005 Death alerts at ge 5 absolute difference α=010
Methodologic Challenge Alert Thresholds
Advantages of DELTA Surveillance
1 Automated Continuous Prospective Active Surveillance suitable for monitoring of large clinical datasets using straightforward analytic methods
2 Supports multiple simultaneous active surveillance analyses
3 Pre-specified analytic plan DELTA configured at outset of analysis to perform studies in accordance with SAPprotocol
4 Propensity matching is uniquely suited to comparative safety analyses Statistically robust very easy to interpret and explain and is conducive to post-hoc analysis for signal exploration
5 Pragmatic and Scalable Approach Validated in central data model and distributed models
25
Overview of DELTA
Frederic S Resnic MD MSc
and Susan Robbins
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
Methods Review What is Propensity Matching
ALL PCI Patients Receiving Mynx ALL PCI Patients Receiving Other VCD
Matched Mynx PatientsUnmatched
Mynx Patients Matched Non-Mynx Patients
PS
=
15
CathPCI DELTA Study Primary AnalysisMynx VCD was associated with a 59 increased risk of vascular complications
as compared with alternative VCD Signal apparent within 9 months
Source Resnic FS Majithia A et al NEJM Jan 2017
Pre-specified subgroup analysis was performed for high risk subgroups including women the agegt70 and patients with diabetes
Female Patients Age gt 70yr
Diabetic Patients
CathPCI DELTA Study Results High Risk Populations
Source Resnic FS Majithia A et al NEJM 2017
17
CathPCI DELTA Falsification Hypothesis
Source Resnic FS et al NEJM Jan 2017 (Supplementary Appendix)
bull Multiple options each with inherent limitations
bull Risk-adjusted performance compared with OPC ndashquestions of validity of OPC
bull Risk-adjusted performance compared with historical performance of alternative therapeutic option - issues around learning impacts and secular treatment trends
bull Direct device-device (or product group) comparisons (propensity matched or adjusted) ndash significant stakeholder sensitivity
bull Guiding Principle Select comparator to maximize validity within limitations of stakeholder sensitivitytolerance
Methodologic Challenge Selecting ComparatorsV
ali
dit
y
Se
ns
itiv
ity
Methodologic Challenge Selecting Methods
bull Multiple options for analyzing serial outcomes data using surveillance framework
bull Propensity matched analysis ndash robust addresses confounding most interpretable Weaknesses truly novel technology multiple comparisons treatment selection biases sample loss
bull Propensity adjusted analysis ndash robust addresses confounding maximizes sample Weaknesses interpretability multiple comparisons
bull Sequential Testing (CSUM SPRT etc) ndash indefinite surveillance address multiple comparison generalizable Weaknesses interpretability risk adjustment
bull Guiding Principle Maximize interpretability while minimizing risk of confounding
Ge
ne
rali
za
bilit
y
Inte
rpre
tab
ilit
y
bull Selecting appropriate thresholds for triggering additional explorationaction is critical Must be part of written protocol endorsed by all prior to start of data analysis
bull Recommended Select clinically meaningful difference in performance
bull Can differ based on outcome studied Small differences in mortality with larger differences tolerated with less serious outcomes
bull Select alpha (false-positive rate) based on seriousness of outcome Acceptable to be different from 005
bull Example ICD Lead failure absolute difference ge 10 than comparator lead at 1-year α=005 Death alerts at ge 5 absolute difference α=010
Methodologic Challenge Alert Thresholds
Advantages of DELTA Surveillance
1 Automated Continuous Prospective Active Surveillance suitable for monitoring of large clinical datasets using straightforward analytic methods
2 Supports multiple simultaneous active surveillance analyses
3 Pre-specified analytic plan DELTA configured at outset of analysis to perform studies in accordance with SAPprotocol
4 Propensity matching is uniquely suited to comparative safety analyses Statistically robust very easy to interpret and explain and is conducive to post-hoc analysis for signal exploration
5 Pragmatic and Scalable Approach Validated in central data model and distributed models
25
Overview of DELTA
Frederic S Resnic MD MSc
and Susan Robbins
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
15
CathPCI DELTA Study Primary AnalysisMynx VCD was associated with a 59 increased risk of vascular complications
as compared with alternative VCD Signal apparent within 9 months
Source Resnic FS Majithia A et al NEJM Jan 2017
Pre-specified subgroup analysis was performed for high risk subgroups including women the agegt70 and patients with diabetes
Female Patients Age gt 70yr
Diabetic Patients
CathPCI DELTA Study Results High Risk Populations
Source Resnic FS Majithia A et al NEJM 2017
17
CathPCI DELTA Falsification Hypothesis
Source Resnic FS et al NEJM Jan 2017 (Supplementary Appendix)
bull Multiple options each with inherent limitations
bull Risk-adjusted performance compared with OPC ndashquestions of validity of OPC
bull Risk-adjusted performance compared with historical performance of alternative therapeutic option - issues around learning impacts and secular treatment trends
bull Direct device-device (or product group) comparisons (propensity matched or adjusted) ndash significant stakeholder sensitivity
bull Guiding Principle Select comparator to maximize validity within limitations of stakeholder sensitivitytolerance
Methodologic Challenge Selecting ComparatorsV
ali
dit
y
Se
ns
itiv
ity
Methodologic Challenge Selecting Methods
bull Multiple options for analyzing serial outcomes data using surveillance framework
bull Propensity matched analysis ndash robust addresses confounding most interpretable Weaknesses truly novel technology multiple comparisons treatment selection biases sample loss
bull Propensity adjusted analysis ndash robust addresses confounding maximizes sample Weaknesses interpretability multiple comparisons
bull Sequential Testing (CSUM SPRT etc) ndash indefinite surveillance address multiple comparison generalizable Weaknesses interpretability risk adjustment
bull Guiding Principle Maximize interpretability while minimizing risk of confounding
Ge
ne
rali
za
bilit
y
Inte
rpre
tab
ilit
y
bull Selecting appropriate thresholds for triggering additional explorationaction is critical Must be part of written protocol endorsed by all prior to start of data analysis
bull Recommended Select clinically meaningful difference in performance
bull Can differ based on outcome studied Small differences in mortality with larger differences tolerated with less serious outcomes
bull Select alpha (false-positive rate) based on seriousness of outcome Acceptable to be different from 005
bull Example ICD Lead failure absolute difference ge 10 than comparator lead at 1-year α=005 Death alerts at ge 5 absolute difference α=010
Methodologic Challenge Alert Thresholds
Advantages of DELTA Surveillance
1 Automated Continuous Prospective Active Surveillance suitable for monitoring of large clinical datasets using straightforward analytic methods
2 Supports multiple simultaneous active surveillance analyses
3 Pre-specified analytic plan DELTA configured at outset of analysis to perform studies in accordance with SAPprotocol
4 Propensity matching is uniquely suited to comparative safety analyses Statistically robust very easy to interpret and explain and is conducive to post-hoc analysis for signal exploration
5 Pragmatic and Scalable Approach Validated in central data model and distributed models
25
Overview of DELTA
Frederic S Resnic MD MSc
and Susan Robbins
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
Pre-specified subgroup analysis was performed for high risk subgroups including women the agegt70 and patients with diabetes
Female Patients Age gt 70yr
Diabetic Patients
CathPCI DELTA Study Results High Risk Populations
Source Resnic FS Majithia A et al NEJM 2017
17
CathPCI DELTA Falsification Hypothesis
Source Resnic FS et al NEJM Jan 2017 (Supplementary Appendix)
bull Multiple options each with inherent limitations
bull Risk-adjusted performance compared with OPC ndashquestions of validity of OPC
bull Risk-adjusted performance compared with historical performance of alternative therapeutic option - issues around learning impacts and secular treatment trends
bull Direct device-device (or product group) comparisons (propensity matched or adjusted) ndash significant stakeholder sensitivity
bull Guiding Principle Select comparator to maximize validity within limitations of stakeholder sensitivitytolerance
Methodologic Challenge Selecting ComparatorsV
ali
dit
y
Se
ns
itiv
ity
Methodologic Challenge Selecting Methods
bull Multiple options for analyzing serial outcomes data using surveillance framework
bull Propensity matched analysis ndash robust addresses confounding most interpretable Weaknesses truly novel technology multiple comparisons treatment selection biases sample loss
bull Propensity adjusted analysis ndash robust addresses confounding maximizes sample Weaknesses interpretability multiple comparisons
bull Sequential Testing (CSUM SPRT etc) ndash indefinite surveillance address multiple comparison generalizable Weaknesses interpretability risk adjustment
bull Guiding Principle Maximize interpretability while minimizing risk of confounding
Ge
ne
rali
za
bilit
y
Inte
rpre
tab
ilit
y
bull Selecting appropriate thresholds for triggering additional explorationaction is critical Must be part of written protocol endorsed by all prior to start of data analysis
bull Recommended Select clinically meaningful difference in performance
bull Can differ based on outcome studied Small differences in mortality with larger differences tolerated with less serious outcomes
bull Select alpha (false-positive rate) based on seriousness of outcome Acceptable to be different from 005
bull Example ICD Lead failure absolute difference ge 10 than comparator lead at 1-year α=005 Death alerts at ge 5 absolute difference α=010
Methodologic Challenge Alert Thresholds
Advantages of DELTA Surveillance
1 Automated Continuous Prospective Active Surveillance suitable for monitoring of large clinical datasets using straightforward analytic methods
2 Supports multiple simultaneous active surveillance analyses
3 Pre-specified analytic plan DELTA configured at outset of analysis to perform studies in accordance with SAPprotocol
4 Propensity matching is uniquely suited to comparative safety analyses Statistically robust very easy to interpret and explain and is conducive to post-hoc analysis for signal exploration
5 Pragmatic and Scalable Approach Validated in central data model and distributed models
25
Overview of DELTA
Frederic S Resnic MD MSc
and Susan Robbins
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
17
CathPCI DELTA Falsification Hypothesis
Source Resnic FS et al NEJM Jan 2017 (Supplementary Appendix)
bull Multiple options each with inherent limitations
bull Risk-adjusted performance compared with OPC ndashquestions of validity of OPC
bull Risk-adjusted performance compared with historical performance of alternative therapeutic option - issues around learning impacts and secular treatment trends
bull Direct device-device (or product group) comparisons (propensity matched or adjusted) ndash significant stakeholder sensitivity
bull Guiding Principle Select comparator to maximize validity within limitations of stakeholder sensitivitytolerance
Methodologic Challenge Selecting ComparatorsV
ali
dit
y
Se
ns
itiv
ity
Methodologic Challenge Selecting Methods
bull Multiple options for analyzing serial outcomes data using surveillance framework
bull Propensity matched analysis ndash robust addresses confounding most interpretable Weaknesses truly novel technology multiple comparisons treatment selection biases sample loss
bull Propensity adjusted analysis ndash robust addresses confounding maximizes sample Weaknesses interpretability multiple comparisons
bull Sequential Testing (CSUM SPRT etc) ndash indefinite surveillance address multiple comparison generalizable Weaknesses interpretability risk adjustment
bull Guiding Principle Maximize interpretability while minimizing risk of confounding
Ge
ne
rali
za
bilit
y
Inte
rpre
tab
ilit
y
bull Selecting appropriate thresholds for triggering additional explorationaction is critical Must be part of written protocol endorsed by all prior to start of data analysis
bull Recommended Select clinically meaningful difference in performance
bull Can differ based on outcome studied Small differences in mortality with larger differences tolerated with less serious outcomes
bull Select alpha (false-positive rate) based on seriousness of outcome Acceptable to be different from 005
bull Example ICD Lead failure absolute difference ge 10 than comparator lead at 1-year α=005 Death alerts at ge 5 absolute difference α=010
Methodologic Challenge Alert Thresholds
Advantages of DELTA Surveillance
1 Automated Continuous Prospective Active Surveillance suitable for monitoring of large clinical datasets using straightforward analytic methods
2 Supports multiple simultaneous active surveillance analyses
3 Pre-specified analytic plan DELTA configured at outset of analysis to perform studies in accordance with SAPprotocol
4 Propensity matching is uniquely suited to comparative safety analyses Statistically robust very easy to interpret and explain and is conducive to post-hoc analysis for signal exploration
5 Pragmatic and Scalable Approach Validated in central data model and distributed models
25
Overview of DELTA
Frederic S Resnic MD MSc
and Susan Robbins
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
bull Multiple options each with inherent limitations
bull Risk-adjusted performance compared with OPC ndashquestions of validity of OPC
bull Risk-adjusted performance compared with historical performance of alternative therapeutic option - issues around learning impacts and secular treatment trends
bull Direct device-device (or product group) comparisons (propensity matched or adjusted) ndash significant stakeholder sensitivity
bull Guiding Principle Select comparator to maximize validity within limitations of stakeholder sensitivitytolerance
Methodologic Challenge Selecting ComparatorsV
ali
dit
y
Se
ns
itiv
ity
Methodologic Challenge Selecting Methods
bull Multiple options for analyzing serial outcomes data using surveillance framework
bull Propensity matched analysis ndash robust addresses confounding most interpretable Weaknesses truly novel technology multiple comparisons treatment selection biases sample loss
bull Propensity adjusted analysis ndash robust addresses confounding maximizes sample Weaknesses interpretability multiple comparisons
bull Sequential Testing (CSUM SPRT etc) ndash indefinite surveillance address multiple comparison generalizable Weaknesses interpretability risk adjustment
bull Guiding Principle Maximize interpretability while minimizing risk of confounding
Ge
ne
rali
za
bilit
y
Inte
rpre
tab
ilit
y
bull Selecting appropriate thresholds for triggering additional explorationaction is critical Must be part of written protocol endorsed by all prior to start of data analysis
bull Recommended Select clinically meaningful difference in performance
bull Can differ based on outcome studied Small differences in mortality with larger differences tolerated with less serious outcomes
bull Select alpha (false-positive rate) based on seriousness of outcome Acceptable to be different from 005
bull Example ICD Lead failure absolute difference ge 10 than comparator lead at 1-year α=005 Death alerts at ge 5 absolute difference α=010
Methodologic Challenge Alert Thresholds
Advantages of DELTA Surveillance
1 Automated Continuous Prospective Active Surveillance suitable for monitoring of large clinical datasets using straightforward analytic methods
2 Supports multiple simultaneous active surveillance analyses
3 Pre-specified analytic plan DELTA configured at outset of analysis to perform studies in accordance with SAPprotocol
4 Propensity matching is uniquely suited to comparative safety analyses Statistically robust very easy to interpret and explain and is conducive to post-hoc analysis for signal exploration
5 Pragmatic and Scalable Approach Validated in central data model and distributed models
25
Overview of DELTA
Frederic S Resnic MD MSc
and Susan Robbins
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
Methodologic Challenge Selecting Methods
bull Multiple options for analyzing serial outcomes data using surveillance framework
bull Propensity matched analysis ndash robust addresses confounding most interpretable Weaknesses truly novel technology multiple comparisons treatment selection biases sample loss
bull Propensity adjusted analysis ndash robust addresses confounding maximizes sample Weaknesses interpretability multiple comparisons
bull Sequential Testing (CSUM SPRT etc) ndash indefinite surveillance address multiple comparison generalizable Weaknesses interpretability risk adjustment
bull Guiding Principle Maximize interpretability while minimizing risk of confounding
Ge
ne
rali
za
bilit
y
Inte
rpre
tab
ilit
y
bull Selecting appropriate thresholds for triggering additional explorationaction is critical Must be part of written protocol endorsed by all prior to start of data analysis
bull Recommended Select clinically meaningful difference in performance
bull Can differ based on outcome studied Small differences in mortality with larger differences tolerated with less serious outcomes
bull Select alpha (false-positive rate) based on seriousness of outcome Acceptable to be different from 005
bull Example ICD Lead failure absolute difference ge 10 than comparator lead at 1-year α=005 Death alerts at ge 5 absolute difference α=010
Methodologic Challenge Alert Thresholds
Advantages of DELTA Surveillance
1 Automated Continuous Prospective Active Surveillance suitable for monitoring of large clinical datasets using straightforward analytic methods
2 Supports multiple simultaneous active surveillance analyses
3 Pre-specified analytic plan DELTA configured at outset of analysis to perform studies in accordance with SAPprotocol
4 Propensity matching is uniquely suited to comparative safety analyses Statistically robust very easy to interpret and explain and is conducive to post-hoc analysis for signal exploration
5 Pragmatic and Scalable Approach Validated in central data model and distributed models
25
Overview of DELTA
Frederic S Resnic MD MSc
and Susan Robbins
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
bull Selecting appropriate thresholds for triggering additional explorationaction is critical Must be part of written protocol endorsed by all prior to start of data analysis
bull Recommended Select clinically meaningful difference in performance
bull Can differ based on outcome studied Small differences in mortality with larger differences tolerated with less serious outcomes
bull Select alpha (false-positive rate) based on seriousness of outcome Acceptable to be different from 005
bull Example ICD Lead failure absolute difference ge 10 than comparator lead at 1-year α=005 Death alerts at ge 5 absolute difference α=010
Methodologic Challenge Alert Thresholds
Advantages of DELTA Surveillance
1 Automated Continuous Prospective Active Surveillance suitable for monitoring of large clinical datasets using straightforward analytic methods
2 Supports multiple simultaneous active surveillance analyses
3 Pre-specified analytic plan DELTA configured at outset of analysis to perform studies in accordance with SAPprotocol
4 Propensity matching is uniquely suited to comparative safety analyses Statistically robust very easy to interpret and explain and is conducive to post-hoc analysis for signal exploration
5 Pragmatic and Scalable Approach Validated in central data model and distributed models
25
Overview of DELTA
Frederic S Resnic MD MSc
and Susan Robbins
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
Advantages of DELTA Surveillance
1 Automated Continuous Prospective Active Surveillance suitable for monitoring of large clinical datasets using straightforward analytic methods
2 Supports multiple simultaneous active surveillance analyses
3 Pre-specified analytic plan DELTA configured at outset of analysis to perform studies in accordance with SAPprotocol
4 Propensity matching is uniquely suited to comparative safety analyses Statistically robust very easy to interpret and explain and is conducive to post-hoc analysis for signal exploration
5 Pragmatic and Scalable Approach Validated in central data model and distributed models
25
Overview of DELTA
Frederic S Resnic MD MSc
and Susan Robbins
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
25
Overview of DELTA
Frederic S Resnic MD MSc
and Susan Robbins
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
26
Overview of DELTA System
DELTA Open-Source Version 361
bull DELTA user interface with integrated DELTAlyticsanalytic engine utilizing MySQL as back-end data repository
bull Installation packages available on BitBucket
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
Overview of DELTA System
JUST TO MENTIONhellipSite Admin Setup
bull Advanced Featuresbull DELTAlytics statistical package interface setup ndash part of Installation
bull Site Organizations
bull Users PermissionsRoles (all Demo Users are Organization Admins)
bull Projects Groups
bull Source Data Connections and Table Relationships (Rely on your data managers)
bull JDBC databases allowed ndash MSSQL MySQL
bull Requires Database source file ndash even a Flat File must be imported to db
bull Alerts and Notifications
Note Topic detail not covered today
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
28
DELTA Study Life-cycle Stages
bull Model Builder ndash data field definitions and utilization characteristics
bull Study Configuration ndash analysis method parameters and data set extraction
bull Results ndash table and graph visualization
Overview of DELTA System
Note Topic detail not covered today
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
29
Requires Completed Data SourceTables and Table Relationships
bull Atomic Fields
bull Field Creation ndash virtual (primarysecondary)
bull Handling Missing
bull Data Acquisition (Staging) and Extraction (Flat Table)
bull Descriptive Statistics (StagingFlat Table)
Note Topic detail not covered today
Overview ndash Data Model Builder
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
30
Overview ndash Atomic and Virtual Fields
Model Fields and Descriptive Stats
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
31
Overview ndash Study Configuration
Requires Successful Model Processing
bull Model Selection
bull Identification of Study Dates Case and Sequencer Fields
bull Analysis Method Selection
bull Completion of Method Parameters
bull Study Submission and Analytic Processing
Note Topic detail not covered today
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
32
Overview ndashDELTA Methods
DELTA Statistical Methods
bull Logistic Regression
(including LR Make and LR Apply)
bull Propensity Analysis
(including PA Create PA Match and PA Outcomes)
bull Survival
(including standard and propensity score matched survival) Note Topic detail not covered today
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
33
Overview ndash Propensity Analysis Method
DELTA Propensity Analysis Method
bull Matched propensity parameters
bull Outcomes ndash single or multiple
bull Covariate selection for match formula
bull Match characteristics
bull Options - Alpha Spending and Automated Variable Selection
bull Method configuration divided as separate analysis steps
bull Create match formula ndash formula stored
bull Match using formulandash case set stored
bull Outcomes ndash process outcomes of existing match set
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
34
Overview - Study Results
Results Visualization
bull Dashboard
bull Method specific Charts and Tables
bull Export to CSV PDF PNG JPEG
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
35
Overview - Study Results
List of PA chart and table visualizations
bull Risk Adjusted ObservedExpected Chart (Periodic)
bull Event Rate Comparison Chart
bull Risk Adjusted ObservedExpected Chart (Area)
bull Event Rate Comparison Chart Data
bull Observed Expected Chart Data
bull Descriptive Statistics ndash Field stats
bull Covariate Matched Statistics ndash Field stats Prior After Unmatched
bull Logistic Regression Formula Data
bull Outcomes Data
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
36
CathPCI DELTA Pilot Project Example
Configuration - Susan Robbins
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
37
Steps to Configure DELTA Mynx VCD Pilot Analyses
1 Evaluate Protocol required fields including devices and outcomes
2 Evaluate Protocol method parameters
3 Prepare source database tables define DELTA connections
4 Select Atomic fields assign classkind and process Acquistion
5 Create virtual fields assign classkind
6 Review Descriptive Stats Impute and enter lsquoMissingrsquo
7 Process All fields
8 Create and Configure Studies run Analyses
CathPCI DELTA Pilot
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
bull Outcomes In-hospital significant vascular and bleeding
bull Primary Safety Any Vascular Complication ndash composite of access site bleeding requiring treatment large hematoma (gt6cm) retroperitoneal hemorrhage vascular comp requiring intervention
bull Secondary Safety Access site bleeding alone requirement for post-procedural blood transfusion
bull Pre-specified Analyses per written SAP
bull High risk populations Women diabetics agege70 years
bull Alternative risk adjustment Multivariate logistic risk adjustment
bull Falsification Hypothesis Thrombectomy catheter adverse events (anticipated no difference expected between devices)
bull Interim Reviews pre-specified (SAP) for review by oversight committee after 12 months and at study completion
CathPCI DELTA Pilot
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
39
Atomic and Virtual Fields ndash Outcome example
bull Any Vascular Complication defined with PCI Registry Fields
PostOtherVascComplication ndash 8035
PostBleedHematoma gt5-10cm gt 20cm ndash 8060
PostRetroBleed ndash 8070
PostBleedAccessSite ndash 8055
bull DELTA virtual field formula from Atomic Dichotomous fields
(PostOtherVascComp]=1) OR (PostBleedHematoma=1) OR (PostRetroBleed=1) OR (PostBleedAccessSite=1)
CathPCI DELTA Pilot
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
40
Partial List ndash Field FormulasField Description mysql_syntax
Calculated BMI = Weight(kg)(Height(m)Height (m)) (Weight(HeightHeight))
Is BMI gt=21 and lt25 IF(t_BM1gt=210 AND t_BM1lt250 10)
Is BMI gt=30 IF(t_BMIgt=300 1 0)
Is BMI lt 210 IF(t_BMIgt210 10)
Is Agegt 70 IF(Age gt=70 1 0)
CAD Presentation (5000) = STEM or Equivalent IF(CADPresentation_TEXT=STEMI or equivalent 1 0)
PCI Status 7020 IF(PCIStatus_TEXT=Emergency 10)
IIF Stemi OR NonSTEMI IF(t_lsPresentationNSTEMI= 1 OR t_lsPresentationSTEMI= 110)
1 Immediate PCI for STEM IF(PCindication=1 10)
MAX pre-procedure Lesion Severity Max(StenosisPriorTreat)
Minimal PreProcedure TIMI Flow Rate min(PreProcTIMI)
IIF (CIRCStenosisgt50 10) IF(CIRCStenosis gt=50 1 0)
IIF (MidLADDz= 1 or ProxLADDz= 110) IF(t_MidLAD_Dz= 1 OR t_HasProxladDz= 110)
IIF (NumVessei_Dzgt33NumVessei_Dz]) IF(f_NumVessel_Dz gt33f_NumVessei_Dz)
Is any thrombectomy device class = Aspiration IF(ICDeviceClass=AspirationTF)
Is any Vascular Closure Device Class= Active but non Mynx IF(ClosureDevClass=Active AND t_lsDEVFamily_Mynxlt=gt 110)
Is any Vascular Closure Device Class= Active IF(ClosureDevClass=ActiveT F)
Is any Closure Device Family Mynx IF(ClosureDevFamily=MynxTF)
Is any MedUsed = Aspirin (any) IF(MedUsed=AspirinTF)
Has Any ln-Stent Thrombosis IF(InThrombosis= 1TF)
Has any previously treated lesion IF(PrevTreatedlesion= 1TF)
Presence of any graft lesion IF(LesionGraft= 1 2 3TF)
MACE= 8000 PostPCI_MI8015 PostPCI_CVA 9000 CABG Death IF(CABG=1 OR PostCVA=1 OR PostMI=1 OR t_lsDeath=110)
CathPCI DELTA Pilot
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
CathPCI DELTA Pilot
bull Propensity Match Analysis 11 match of patients treated with Mynx as compared to patients treated with alternative active VCD within 6 months of Mynx case
bull Non-parsimonious propensity model (likelihood of receiving Mynx) fixed caliper width=001 greedy match
bull Quarterly analysis with adjustment for multiple comparisons (OrsquoBrien-Fleming) for each endpoint
bull Alert if 95 CI of differences between proportions (Wilson method) do not cross zero
bull Missing Data Simple imputation (unknown ldquomissingnessrdquo in advance)
bull Post-Hoc Analyses On basis of interim and final reviews Scientific Committee recommended sensitivity analyses and analysis of independent validation dataset (10113-92015)
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
42
Study Method Parameters
CathPCI DELTA Pilot
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
43
Study Filters and Subgroups
CathPCI DELTA Pilot
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
44
Study Results Dashboard
CathPCI DELTA Pilot
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
45Source Resnic FS et al
CathPCI DELTA Pilot
Study Result Chart
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
46
Study Subgroup Results Dashboard
CathPCI DELTA Pilot
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
47
Study Subgroup Results Chart
CathPCI DELTA Pilot
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
48
BREAK
(10 minutes)
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
49
DELTA User Support
Susan Robbins
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
50
DELTA Resources
bull Live Demo Site
httpsCERIdemolaheyorgDELTA3
bull Download site
httpsbitbucketorgCERI-Laheydelta3downloads
bull On-line documentation
User Manual httpsceri-laheyatlassiannetwikispacesDUMoverview
Statistical Methods httpsceri-laheyatlassiannetwikispacesDSMSoverview
Questions
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
51
DELTA Interactive DEMO
and Questions
Fred Resnic Henry Ssemaganda
Susan Robbins
httpsCERIdemolaheyorgDELTA3
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
Learning Objectives
bull Understand basic fundamentals of DELTA
bull Menus features and functions
bull Understand Data Model
bull Atomic and virtual fields missing substitutions data acquisition and extraction descriptive statistics and flat table
bull Understand Study Configuration
bull Basic Propensity Analysis parameters
bull Understand Results Visualization
bull Dashboard and ChartsTables
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
53
1 Model review
2 Atomic fields assign classkind
3 Create virtual fields assign classkind
4 Create and Configure Study
5 Review Demo Results
You can try cloning a model editing it and processinghellip
And try cloning a study assign new model change a parameter and submithellipwersquoll see how you do
DELTA Demo - Topics
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
54
DELTA Demo ndash Login
bull Login with UsernamePassword on card
bull Brief intro to Projects Feedback Stat Program User Dropdown buttons
bull DELTA Menu
Select ldquoData Modelsrdquo
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
55
DELTA Demo ndash Models
Sample Model Grid
bull Review Step 1 Manage (Add Edit Clone Delete)
bull Step 2 Build Model Structure
Select (ldquoDemo Modelrdquo) and click Step 2
bull Model Builder
bull Review Step 1A 1B 1C (SourceAtomicRelationships)
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
56
DELTA Demo ndash Model Source Data
bull Step 1A ndash Select well structured dataset
Normalized with Primary Key
Can manage 1many with Step 1C lsquoRelationshipsrsquo
Sample Data is a Flat Table in database
bull Step 1B ndash Atomic Field Selection
(click +) to display fields check mark indicates those added to the model
Note Topic detail not covered today
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
57
DELTA Demo ndash Model Field Grid
bull Atomic ndash from Source(Type read from Source ndash will prompt if not
valid in DELTA)
bull Virtual ndash Primary are based on Source Column
bull Virtual ndash Secondary are based on Primary Virtual (stacked)
bull Missing ndash enter formulavalue on Atomic AND flag in ldquoMissingrdquo column
(Verify formulas before processing)
bull Field Characteristics
bull ClassKind relate to USE of data by DELTA
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
58
DELTA Demo ndash Model Data
Sample Model Grid
bull Review Step 2 and 3 Acquisition Virtual Fields Extraction
ldquoSTATUS Processing of Descriptive Stats finishedrdquo
Select Step 3 Data Extraction gt All Statistics
bull Review Statistics table
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
59
DELTA Demo ndash Study Configuration
bull Review Step 1 Add Study
bull Review Step 2 Edit Study
bull Review Study Grid fields
Select (ldquoPA Demo Study 2rdquo) and click ldquoStep 2rdquo
Then ldquoEdit parametersrdquo
Select ldquoStudiesrdquo
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
60
Note Can schedule to rerun without intervention
bull Study Grid Fields
DELTA Demo ndash Study Configuration
Parameters
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
61
DELTA Demo ndash Study Configuration
bull Sample Study PA Method Parameters
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
62
DELTA Demo ndash Study Results
bull Sample Result (PA Demo Study 2 P1)
bull Review lsquoResult Dashboardrsquo
bull Review lsquoResult Chartsrsquo
Select (ldquoPA Demo Study 2 P1rdquo) and click ldquoDashboardrdquo andor ldquoResult Chartsrdquo
Select ldquoResultsrdquo
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
Thank You
Lahey Clinic Medical Center
Susan Robbins BSHenry Ssemaganda MD MPH
Marek Mizeracki MSc
Vanderbilt University VAMC
Michael Matheny MD MSc MPHDax Westerman MSc
For more information please contact Frederic S Resnic MD MScLahey Hospital and Medical Center41 Mall RoadBurlington MA 01805781-744-2778
fredericresniclaheyorg
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
64
DELTA Administration Overview
bull Organizations
bull Users
bull Permissions and Roles
bull ProjectsGroups
bull Database connections
bull Statistical Method Interface
65
DELTA Administration
65
DELTA Administration