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Roberto Marabini
Ontology in3DEM
Images from: XXVI VAKKI SYMPOSIUM – 10-11-12 February 2006 - Vaasa, Finland
The Promise
“helpful to communicate information across people
and systems…”
Store:
1. Kind of data used as Input/Output
2. Actual values
Proposal I: Relational Data Base, one table per program
Normalize
UID InputImage sampling method OutImage
1 Img0001.mrc 5.3 Background ImgNor0001.mrc
2 Img0002.mrc 5.3 Background ImgNor0002.mrc
3 Img0003.mrc 5.3 Background ImgNor0003.mrc
UID InputImage sampling method OutImage
1 Img0001.mrc 5.3 Background ImgNor0001.mrc
2 Img0002.mrc 5.3 Background ImgNor0002.mrc
3 Img0003.mrc 5.3 Background ImgNor0003.mrc
UID InputImage sampling method OutImage
1 Img0001.mrc 5.3 Background ImgNor0001.mrc
2 Img0002.mrc 5.3 Background ImgNor0002.mrc
3 Img0003.mrc 5.3 Background ImgNor0003.mrc
UID InputImage sampling method OutImage
1 Img0001.mrc 5.3 Background ImgNor0001.mrc
2 Img0002.mrc 5.3 Background ImgNor0002.mrc
3 Img0003.mrc 5.3 Background ImgNor0003.mrc
UID InputImage sampling method OutImage
1 Img0001.mrc 5.3 Background ImgNor0001.mrc
2 Img0002.mrc 5.3 Background ImgNor0002.mrc
3 Img0003.mrc 5.3 Background ImgNor0003.mrc
UID InputImage sampling method OutImage
1 Img0001.mrc 5.3 Background ImgNor0001.mrc
2 Img0002.mrc 5.3 Background ImgNor0002.mrc
3 Img0003.mrc 5.3 Background ImgNor0003.mrc
UID InputImage sampling method OutImage
1 Img0001.mrc 5.3 Background ImgNor0001.mrc
2 Img0001.mrc 5.3 Background ImgNor0001_bis.mrc
3 Img0003.mrc 7.3 Background ImgNor0003.mrc
Proposal I: Relational Data Base, one table per program
NormalizeFilter…
imagesamplingRate…
Normalize, InputFile, imageNormalize, OutFile, imageNormalize, Sampling, samplingRate…
Run_001Run_002…
InputFile ,Img0001.mrc, Run_001Sampling, 5.6, run_001…
requiredisjoint…
Method, require, radius
…
Radius is required iif method=background…
hasCompulsoryParameterisa…
programnormalize…
normalize, program, isa…
Subject Verb predicate
Normalize Isa Program
InputImage hasType image
Normalize hascompulsoryAtribute InputImage
…. …. ….
Technology• Persistence layer: EMPIRE (JPA for RDF) -> JENA –
SPARQL. https://github.com/mhgrove/Empire• DataBase: TDB http
://incubator.apache.org/jena/documentation/tdb/• Concurrency: Fusseki http
://incubator.apache.org/jena/documentation/serving_data/index.html
• Conventions web (test)
Copyright © 2005 Univ. of Manchester23
Coche
Automobile
Voiture
Araba
The Car
Copyright © 2005 Univ. of Manchester24
Coche
Automobile
Voiture
Araba
The Car
(A little bit of ontologies)
Person Country
Class (concept)
Animal
Individual (instance)
Belgium
Paraguay
China
Latvia
Elvis
Hai
Holger
Kylie
S.Claus
Rudolph
Flipper arrow = relationshiplabel = Property
lives_in
lives_in
lives_in
has_pet
has_pet
has_
pet
Copyright © 2005 Univ. of Manchester26
Pizza
MargheritaPizza
VegetarianPizza
Spicy BeefPizza
PizzaTopping
Vegetabletopping
Tomatotopping
Mozzarellatopping
Cheesetopping
Pizza_base
Deepdish base
Regularbase
A simple ontology: Pizzas
