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Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00107 E2
TACG
TGACAA
CCTCAG
CGAT
GACT
TGCA
GTAC
ATCGT
GTCTGA
GTAC M00793 YY1
ATG
AGC
TC
CGA
CGT
AGTC
CAGT
ACGT
ACTG BG 0.415 0.584 0.586
M00445 Xvent-1ACG
TCG
ATCG
AGTC
GAT
GATC
TCTT
GGCT
TGC
GTC M00649 MAZ
TAGGT
GCGC
AGCAGG FG 0.416 0.544 0.624
M00981 CREBATFTCAG
G
TGG
AA
TCGG
ACT
GTAC
CTGA M00992 FOXP3 A
GTA
CGA
CAG
AGT
TG
CTTA
TG
AT
CGT
AGTCT
ATG
GA
GTC BG 0.417 0.520 0.646
M00084 MZF1CATG
CATG
CTAG
ACGT
TG
GA
ATG
TG
ACG
ATG
TACG
GTA
TGCA M00141 Lyf-1
CGT
CT
ACT
AG
AG
CGG
ATAGG
A FG 0.419 0.598 0.564M00076 GATA-2
ATCG
TACG
TCAG
CG
T
ACTCTGA
ATCG
ATGC
ACTG M00626 RFX1 A
CAG
AT
CT
GA
AC
GCT
CTA
TG
AGG
CGTA
CAA
C BG 0.421 0.676 0.482
Table 1: Five TRANSFAC motif pairs with lowest classification error in Human AdiposeTissue.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00528 PPAR
CGTA
CGTA
ATGC
GACT
CTGAGA
GACTG
GATC
GA
CGTA
CGTA
AGT
GCGT
TGC
GTA M00931 Sp-1
CATG
CAGGG
G
TAC
C
AT
GTG
TCAG
TACG
AGTC FG 0.370 0.808 0.452
M00423 FOXJ2CGA
ACTA
CTAC
TAACT
GA
CGT
CT
GT
AGT
ACGT M00716 ZF5
TAG
TACG
CAG
TAGC
CTAG
AGTC
ACTGA
G FG 0.378 0.638 0.606M00482 PITX2
CAT
CAGTTC
AGA
GTCA
GC
AC
CGTA
CGA M00800 AP-2
ACG
TGCCT
AGC
TGC
ATC
CAG
CAG
CG
GCC
ATG
TAG
CGTA
CAG
TACG
ATCG FG 0.378 0.658 0.586
M00045 E4BP4GTAC
CAG
ATG
TACT
A
GTAAGTC
CTAG M00081 Evi-1
TAG
AG
CTA
ACT
TAG
AT
AG
TA
ACT
TA
TGA
AG
TA
AT
CTA BG 0.396 0.478 0.730
M00471 TBPACGT
GTATAAC
TGA
ACGT
CGTA M00510 Lhx3
TGCA
CGTA
GTTAAC
TA
GCT
C
TA
CGTA BG 0.398 0.346 0.858
Table 2: Five TRANSFAC motif pairs with lowest classification error in Mouse AdiposeTissue.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00042 Sox-5
GACT
GCAT
GTA
GA
TCAC
ATCTGA
ATGC M01010 HMGIY
GCTA
TGAC
CAGT
CATG
ATGC
GCTA
GTA
GAT
CT
GAT
AGCT
GACT
ACT
CATG
CGTA BG 0.400 0.636 0.564
M00255 GCCGTA
CTAG
C
ATG
AGGGT
AC
AG
TG
TAG
CATG
GTC
AGCT
CATG M00469 AP-2alpha GCCA
GTC
ATCG
TCAG
TCAG
TCAG
ATCG FG 0.407 0.514 0.672
M00351 GATA-3CTGA
CGTA
CTAGATT
AC
AT
GAT
GCTA M00463 POU3F2
TCA
CTA
GACATATA
TTA
ATTA
TCAT BG 0.407 0.570 0.616
M00291 Freac-3TACG
ATCG
GACT
TCGA
GCTAGTAAAC
TACTA
GTA
TGC
CGA M00499 STAT5A
TAGC
GCTA
AGCTTTA
CA
GCT
CGAT BG 0.409 0.460 0.722
M00729 Cdx-2CA
CGAT
CTA
ACTG
AGT
CT
ATA
TACTA
GT
AG
TC
ATC M00734 CIZ C
GAAAAATCGA
AGCT
GTAC BG 0.411 0.766 0.412
Table 3: Five TRANSFAC motif pairs with lowest classification error in Human AdrenalGland.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00144 BSAP
CAG
GA
TAC
ACG
GAT
AG
GTA
ACGT
GAT
GCT
GTC
CT
ACTG
GA
GAGCGG
TAG
TACA
CG
GA
CT
CGTA
ACG
TAC M00803 E2F
CG
CGCGG
CACTG FG 0.344 0.790 0.522
M00189 AP-2GAC
ATG
TCCT
CACG
AGC
TGAC
ACTG
ACG
GAC
ATCG M00322 c-Myc:Max
TACG
TGCCT
GAT
CAG
ATCGT
AGC
ATCG FG 0.353 0.754 0.540
M00162 Oct-1AGC
GTA
CGAT
CTA
CTATG
TGTA
AGCATT
AG
CT
CGAT M00802 Pit-1
GCTA
TCA
AT
CGTCC
TA
AT
CTGA
CTA
GAT
CGT
CGA
CAT
GCTA
GATC
GTCA
GATC
CTA BG 0.382 0.326 0.910
M00616 AFP1 AAT
ATAAT
CATG
AGCAT
C M00725 HP1 ACA
AT
GTA
AGT
ATT
CGTA
CA
ACAG BG 0.384 0.526 0.706
M00003 v-MybTCGA
TCGA
GACT
TAAA
CCTG
ACTGG
TCA
GCTA M00744 POU1F1
GTATGG
CTA
TATG
TAT
AGTA
CAT BG 0.393 0.478 0.736
Table 4: Five TRANSFAC motif pairs with lowest classification error in Mouse AdrenalGland.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00087 Ik-2
TACG
CGAT
ACGT
ACT
AGGGAG
CTA
GCAT
TCGA
TGAC M00290 Freac-2
AGTC
GTCA
GCTA
TCGA
ATGC
AGTAAAT
CAGCTA
CGAT
TGAC
TAGC BG 0.401 0.704 0.494
M00141 Lyf-1CGT
CT
ACT
AG
AG
CGG
ATAGG
A M00205 GRCTG
TG
GCT
TAT
CCA
TCGA
CGAT
AGC
ATGTG
CTCTC
TG BG 0.407 0.702 0.484
M00196 Sp1TCAG
TCAG
CATG
AGG
C
GTAC
A
T
CG
TG
CTAG
TCAG
AGTC
ATGC M00982 KROX
AGTC
AGTC
ATC
TAGCCT
CTACCC
TAG
GATC
GATC
ATGC
TAGC FG 0.409 0.490 0.692
M00464 POU3F2ATTATGC
TTAAT M00808 PaxGC
CAT
ATG
ACTG
CTGA
TGA
TGAC
AT
TAC
GCTA
TAC BG 0.410 0.676 0.504
M00033 p300CAGT
GTAC
TCGA
CTAG
AG
CATG
CGTA
CTG
AT
CATG
GCTA
ACTG
GACT
ATCG M00456 FAC1
TCGA
GTAC
TGAC
TGAC
CGTA
TAC
CGA
CTA
TGAC
GTCA
GTAC
TCGA
GACT
CGTA BG 0.411 0.744 0.434
Table 5: Five TRANSFAC motif pairs with lowest classification error in Human Amygdala.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00025 Elk-1
AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC M00478 Cdc5
CG
CGTA
AGT
AGT
ATAC
TA
ATC
TGA
ACT
CGA
GTA BG 0.393 0.538 0.676
M00239 v-ErbAACG
GCTA
ACGT
GT
CAG
GAGGTCAA
TC
ATCG
AGC
AGTC
GTCA M00482 PITX2
CAT
CAGTTC
AGA
GTCA
GC
AC
CGTA
CGA BG 0.402 0.618 0.578
M00330 MajorTAG
AGC
GGTAA
GAG
GTC
CA
ACG
GA
AG
AG
GTC
GA
TG
TCG
GATC
CTAG
TAG M00644 LBP-1 CC
GAGCTT
GGC FG 0.423 0.396 0.758
M00073 deltaEF1GCAT
GATC
AGCT
GTC
TAC
G
CTCATG
CTGA
TCGA M00720 CAC-binding
AGG
ATGGC
GATGGC
G FG 0.424 0.472 0.680M00378 Pax-4
TCGA
CGTA
AGCT
GATC
GATC
ATC
AGC
TA
AGC
TAC
ATGC
TCG M00626 RFX1 A
CAG
ATCT
GA
AC
GCT
CTAT
GAGG
CGTA
CAA
C FG 0.425 0.404 0.746
Table 6: Five TRANSFAC motif pairs with lowest classification error in Mouse Amygdala.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00394 Msx-1
GATC
AGTC
ATCG
ACGT
CGTA
CTA
CGAT
CGT
ACTG M00940 E2F-1
CATG
ACGT
CGAT
ACTG
CCGCGG
CTGC BG 0.390 0.602 0.618
M00224 STAT1ACTG
CATG
AGCT
TACG
TCGA
GCATTTG
TA
CCCGGA
GAACTGA
ACGT
CAG
CTAG
T
ACG
CTAG M01002 DEAF1
TCAG
TGAC
CTAG
CTAG
TCAG
ACT
AGTCC
GATG
ACTG
CGAT
TCGA
CAGTC
TAGTT
CTCC
GCATG
CTAG
CGA
CAGT
ACTG
GACT BG 0.397 0.574 0.632
M00419 MEIS1GATC
GCTA
TCAG
AGTG
GTACAA
TCG
CTAG
CAGT
ATGC M00965 LXR,
GCT
TAG
GCTA
TAC
ATC
CGT
AGTC
AGCT
GTCA
ATGC
ACGT
TAG
GTCA
GAC
AGTC
AGTC
GATC FG 0.408 0.522 0.662
M00193 NF-1GACT
GATC
ACTTGG
G
AC
GCTA
TCGA
TACG
GTCA
CTGA
ACTG
GATC
AGTC
GCTA
CTGA
CTGA M00495 Bach1
TCGA
AGTC
ATCG
CGATGAGTCAA
GCT
TACG
TAGC
AGCT FG 0.411 0.706 0.472
M00976 AHRHIFACGT
AG
A
CGTGGTAC
ATCG
TACG M01014 SOX
ATC
GTCA
TTTGAT
GT
CTA
AGCT
ACG
CGTA BG 0.413 0.484 0.690
Table 7: Five TRANSFAC motif pairs with lowest classification error in Human BoneMarrow.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00803 E2F
CG
CGCGG
CACTG M00916 CREB
TACG
CATG
CGAT
ACGT
TGAC
CAGTG
CCA
ACTG
AGTC
CATG
ATCG BG 0.373 0.690 0.564
M00322 c-Myc:MaxTACG
TGCCT
GAT
CAG
ATCGT
AGC
ATCG M00652 Nrf-1 CA
GCTGATGCGCG
A BG 0.386 0.684 0.544M00332 Whn
CGTA
TCGA
AGTC
TACGACGCA
GCT
CGAT
ACGT M00979 PAX6
GAC
AGTGG
TA
GC
AGC
CTT
GTG
CGTA
GA
ATGC
ACGT
GTAC BG 0.398 0.716 0.488
M00109 C/EBPbetaCTGA
CATG
TCGA
AT
AGT
TAG
CAGTGT
AC
CAAC
AGT
TACG
ACGT M00465 POU6F1
CAG
TAC
TA
AT
CTA
CGAATTA
TAGT FG 0.407 0.450 0.736
M00203 GATA-XGTAGAC
TATCGA
CTAG
CATG
TGAC
GTAC
GCAT M00258 ISRE
AGTC
GAGTTTCC
GTA
AGTC
ATTC
TTC
AGTC
ATGC FG 0.411 0.444 0.734
Table 8: Five TRANSFAC motif pairs with lowest classification error in Mouse BoneMarrow.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00017 ATF
GTAC
ACGT
TACGTGACG
GCAT
GTAC
CGTA
TACG
AGTC
AGTC M00793 YY1
ATG
AGC
TC
CGA
CGT
AGTC
CAGT
ACGT
ACTG FG 0.403 0.416 0.778
M00431 E2F-1AGCT
CGT
ATG
CCG
GC
CG
TGC M00480 LUN-1 TCCCAGA
GCTT
AAC
CTTA
CT
AGGGA FG 0.403 0.602 0.592
M00032 c-Ets-1(p54)CGTA
AC
TACGGAC
TA
CAG
ACT
TCGA M00423 FOXJ2
CGA
ACT
AC
TAC
TAACT
GA
CGT
CT
GT
AGT
ACGT FG 0.406 0.328 0.860
M00257 RREB-1ACCA
CCACACAT
ACA
CCA
AC
ACA
CGTAC M00993 TAL1
AGTCCAC
GTCTGA
GTC
CT BG 0.425 0.472 0.678
M00147 HSF2TCGAGC
GA
CGTA
ACGT
TCAG
CGAT
GATCA
CTG M00175 AP-4
AGC
AGTCAGCA
GT
CG
ACTG
ACGT BG 0.427 0.446 0.700
Table 9: Five TRANSFAC motif pairs with lowest classification error in Human CD4TCells.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00025 Elk-1
AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC M00273 R
AGCT
ACGT
C
GA
CTG
T
GACCC
TAG
AGTC
ATCG
CGTA
CTGA
CGAT
A
GTC
C
AGA
CT
A
T
GT
GCTG
A
GTC
GTCA FG 0.388 0.524 0.700
M00316 ImperfectCAG
GAT
AGA
GAT
CG
CAG
AGTCA
GTC
CGTAT
CTAG
ACT
CTGT
CTAG
ATTCA
TC
TCAT
GAC
CA
ATC
ACGT M00803 E2F
CG
CGCGG
CACTG FG 0.390 0.700 0.520
M00256 NRSFACGT
GCT
T
CAGT
CACCTGA
GTAC
A
GGCTA
GCAG
TAC
TCAG
ATGC
TAC M00799 Myc CT
ACTCG
GT
ATGT
CG FG 0.402 0.652 0.544
M00042 Sox-5GACT
GCAT
GTA
GA
T
CACATC
TGA
ATGC M00770 C/EBP
CTAG
CTGA
TCGA
GCAT
ACGT
CGAT
CATGGG
ATC
G
TCA
GAG
CTA BG 0.411 0.360 0.818
M00269 XFD-3 ATACTG
GTAGTC
AAATCATAC
TATCA
GTA M01004 Helios
CGAT
GCAT
CGTA
TAGGT
AGCTA
CTA
CGTA
GTCA BG 0.413 0.486 0.688
Table 10: Five TRANSFAC motif pairs with lowest classification error in Mouse CD4TCells.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00691 ATF-1 CG
CT
AGTC
CGT
CGAA
CGAT
AC
TA M00743 c-Ets-1
GC
GCAGGAT
AGTC FG 0.384 0.500 0.732
M00695 ETFTGA
GC
TGGA
CCGG M00793 YY1
ATG
AGC
TC
CGA
CGT
AGTC
CAGT
ACGT
ACTG FG 0.399 0.512 0.690
M00083 MZF1CTGA
CTAG
ACGTGA
TG
TGGC
GA M00272 p53
CGTA
CTAG
C
GA
TC
CGTA
GATGC
TTC
GACT BG 0.422 0.424 0.732
M00001 MyoDACG
CAG
GTACAT
GCGTGC
GT
CT
ATG M00720 CAC-binding
AGG
ATGGC
GATGGC
G BG 0.423 0.620 0.534M00330 Major
TAG
AGC
GGTAA
GAG
GTC
CA
ACG
GA
AG
AG
GTC
GA
TG
TCG
GATC
CTAG
TAG M00721 CACCC-binding
TCG
ACAGT
GTC
GAC
AGTC
ACGT
ATGGGG
TGAGT
AG
CG BG 0.425 0.502 0.648
Table 11: Five TRANSFAC motif pairs with lowest classification error in Human CD8TCells.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00025 Elk-1
AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC M00317 Poly
GTAC
CATG
GTAC
TCGTGA
GT
CTG
CTG
AT
AGTC
ACT
TGAC
GTAG
CT
AGTC FG 0.413 0.456 0.718
M00176 AP-4AGC
GATCAGCG
TCG
CTG
ACGT M00935 NF-AT
ATCG
GCATG
A
GAGA
CTA
GTCA
GCAT
AGCT BG 0.423 0.526 0.628
M00761 p53TCGA
AGG
AT
AGC
CGTA
CGTA
AGG
ACT
ATGC
AGTC M00810 SRF
ATGC
ACC
CTGA
CAT
TGA
CGAT
GTA
GTA
A
GA
GTGCA
TACG
TGCA
ACGT
CTAG
ACTG
ACGT FG 0.424 0.500 0.652
M00316 ImperfectCAG
GAT
AGA
GAT
CG
CAG
AGTCA
GTC
CGTAT
CTAG
ACT
CTGT
CTAG
ATTCA
TC
TCAT
GAC
CA
ATC
ACGT M00800 AP-2
ACG
TGCCT
AGC
TGC
ATC
CAG
CAG
CG
GCC
ATG
TAG
CGTA
CAG
TACG
ATCG FG 0.424 0.612 0.540
M00481 ARCTAG
T
GCGAT
CTAC
CTGA
ACTG
ACTG
CTAG
ACTG
AGTC
AGT
AC
AGCT M01009 HES1
CTGA
TCGA
ACG
TCG
ACG
TGTCGTGT
CG
ATGC
AGCT
GTAC
CTAG FG 0.424 0.670 0.482
Table 12: Five TRANSFAC motif pairs with lowest classification error in Mouse CD8TCells.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00025 Elk-1
AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC M00102 CDP
CGAT
GCTA
CAGTATA
TCGATG
ACT
C
T
GA
CAGT
G
ACT
CGAT
GCAT BG 0.388 0.492 0.732
M00526 GCNFTGAC
ACGT
TAGC
CTGA
GTA
A
GCGTTCAC
ATG
A
CGT
A
CGT
TC
CGTAG
TAC
AGTC M00742 HFH-4
GCTA
AT
ATG
GACT
AG
A
TTTAG
CT
AT
AT
GTA BG 0.390 0.686 0.534
M00467 Roaz GCACCCTATAGGGTC
GTAC M00720 CAC-binding
AGG
ATGGC
GATGGC
G FG 0.397 0.552 0.654M00128 GATA-1
CTGA
ACGT
TGAC
CGTAGATAC
TGA
TCAG
CTAG
TCAG
ATCG M00432 TTF1
TA
AGC
AT
GCAAGA
CT
TAG
GT BG 0.400 0.710 0.490
M00423 FOXJ2CGA
ACT
AC
TAC
TAACT
GA
CGT
CT
GT
AGT
ACGT M00478 Cdc5
CG
CGTA
AGT
AGT
ATAC
TA
ATC
TGA
ACT
CGA
GTA BG 0.402 0.640 0.556
Table 13: Five TRANSFAC motif pairs with lowest classification error in Human Cerebellum.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00058 HEN1
CTGA
CTAG
CATG
ATG
C
T
AGT
ACG
GAC
ACTGCAA
CG
A
T
GCTGA
GTC
CATG
AGCT
AGTC
GTAC
GATC
GATC
CGAT M00933 Sp-1
AGTC
AGTC
AC
TGAC
CATGCCT
CGTAC
AGTC FG 0.395 0.482 0.728
M00716 ZF5TAG
TACG
CAG
TAGC
CTAG
AGTC
ACTGA
G M00993 TAL1AGTCCAC
GTCTGA
GTC
CT FG 0.398 0.654 0.550
M00152 SRFCGTA
AT
AT
GTACCCT
AATATT
AATGGG
CAT
TGCA
CGTA
ACGT M00258 ISRE
AGTC
GAGTTTCC
GTA
AGTC
ATTC
TTC
AGTC
ATGC BG 0.401 0.716 0.482
M00146 HSF1CTGAG
CGTA
CGTA
AGCT
CTAG
CAGT
CAGTCA
CTG M00478 Cdc5
CG
CGTA
AGT
AGT
ATAC
TA
ATC
TGA
ACT
CGA
GTA BG 0.403 0.534 0.660
M00162 Oct-1AGC
GTA
CGAT
CTA
CTATG
TGTA
AGCATT
AG
CT
CGAT M00216 TATA
GACT
TGC
A
CT
TATAT
AAACTAG BG 0.406 0.556 0.632
Table 14: Five TRANSFAC motif pairs with lowest classification error in Mouse Cerebellum.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00651 NF-muE1
GCC
GGCCATTC
GT M00695 ETF
TGA
GC
TGGA
CCGG BG 0.332 0.728 0.608
M00539 ArntTAGC
TGCA
CTGA
GTCA
CATG
TCAG
AGTCACGTGT
CA
AGTC
GATC
ACGT
GACT
ACGT
ATCG M00803 E2F
CG
CGCGG
CACTG BG 0.347 0.832 0.474
M00128 GATA-1CTGA
ACGT
TGAC
CGTAGATAC
TGA
TCAG
CTAG
TCAG
ATCG M00639 HNF-6
CTA
CGTA
GTAAG
ATCCAATT
CGA
CGTA FG 0.368 0.476 0.788
M00136 Oct-1TCGA
CGAT
ACTG
TGCA
CGTA
C
ATAC
TC
TG
T
CCTGA
GCAT
CAGT
GACT
GCTA M00630 FOXM1 AA
GCTA
AT
AGT
CG
TA
TCGT FG 0.372 0.558 0.698
M00250 Gfi-1CGTA
TGAC
GTCA
TCGA
TCGA
GTCA
GACT
TGCAAATC
G
CTA
TAGC
GTA
ACTG
AGTC
GCTA
ACGT
CTGA
AGCT
ATCG
GTAC
AGTC M01017 PBX1
TGCA
AGTC
TGCA
ACT
AC
TCA
CTGA
GCAT
GTC
CTGA
CGAT
CTAG FG 0.373 0.468 0.786
Table 15: Five TRANSFAC motif pairs with lowest classification error in Human DorsalRootGanglia.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00469 AP-2alpha GCCA
GTC
ATCG
TCAG
TCAG
TCAG
ATCG M00927 AP-4
CAG
GTAC
GC
CTA
CG
AGCTGA
TC FG 0.373 0.622 0.632
M00105 CDPAGC
GCA
AGCG
AC
TCGA
GA
ACGT
TCGA
GACT
TCAG
CTATT
CGG M00716 ZF5
TAG
TACG
CAG
TAGC
CTAG
AGTC
ACTGA
G FG 0.383 0.666 0.568M00338 ATF
ACTGTGACGA
TGTAC
TA
CTGA
GATC
ATCG M00510 Lhx3
TGCA
CGTA
GTTAAC
TA
GCT
C
TA
CGTA BG 0.395 0.670 0.540
M00466 HIF-1GTAC
CAG
ACGT
GACGTGA
GC
TACG
CTG
CGT M00644 LBP-1 CC
GAGCTT
GGC FG 0.397 0.608 0.598
M00231 MEF-2AGCT
ATGC
ATGC
ATCG
CATG
CGAT
CATG
AGTC
ACTT
ATA
TA
TAT
ATAAG
TGAC
GCTA
GATC
GTAC
GACT M00334 D-Type
GACCATTAAAT
C BG 0.401 0.484 0.714
Table 16: Five TRANSFAC motif pairs with lowest classification error in Mouse DorsalRootGanglia.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00241 Nkx2-5
GCA
TTAATAT
ACG M00424 NKX6-1
GACT
CAT
ACT
GTTAATA
GT
ATG
CTAG
CAT
CGAT BG 0.375 0.698 0.552
M00729 Cdx-2CA
CGAT
CTA
ACTG
AGT
CT
ATA
TACTA
GT
AG
TC
ATC M00744 POU1F1
GTATGG
CTA
TATG
TAT
AGTA
CAT BG 0.375 0.706 0.544
M00042 Sox-5GACT
GCAT
GTA
GA
TCAC
ATCTGA
ATGC M00510 Lhx3
T
GCA
CGTA
GTTAAC
TAG
CT
CTA
CGTA BG 0.379 0.672 0.570
M00133 Tst-1ACTG
CTAG
CTG
ACG
TAT
ATAT
CTA
ACG
CGA
ACG
CGT
AGT
ATCG M00248 Oct-1
CGAT
ATCG
ACTATT
GTGC
ATAATT BG 0.380 0.540 0.700
M00311 ATATATCGTAC
TATTAAGT
C M00809 FOXCTG
GTA
GCAT
GTA
GTAGT
GTG
ACT
CT
GAT
GTA BG 0.383 0.562 0.672
Table 17: Five TRANSFAC motif pairs with lowest classification error in Human Heart.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00157 RORalpha2
CGTA
GATATAA
TCGTG
AGGTCATCGA M00311 ATATA
TCGTAC
TATTAAGT
C FG 0.417 0.654 0.512M00424 NKX6-1
GACT
CAT
ACT
GTTAATA
GT
ATG
CTAG
CAT
CGAT M00437 CHX10
CATG
TACG
ATGC
CTAAA
TTCTA
ACG
GAC
ACTG
GTAC
CGTA FG 0.418 0.456 0.708
M00448 Zic1ACGT
TCAG
ACTG
ACTG
ACGT
ATCG
ACG
AGCT
TGAC M00743 c-Ets-1
GC
GCAGGAT
AGTC BG 0.419 0.520 0.642
M00489 Nkx6-2CTAG
CAT
TGA
GTATAAATA
GT
CGTA
ACGT
ACGT M00985 Stra13
ATGC
AGCT
TACG
CGTCAT
CGTGTCAT
GC
AGTC
CGTA FG 0.419 0.574 0.588
M00766 LXRCTGC
AACCC
TG
ATCG
GATC
CGTA
ACTGTG
AAACCC M01004 Helios
CGAT
GCAT
CGTA
TAGGT
AGCTA
CTA
CGTA
GTCA FG 0.424 0.704 0.448
Table 18: Five TRANSFAC motif pairs with lowest classification error in Mouse Heart.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00243 Egr-1
CGTA
CAGT
AG
T
CA
GCGTA
GGGTACGG
T M00807 EGRCTG
ACT
AGGA
GACGGT
GC
TAG
TAG
AGC FG 0.408 0.548 0.636
M00196 Sp1TCAG
TCAG
CATG
AGG
C
GTAC
A
T
CG
TG
CTAG
TCAG
AGTC
ATGC M00941 MEF-2
TAG
TCGT
CCT
CTATATA
TATA
TGA
CTAG FG 0.412 0.474 0.702
M00332 WhnCGTA
TCGA
AGTC
TACGACGCA
GCT
CGAT
ACGT M00976 AHRHIF
ACGT
AG
A
CGTGGTAC
ATCG
TACG FG 0.417 0.590 0.576
M00413 AREB6CGTA
GACT
GCATCACCTA
CTG
GCAT
GCTA
AGTC M00670 TCF-1(P)
AGG
TGCA
GGTGTT BG 0.418 0.388 0.776
M00526 GCNFTGAC
ACGT
TAGC
CTGA
GTA
A
GCGTTCAC
ATG
A
CGT
A
CGT
TC
CGTAG
TAC
AGTC M00655 PEA3
GTA
TCATTCCG
T BG 0.421 0.434 0.724
Table 19: Five TRANSFAC motif pairs with lowest classification error in Human Hypothalamus.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00695 ETF
TGA
GC
TGGA
CCGG M01013 IPF1
GACT
ATCG
CATG
ACG
ACT
TACATC
TTAC
TAG
GCTA
ATCG
GACT
ATGC FG 0.399 0.734 0.468
M00239 v-ErbAACG
GCTA
ACGT
GT
CAG
GAGGTCAA
TC
ATCG
AGC
AGTC
GTCA M00492 STAT1
ATGC
TCGA
GACT
A
C
G
TA
G
CT
G
TAC
A
G
T
CA
T
CG BG 0.409 0.524 0.658
M00491 MAZRCTAG
ACG
TCAG
ATG
AG
TAGG
A
GGGTAC
GTAC
TGCA M00980 TBP
ACGTTTG
CTA
AT
GCTA
AGTC FG 0.411 0.622 0.556
M00136 Oct-1TCGA
CGAT
ACTG
TGCA
CGTA
CATAC
TCTG
T
CCTGA
GCAT
CAGT
GACT
GCTA M00333 ZF5
AGTC
CTAG
CATG
CAG
TACG
CTAG
TC
ATG
AGTC
ACTG
GTC
GAT
CGAT FG 0.421 0.396 0.762
M00650 MTF-1ACGT
CGTTGCG
ACTCACC
TAG
CTG
AGC
GTAC
TGC M00947 CP2/LBP-1c/LSF
TAG
GC
AT
TG
CGA
CGT
AGCT
GACT
ACTG
TGAC
CTAG
GC
AGCT
CATG
CG FG 0.421 0.662 0.496
Table 20: Five TRANSFAC motif pairs with lowest classification error in Mouse Hypothalamus.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00025 Elk-1
AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC M01010 HMGIY
GCTA
TGAC
CAGT
CATG
ATGC
GCTA
GTA
GAT
CT
GAT
AGCT
GACT
ACT
CATG
CGTA BG 0.382 0.562 0.674
M00083 MZF1CTGA
CTAG
ACGTGA
TG
TGGC
GA M00646 LF-A1 GGA
GACG
ATCT
AAG FG 0.405 0.442 0.748
M00101 CdxACGTA
GAT
AT
GAT
CA
AGCT
TGA M00739 E2F-4:DP-2
GAT
ATTG
CGCCGG
C BG 0.406 0.440 0.748M00223 STATx TTA
CTC
GTC
CAG
TG
CAA M00991 CDX
CGAT
CA
ATC
GCTA
CGA
CTA
GATC
TCGA
TAG
CTGA
ACTG
ACT
CTA
TGATC
GA
CTA
CGA BG 0.406 0.618 0.570
M00072 CP2CG
GCA
CT
AC
AGT
CA
GACCA
CAG M00319 MEF-3 TG
CGC
GTCAGGCTTA
TTC
CGTA FG 0.408 0.694 0.490
Table 21: Five TRANSFAC motif pairs with lowest classification error in Human Kidney.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00469 AP-2alpha GCCA
GTC
ATCG
TCAG
TCAG
TCAG
ATCG M00684 XPF-1
GTCG
AT
TGG
ATAG
CGAC
AGC FG 0.396 0.686 0.522
M00134 HNF-4CGTA
TAGC
CTGA
CTAG
TAG
CATG
ACGT
AGTC
CTGA
GA
TGA
TAG
CATG
ACGT
GTC
TCGA
GTAC
CTAG
CGTA M00206 HNF-1
GTAGG
CT
CT
GA
GTA
ATC
GT
TCA
GATTG
CTA
GTAA
CATC
CTA
GCA FG 0.406 0.448 0.740
M00255 GCCGTA
CTAG
CATG
AGGGT
AC
AG
TG
TAG
CATG
GTC
AGCT
CATG M00796 USF
TCAG
TCGA
TGAC
TAC
G
TCA
ATGC
CAG
A
C
GT
CG
C
TGA
TGC
GTAC FG 0.420 0.628 0.532
M00428 E2F-1AGCT
CGT
ATG
CCG
GC
CG
TGC M00652 Nrf-1 CA
GCTGATGCGCG
A BG 0.427 0.462 0.684M00181 E2
TACG
GTCA
TA
GAC
ACC
TAG
CGTA
GCTA
TCGA
GTAC
ATCGGTT
CAG
TGAC M01002 DEAF1
TCAG
TGAC
CTAG
CTAG
TCAG
ACT
AGTCC
GATG
ACTG
CGAT
TCGA
CAGTC
TAGTT
CTCC
GCATG
CTAG
CGA
CAGT
ACTG
GACT BG 0.430 0.544 0.596
Table 22: Five TRANSFAC motif pairs with lowest classification error in Mouse Kidney.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00103 Clox
CGAT
GCTA
CAGTATT
CGATG
ACT
C
GTA
CAGT
GACT
CAGT
CGAT M00918 E2F
AGCT
AGT
AGCTC
GCGCGG
CATCG BG 0.364 0.554 0.718
M00465 POU6F1CAG
TAC
TA
AT
CTA
CGAA
TTATAG
T M00695 ETFTGA
GC
TGGA
CCGG BG 0.376 0.648 0.600
M00071 E47GTCA
GCAT
ACGT
GTCA
TCGACAT
CGC
GTGGCT
CGAT
TGAC
TGCA
TGAC M00646 LF-A1 GGA
GACG
ATCT
AAG FG 0.384 0.602 0.630
M00129 HFH-1ACGT
CTGA
CAT
ATGTTTG
ACGT
GAT
ACT M00224 STAT1
ACTG
CATG
AGCT
TACG
TCGA
GCATTTG
TA
CCCGGA
GAACTGA
ACGT
CAG
CTAG
T
ACG
CTAG BG 0.385 0.714 0.516
M00025 Elk-1AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC M00248 Oct-1
CGAT
ATCG
ACTATT
GTGC
ATAATT BG 0.389 0.496 0.726
Table 23: Five TRANSFAC motif pairs with lowest classification error in Human Liver.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00332 Whn
CGTA
TCGA
AGTC
TACGACGCA
GCT
CGAT
ACGT M00716 ZF5
TAG
TACG
CAG
TAGC
CTAG
AGTC
ACTGA
G BG 0.345 0.730 0.580M00322 c-Myc:Max
TACG
TGCCT
GAT
CAG
ATCGT
AGC
ATCG M00695 ETF
TGA
GC
TGGA
CCGG BG 0.358 0.504 0.780
M00162 Oct-1AGC
GTA
CGAT
CTA
CTATG
TGTA
AGCATT
AG
CT
CGAT M00912 C-EBP
GCTATG
TCTAGCG
TCA
GATC
GTCA
CTGA
AGCT
GACT
GCAT FG 0.398 0.526 0.678
M00124 Pbx1bTGAC
GCTA
GTAC
C
GA
C
TCCAATC
G
T
CA
C
GTA
CGTA
GCAT
GCAT M00150 Brachyury
GTAC
CAGT
TCA
ATCG
ACT
ACG
TGACG
AAGTC
ATGC
ACTAGGTGC
TATCGAT
CA
GTA
GACT
ACGT FG 0.399 0.602 0.600
M00722 core-bindingATGC
TGGCTA
CTAT M00790 HNF-1
CGAT
CTAG
CATG
CT
CGAT
GCTA
GTCATC
GTA
CGTA
CGAT
AGCT
CGTA
CGTA
GATC
CGTA
TACG
GCAT FG 0.406 0.498 0.690
Table 24: Five TRANSFAC motif pairs with lowest classification error in Mouse Liver.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00045 E4BP4
GTAC
CAG
ATG
TACT
AGTAAG
TC
CTAG M00162 Oct-1
AGC
GTA
CGAT
CTA
CTATG
TGTA
AGCATT
AG
CT
CGAT BG 0.334 0.604 0.728
M00510 Lhx3T
GCA
CGTA
GTTAAC
TAG
CT
CTA
CGTA M00672 TEF
TATA
GCGT
AT
CAT
TA
ACT
GA
CTAA BG 0.341 0.648 0.670
M00132 HNF-1TAG
AG
ATA
TTA
GCTA
ATC
TAG
GTA
CGAT
ACT
CTGA
GTAC
TAC
TGCA M00802 Pit-1
GCTA
TCA
AT
CGTCC
TA
AT
CTGA
CTA
GATC
GT
CGA
CAT
GCTA
GATC
GTCA
GATC
CTA BG 0.342 0.630 0.686
M00095 CDPATC
TC
TA
CATAT
ACT
GTCA
GGTA
CGAT M00402 MEF-2
AGT
ATGC
AT
CATTAT
AGCA
CAT
CA BG 0.346 0.678 0.630
M00729 Cdx-2CA
CGAT
CTA
ACTG
AGT
CT
ATA
TACTA
GT
AG
TC
ATC M00744 POU1F1
GTATGG
CTA
TATG
TAT
AGTA
CAT BG 0.347 0.610 0.696
Table 25: Five TRANSFAC motif pairs with lowest classification error in Human Lung.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00463 POU3F2
TCA
CTA
GACATA
TATTA
ATTA
TCAT M01000 AIRE
CG
ACGTTC
TATA
TGTA
CTA
CGT
ACTGG
GAT
CT
GA
CGT
CGA
CTTC
TG
ACGC
GT
CGTG
TA BG 0.371 0.612 0.646
M00138 Oct-1CAGT
GACT
CGTA
ACGT
CTAG
CGTA
CGAT
GCAT
T
GCA
CGT
C
ATG
GATC
CTA
GTA
C
GA
CGAT
GCAT
GCTA
CGTA
CGTA
GTCA
ATCG
CGTA M00293 Freac-7
CGAT
GCTA
CAGT
TCGA
GATC
GA
CT
CAAAT
CCGA
GCTA
CTAG
CGTA
CGAT BG 0.374 0.508 0.744
M00648 MAFAT
TAG
AGG
AAGGGAAGTG
TTG
TCG
GC
AGT M00932 Sp-1
TCGA
TCAG
CATG
AGGG
GTAC
ACTG
TG
TCAG
TCAG
AGTC
ATGC FG 0.375 0.608 0.642
M00720 CAC-bindingAGG
ATGGC
GATGGC
G M00800 AP-2ACG
TGCCT
AGC
TGC
ATC
CAG
CAG
CG
GCC
ATG
TAG
CGTA
CAG
TACG
ATCG FG 0.377 0.718 0.528
M00103 CloxCGAT
GCTA
CAGTATT
CGATG
ACT
C
GTA
CAGT
GACT
CAGT
CGAT M00772 IRF
GCT
GACT
AGTC
CTGA
ATCG
AGT
AGTTCG
CTA
AGTC
GTTG
ACT
AGTC BG 0.378 0.510 0.734
Table 26: Five TRANSFAC motif pairs with lowest classification error in Mouse Lung.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00183 c-Myb
TACG
AGCT
AGTC
CAACA
CGT
CATG
ATCG
AGTC M00235 AhR:Arnt
AGT
CGAT
CGTA
CATG
CTAG
CATG
CAGT
AGCT
T
GT
CGTGTAC
TAC
ACG FG 0.410 0.560 0.620
M00238 BarbieGCTA
CAGT
GTAC
CGTAAAAGA
TGC
GCAT
ACTG
CTAG
CGTA
ATG
CTAG M00419 MEIS1
GATC
GCTA
TCAG
AGTG
GTACAA
TCG
CTAG
CAGT
ATGC FG 0.412 0.592 0.584
M00658 PU.1GTA
CG
CGA
AGGAAA
CG M00806 NF-1
GCAT
CGAT
TCAG
CTAG
GTCA
GACT
GCTA
TGAC
ACGT
CGAT
CTG
G
T
CAC
C
TA
TGA
CATG
TCGA FG 0.414 0.508 0.664
M00034 p53AGA
GGACATGT
CCCGGAGCATGC
TTC
GCT M00059 YY1
ACTG
TCGA
CGAT
ATGC
CGAT
AGTCCC
AGTC
GAT
ACGT
GCAT
ACGT
ACTG
TCAG
CGTA
ATGC FG 0.419 0.574 0.588
M00188 AP-1TCAG
ACGTGG
ATC
ACGT
TGAC
GTCA
ATCG
GCAT M00772 IRF
GCT
GACT
AGTC
CTGA
ATCG
AGT
AGTTCG
CTA
AGTC
GTTG
ACT
AGTC FG 0.421 0.490 0.668
Table 27: Five TRANSFAC motif pairs with lowest classification error in Human LymphNode.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00803 E2F
CG
CGCGG
CACTG M01002 DEAF1
TCAG
TGAC
CTAG
CTAG
TCAG
ACT
AGTCC
GATG
ACTG
CGAT
TCGA
CAGTC
TAGTT
CTCC
GCATG
CTAG
CGA
CAGT
ACTG
GACT BG 0.395 0.448 0.762
M00035 v-MafCGTA
CGAT
GCTA
G
ACT
T
AG
T
AC
ACT
A
CTG
GAT
CACGT
TGAC
C
GTA
A
TG
TAGC
TCGA
GATC
TGCA
TGCA M00468 AP-2rep
TAC
CTA
ACG
CT
CTAG
ACTG
CATG FG 0.395 0.646 0.564
M00480 LUN-1 TCCCAGAGCTT
AAC
CTTA
CT
AGGGA M00532 RP58
ACTG
TCGA
CA
GACAG
TG
CTGCTG
GCA FG 0.401 0.520 0.678
M00658 PU.1GTA
CG
CGA
AGGAAA
CG M00761 p53
TCGA
AGG
AT
AGC
CGTA
CGTA
AGG
ACT
ATGC
AGTC FG 0.402 0.440 0.756
M00277 Lmo2ATGC
ATCG
TAGCCAA
TG
ACGTGG
TC
GCAT
ATCG M00984 PEBP
TCAG
AGTC
CAT
TCGA
CACCG
ACGTA
CTGA
TCGA
ATGC
ATCG
CAGT FG 0.402 0.572 0.624
Table 28: Five TRANSFAC motif pairs with lowest classification error in Mouse LymphNode.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00025 Elk-1
AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC M00695 ETF
TGA
GC
TGGA
CCGG BG 0.387 0.596 0.630
M00145 Brn-2ACTG
AGCT
AGTC
TA
ATA
CGT
ATGC
TAG
ATAAAT
TCAG
GTCA
TAG
GATC M00803 E2F
CG
CGCGG
CACTG BG 0.398 0.664 0.540
M00800 AP-2ACG
TGCCT
AGC
TGC
ATC
CAG
CAG
CG
GCC
ATG
TAG
CGTA
CAG
TACG
ATCG M00801 CREB
AGTC
C
T
A
GCTC
C
T
AACGT BG 0.410 0.538 0.642
M00961 VDRTGAC
AGTC
ATCG
ACTG
ACTG
ACGT
TACG
CGA
GCA
ATGC
AGTC
GATC M00986 Churchill
AGTCGGGC
TAG
TCAG BG 0.410 0.734 0.446
M00935 NF-ATATCG
GCATG
A
GAGA
CTA
GTCA
GCAT
AGCT M00998 PBX GT
ACGT
AGT
AGAG
AT
CTG
ATG
ACGT
GCAT
ATCG FG 0.411 0.426 0.752
Table 29: Five TRANSFAC motif pairs with lowest classification error in Human OlfactoryBulb.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00518 PPARalpha:RXR-alpha
GACT
GTAC
CTAGGGC
GT
AGTC
CGATG
AT
ACTG
CAGGGG
TTGC
TGA
CTAG
ACTG M00720 CAC-binding
AGG
ATGGC
GATGGC
G FG 0.391 0.530 0.688M00422 FOXJ2
GCAT
GCAT
GTCA
GCAT
GCA
CTGA
GAC
TAAATC
GAG
CAT
GCAT
GATC
GTCA
CGTA M00773 MYB
CTGA
ATCG
CAGT
ACTG
ATCG
AGTC
TGCAGTG
TTCAG BG 0.397 0.684 0.522
M00025 Elk-1AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC M00124 Pbx1b
TGAC
GCTA
GTAC
C
GA
C
TCCAATC
G
T
CA
C
GTA
CGTA
GCAT
GCAT BG 0.400 0.496 0.704
M00152 SRFCGTA
AT
AT
GTACCCT
AATATT
AATGGG
CAT
TGCA
CGTA
ACGT M00482 PITX2
CAT
CAGTTC
AGA
GTCA
GC
AC
CGTA
CGA BG 0.401 0.430 0.768
M00316 ImperfectCAG
GAT
AGA
GAT
CG
CAG
AGTCA
GTC
CGTAT
CTAG
ACT
CTGT
CTAG
ATTCA
TC
TCAT
GAC
CA
ATC
ACGT M00912 C-EBP
GCTATG
TCTAGCG
TCA
GATC
GTCA
CTGA
AGCT
GACT
GCAT BG 0.403 0.428 0.766
Table 30: Five TRANSFAC motif pairs with lowest classification error in Mouse OlfactoryBulb.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00695 ETF
TGA
GC
TGGA
CCGG M00976 AHRHIF
ACGT
AG
A
CGTGGTAC
ATCG
TACG BG 0.368 0.750 0.514
M00136 Oct-1TCGA
CGAT
ACTG
TGCA
CGTA
C
ATAC
TC
TG
T
CCTGA
GCAT
CAGT
GACT
GCTA M00428 E2F-1
AGCT
CGT
ATG
CCG
GC
CG
TGC BG 0.384 0.608 0.624
M00485 Nkx2-2AT
GCTAAGA
TCAG
TCG
ACT
AT M00960 PR,
CATG
GCTA
CTGA
GTAGT
GAAG
CTAA
CGT FG 0.391 0.550 0.668
M00459 STAT5BCATG
CGTA
C
GATTTC
G
TC
AGCT
CAGGAAC
GAT
G
ACT
GACT M00478 Cdc5
CG
CGTA
AGT
AGT
ATAC
TA
ATC
TGA
ACT
CGA
GTA FG 0.396 0.592 0.616
M00152 SRFCGTA
AT
AT
GTACCCT
AATATT
AATGGG
CAT
TGCA
CGTA
ACGT M00980 TBP
ACGTTTG
CTA
AT
GCTA
AGTC FG 0.399 0.504 0.698
Table 31: Five TRANSFAC motif pairs with lowest classification error in Human Ovary.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00144 BSAP
CAG
GA
TAC
ACG
GAT
AG
GTA
ACGT
GAT
GCT
GTC
CT
ACTG
GA
GAGCGG
TAG
TACA
CG
GA
CT
CGTA
ACG
TAC M00716 ZF5
TAG
TACG
CAG
TAGC
CTAG
AGTC
ACTGA
G FG 0.300 0.780 0.620M00079 Evi-1
CGTA
TGAC
TAAGACT
CAG
A M00802 Pit-1GCTA
TCA
AT
CGTCC
TA
AT
CTGA
CTA
GAT
CGT
CGA
CAT
GCTA
GATC
GTCA
GATC
CTA BG 0.334 0.644 0.688
M00138 Oct-1CAGT
GACT
CGTA
ACGT
CTAG
CGTA
CGAT
GCAT
T
GCA
CGT
C
ATG
GATC
CTA
GTA
C
GA
CGAT
GCAT
GCTA
CGTA
CGTA
GTCA
ATCG
CGTA M00423 FOXJ2
CGA
ACTA
CTAC
TAACT
GA
CGT
CT
GT
AGT
ACGT BG 0.355 0.528 0.762
M00451 NKX3ACGAT
CGAT
CGTA
ACT
TA
CA
TGTG
AACT
GTA
GCAT M00640 HOXA4 G
ACAT
TAAA
CT
GTA
GG BG 0.357 0.478 0.808M00310 APOLYA AT
ATAAATGC
ATG
GCCG
CAT
TATTC
GT M00744 POU1F1
GTATGG
CTA
TATG
TAT
AGTA
CAT BG 0.358 0.524 0.760
Table 32: Five TRANSFAC motif pairs with lowest classification error in Mouse Ovary.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00489 Nkx6-2
CTAG
CAT
TGA
GTATAAA
TAGT
CGTA
ACGT
ACGT M00976 AHRHIF
ACGT
AG
A
CGTGGTAC
ATCG
TACG BG 0.394 0.628 0.584
M00272 p53CGTA
CTAG
C
GA
TC
CGTA
GATGC
TTC
GACT M00444 VDR
AGA
GTGG
TTACG
CGTA
CAG
ACTG
CTAG
TAG
AGT
GCGAT
TCG
CGTA FG 0.406 0.522 0.666
M00451 NKX3ACGAT
CGAT
CGTA
ACT
TA
CA
TGTG
AACT
GTA
GCAT M00918 E2F
AGCT
AGT
AGCTC
GCGCGG
CATCG BG 0.408 0.504 0.680
M00105 CDPAGC
GCA
AGCG
AC
TCGA
GA
ACGT
TCGA
GACT
TCAG
CTATT
CGG M00185 NF-Y
ACGT
CGA
CTGACCAG
CATT
AGC
TGA
ATGC BG 0.409 0.510 0.672
M00025 Elk-1AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC M00695 ETF
TGA
GC
TGGA
CCGG BG 0.413 0.584 0.590
Table 33: Five TRANSFAC motif pairs with lowest classification error in Human Pancreas.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00144 BSAP
CAG
GA
TAC
ACG
GAT
AG
GTA
ACGT
GAT
GCT
GTC
CT
ACTG
GA
GAGCGG
TAG
TACA
CG
GA
CT
CGTA
ACG
TAC M00803 E2F
CG
CGCGG
CACTG BG 0.311 0.794 0.584
M00350 GATA-3TCGA
TCAG
GCTAGATG
TCA
CTA
ACTG
CGTA M01017 PBX1
TGCA
AGTC
TGCA
ACT
AC
TCA
CTGA
GCAT
GTC
CTGA
CGAT
CTAG FG 0.380 0.550 0.690
M00099 S8CGAT
GCAT
CAGT
CGTA
TGAC
GACT
A
TC
CGAATTAC
TGA
AGTC
ATGC
CGAT M00162 Oct-1
AGC
GTA
CGAT
CTA
CTATG
TGTA
AGCATT
AG
CT
CGAT FG 0.393 0.506 0.708
M00203 GATA-XGTAGAC
TATCGA
CTAG
CATG
TGAC
GTAC
GCAT M00690 AP-3
ACTCC
TGCA
CAAG
CT
CAT FG 0.394 0.656 0.556
M00199 AP-1TCGATT
GTAA
CGTA
CAACTG M00209 NF-Y
GCAT
GTCTGATTGGC
TACT
GAA
CG
ACT FG 0.401 0.656 0.542
Table 34: Five TRANSFAC motif pairs with lowest classification error in Mouse Pancreas.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00251 XBP-1
CTGA
ACGT
CTAG
GTCA
GCAT
ACTGACGTC
AG
CAGT
GATC
GTAC
GACT
GTA
CAGT M00716 ZF5
TAG
TACG
CAG
TAGC
CTAG
AGTC
ACTGA
G FG 0.405 0.614 0.576M00257 RREB-1
ACCA
CCACACAT
ACA
CCA
AC
ACA
CGTAC M00313 GEN-INI
ATGC
ATGC
AGCT
TC
CAC
AGT
GAT
AGCT FG 0.405 0.664 0.526
M00156 RORalpha1CTGA
CGAT
CGTA
CAT
TGAC
CGTA
GAGGTCAG
CAT M00711 Zta
CAT
GTAC
GCA
AGTC
AGCT
TACGTT
GGACA
TCA BG 0.419 0.476 0.686M00245 Egr-3
TCGA
CGAT
A
GCGTAGGGA
TCG
A
GT M00510 Lhx3
T
GCA
CGTA
GTTAAC
TAG
CT
CTA
CGTA FG 0.423 0.434 0.720
M00084 MZF1CATG
CATG
CTAG
ACGT
TG
GA
ATG
TG
ACG
ATG
TACG
GTA
TGCA M00467 Roaz GCACCCT
ATAGGGTCG
TAC FG 0.425 0.452 0.698
Table 35: Five TRANSFAC motif pairs with lowest classification error in Human Pituitary.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00249 CHOP:C/EBPalpha
TCGA
CTAG
CTGA
C
TT
GTAC
C
AG
CAC
TTGAC
TAGC
GTC
A
GTC M00448 Zic1
ACGT
TCAG
ACTG
ACTG
ACGT
ATCG
ACG
AGCT
TGAC FG 0.403 0.714 0.480
M00716 ZF5TAG
TACG
CAG
TAGC
CTAG
AGTC
ACTGA
G M00761 p53TCGA
AGG
AT
AGC
CGTA
CGTA
AGG
ACT
ATGC
AGTC FG 0.406 0.612 0.576
M00460 STAT5AA
C
TC
G
AT
AC
ATGC
GTAC
TCGA
A
T
GGTA
G
AGCAT
AGCT
ACTG
ATGC
ACTG
CGAT
A
CT
CGAT
TAC
ATGC
ACGT
TCGA
TCAG
CTGA
CAG M00727 SF-1
GT
TAG
GACCTTG BG 0.407 0.734 0.452
M00332 WhnCGTA
TCGA
AGTC
TACGACGCA
GCT
CGAT
ACGT M00419 MEIS1
GATC
GCTA
TCAG
AGTG
GTACAA
TCG
CTAG
CAGT
ATGC FG 0.414 0.714 0.458
M00181 E2TACG
GTCA
TA
GAC
ACC
TAG
CGTA
GCTA
TCGA
GTAC
ATCGGTT
CAG
TGAC M00329 Pax-9 A
GTA
CGT
GA
GTC
CG
TCAA
CTG
AGTCGC
GTA
AGTGG
AC
AG
ACT
AG
CAG
ATC
GC
GTA
GC
ATC FG 0.415 0.540 0.630
Table 36: Five TRANSFAC motif pairs with lowest classification error in Mouse Pituitary.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00444 VDR
AGA
GTGG
TTACG
CGTA
CAG
ACTG
CTAG
TAG
AGT
GCGAT
TCG
CGTA M00491 MAZR
CTAG
ACG
TCAG
ATG
AG
TAGG
A
GGGTAC
GTAC
TGCA FG 0.362 0.670 0.606
M00622 C/EBPgammaATC
CT
GTCAC
TGT
AT
AC
TA
CAGAG
TA
CAT M00639 HNF-6
CTA
CGTA
GTAAG
ATCCAATT
CGA
CGTA BG 0.377 0.500 0.746
M00451 NKX3ACGAT
CGAT
CGTA
ACT
TA
CA
TGTG
AACT
GTA
GCAT M00630 FOXM1 AA
GCTA
AT
AGT
CG
TA
TCGT BG 0.377 0.648 0.598
M00040 CRE-BP1 TGTACA
GTT
CA
CA M00402 MEF-2
AGT
ATGC
AT
CATTAT
AGCA
CAT
CA BG 0.379 0.608 0.634
M00423 FOXJ2CGA
ACT
AC
TAC
TAACT
GA
CGT
CT
GT
AGT
ACGT M00465 POU6F1
CAG
TAC
TA
AT
CTA
CGAA
TTATAG
T BG 0.381 0.660 0.578
Table 37: Five TRANSFAC motif pairs with lowest classification error in Human Placenta.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00102 CDP
CGAT
GCTA
CAGTATA
TCGATG
ACT
C
T
GA
CAGT
G
ACT
CGAT
GCAT M00920 E2F
GACT
A
CGT
TAGC
T
CGCGG
CTGC
GA
GCA
CTGA
GATC BG 0.397 0.572 0.634
M00332 WhnCGTA
TCGA
AGTC
TACGACGCA
GCT
CGAT
ACGT M00416 Cart-1
GTCA
TGAC
GTACTG
TAAC
TCGT
GTCA
GTAC
ATC
CGA
CT
CAT
CTGA
ACGT
AGTC
CAGT BG 0.415 0.522 0.648
M00024 E2FAT
CAT
ACG
CGCGG
CGAAAAACT
GT
AG M00114 Tax/CREB
ACTG
ACTG
TCG
CG
AG
ACGTTT
GACGAGCT
GCA
CAGT
CGTA BG 0.417 0.540 0.626
M00322 c-Myc:MaxTACG
TGCCT
GAT
CAG
ATCGT
AGC
ATCG M00651 NF-muE1
GCC
GGCCATTC
GT BG 0.420 0.424 0.736
M00470 AP-2gamma GCCA
GTC
ATCG
TCAG
TCAG
CTAG
ATCG M00632 GATA-4
TA
ATGAA
TCTA
GTA
GAC
GAGT
AG
ACG
GA FG 0.422 0.508 0.648
Table 38: Five TRANSFAC motif pairs with lowest classification error in Mouse Placenta.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00932 Sp-1
TCGA
TCAG
CATG
AGGG
GTAC
ACTG
TG
TCAG
TCAG
AGTC
ATGC M00977 EBF
CGTTCCCC
TAT
AGA
GGGTA FG 0.392 0.616 0.600
M00082 Evi-1GTA
AG
CAC
TTA
GTA
AG
TA
AT
TA
CTGA M00421 MEIS1B:HOXA9 TGACG
ATCG
ACGT
AT
AT
CGAT
GA
GCT
TAG
CAG BG 0.398 0.578 0.626
M00040 CRE-BP1 TGTACA
GTT
CA
CA M00410 SOX-9
GCAT
CTGA
CGTA
CTAG
CGTA
GCTACAAA
TCTAG
TCAG
CTAG
CGTA BG 0.400 0.604 0.596
M00418 TGIFTA
ACG
GTCTGTCT
AACTG
CGAT
GTA M00478 Cdc5
CG
CGTA
AGT
AGT
ATAC
TA
ATC
TGA
ACT
CGA
GTA BG 0.400 0.634 0.566
M00453 IRF-7ACGT
CTGA
ACG
TCAG
GAATAA
CGT
GTC
CTAG
TAC
ACGTA
ACTG
GACT
ACGT
CTAG
TACG M00538 HTF
TGCA
CAGT
GCAT
GCTA
GTA
CGTA
CGAT
CATG
TGCA
TACG
ACGTATC
CGTAC
GT
GATC
CGAT
ACT
CGAT
TAGC
CGAT
ACTG BG 0.403 0.596 0.598
Table 39: Five TRANSFAC motif pairs with lowest classification error in Human Prostate.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00099 S8
CGAT
GCAT
CAGT
CGTA
TGAC
GACT
A
TC
CGAATTAC
TGA
AGTC
ATGC
CGAT M00803 E2F
CG
CGCGG
CACTG FG 0.384 0.730 0.502
M00078 Evi-1GTAGAG
CT
TAAGAC
TTAAGAC
GT
CTA
CTA M00695 ETF
TGA
GC
TGGA
CCGG FG 0.400 0.522 0.678
M00532 RP58ACTG
TCGA
CA
GACAG
TG
CTGCTG
GCA M00986 Churchill
AGTCGGGC
TAG
TCAG FG 0.404 0.596 0.596
M00321 MuscleCAGT
ATGC
TAGC
TAGC
ATCG
TGAC
AGTC
TCAG
GTACCAA
GTC
AGTC
AGC
TAC
TACG
ATCG
TGAC
ACG
AGTC
GATC M00793 YY1
ATG
AGC
TC
CGA
CGT
AGTC
CAGT
ACGT
ACTG FG 0.405 0.480 0.710
M00328 Pax-8CGTA
ATGC
GCTA
ACTG
GACT
TGAC
CGTA
GACT
ACTG
TGAC
CTAG
ACGT
CATG
CTGA
CTAG
GCAT
GACT
TGAC M00351 GATA-3
CTGA
CGTA
CTAGATT
AC
AT
GAT
GCTA BG 0.420 0.546 0.614
Table 40: Five TRANSFAC motif pairs with lowest classification error in Mouse Prostate.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00651 NF-muE1
GCC
GGCCATTC
GT M00695 ETF
TGA
GC
TGGA
CCGG BG 0.325 0.736 0.614
M00100 CdxAGTCA
GAT
ATG
AT
TCGA
GCAT
TCAG M00770 C/EBP
CTAG
CTGA
TCGA
GCAT
ACGT
CGAT
CATGGG
ATC
G
TCA
G
AGCTA FG 0.336 0.536 0.792
M00332 WhnCGTA
TCGA
AGTC
TACGACGCA
GCT
CGAT
ACGT M00939 E2F-1
GACT
AGT
AGCT
A
CG
CGCGG
CACTG BG 0.336 0.742 0.586
M00145 Brn-2ACTG
AGCT
AGTC
TA
ATA
CGT
ATGC
TAG
ATAAAT
TCAG
GTCA
TAG
GATC M00624 DBP AT
GCTA
CTA
CTA
TAC FG 0.349 0.608 0.694
M00136 Oct-1TCGA
CGAT
ACTG
TGCA
CGTA
C
ATAC
TC
TG
T
CCTGA
GCAT
CAGT
GACT
GCTA M00477 FOXO3
GACT
CAGT
ATCG
GTTGTTA
GT
TA
GTC
CGTA
CAT
CTA FG 0.350 0.534 0.766
Table 41: Five TRANSFAC motif pairs with lowest classification error in Human SalivaryGland.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00346 GATA-1
TCAG
GTAC
CATGATAAA
GC
GTCA M00918 E2F
AGCT
AGT
AGCTC
GCGCGG
CATCG BG 0.378 0.522 0.722
M00332 WhnCGTA
TCGA
AGTC
TACGACGCA
GCT
CGAT
ACGT M00652 Nrf-1 CA
GCTGATGCGCG
A BG 0.381 0.684 0.554M00189 AP-2
GAC
ATG
TCCT
CACG
AGC
TGAC
ACTG
ACG
GAC
ATCG M00743 c-Ets-1
GC
GCAGGAT
AGTC BG 0.386 0.594 0.634
M00109 C/EBPbetaCTGA
CATG
TCGA
AT
AGT
TAG
CAGTGT
AC
CAAC
AGT
TACG
ACGT M01017 PBX1
TGCA
AGTC
TGCA
ACT
AC
TCA
CTGA
GCAT
GTC
CTGA
CGAT
CTAG FG 0.398 0.562 0.642
M00126 GATA-1ACTG
GCAT
TGCA
CAGT
GCTAGATAT
CAG
CATG
TCAG
ACTG
CGAT M00419 MEIS1
GATC
GCTA
TCAG
AGTG
GTACAA
TCG
CTAG
CAGT
ATGC FG 0.399 0.558 0.644
Table 42: Five TRANSFAC motif pairs with lowest classification error in Mouse SalivaryGland.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00227 v-Myb
AGCT
TAGC
CTAAC
CTGGA
TC M00939 E2F-1
GACT
AGT
AGCT
A
CG
CGCGG
CACTG BG 0.337 0.700 0.626
M00695 ETFTGA
GC
TGGA
CCGG M00743 c-Ets-1
GC
GCAGGAT
AGTC BG 0.340 0.616 0.704
M00310 APOLYA ATATAAAT
GC
ATG
GCCG
CAT
TATTC
GT M00802 Pit-1
GCTA
TCA
AT
CGTCC
TA
AT
CTGA
CTA
GATC
GT
CGA
CAT
GCTA
GATC
GTCA
GATC
CTA FG 0.401 0.408 0.790
M00066 Tal-1alpha:E47CAGT
AGTC
ATCG
TCGA
GCACAT
GCGATG
CTG
GCT
TACG
GTCA
TAGC M00962 AR
CGAT
ATCG
GTA
CTAG
GTAC
CAG
TAC
TAG
CGAT FG 0.402 0.568 0.628
M00477 FOXO3GACT
CAGT
ATCG
GTTGTTA
GT
TA
GTC
CGTA
CAT
CTA M00517 AP-1
ATCG
TCGA
CTGA
CAGT
CATG
GCTA
TACGTT
ACAA
CTG
GTAC
TGCA FG 0.404 0.518 0.674
Table 43: Five TRANSFAC motif pairs with lowest classification error in Human SkeletalMuscle.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00474 FOXO1
CATG
CAGT
ACTG
CATTGA
TAT
GTT
ATC
CTAG
ACGT
GCT M00940 E2F-1
CATG
ACGT
CGAT
ACTG
CCGCGG
CTGC BG 0.415 0.482 0.688
M00224 STAT1ACTG
CATG
AGCT
TACG
TCGA
GCATTTG
TA
CCCGGA
GAACTGA
ACGT
CAG
CTAG
T
ACG
CTAG M00773 MYB
CTGA
ATCG
CAGT
ACTG
ATCG
AGTC
TGCAGTG
TTCAG BG 0.417 0.454 0.712
M00330 MajorTAG
AGC
GGTAA
GAG
GTC
CA
ACG
GA
AG
AG
GTC
GA
TG
TCG
GATC
CTAG
TAG M00959 ER
TGAC
CGA
A
TGG
A
GT
A
GC
C
TAA
GTC
TACG
TACG
GACT FG 0.418 0.520 0.644
M00045 E4BP4GTAC
CAG
ATG
TACT
A
GTAAGTC
CTAG M00410 SOX-9
GCAT
CTGA
CGTA
CTAG
CGTA
G
CTACAAA
TCTAG
TCAG
CTAG
CGTA BG 0.420 0.454 0.706
M00231 MEF-2AGCT
ATGC
ATGC
ATCG
CATG
CGAT
CATG
AGTC
ACTT
ATA
TA
TAT
ATAAG
TGAC
GCTA
GATC
GTAC
GACT M00800 AP-2
ACG
TGCCT
AGC
TGC
ATC
CAG
CAG
CG
GCC
ATG
TAG
CGTA
CAG
TACG
ATCG FG 0.422 0.508 0.648
Table 44: Five TRANSFAC motif pairs with lowest classification error in Mouse SkeletalMuscle.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00255 GC
CGTA
CTAG
C
ATG
AGGGT
AC
AG
TG
TAG
CATG
GTC
AGCT
CATG M00979 PAX6
GAC
AGTGG
TA
GC
AGC
CTT
GTG
CGTA
GA
ATGC
ACGT
GTAC FG 0.393 0.702 0.512
M00690 AP-3ACTCC
TGCA
CAAG
CT
CAT M00795 Octamer
CAGT
CATG
GCTA
CAT
GCAT
CGAT
CTAG
TAC
TA
A
C
GTCGTA BG 0.394 0.478 0.734
M00498 STAT4TCG
CGTA
CATTTA
CAGCT
CGAT M00631 FXR/RXR-alpha
GTCAG
ACGT
GGTC
GAGATTG
AAAC
TC BG 0.395 0.644 0.566
M00121 USFTCGA
CATG
CTGA
GACTC
C
GATC
AG
C
GTGCTGA
AGCT
GTAC
AGCT M00939 E2F-1
GACT
AGT
AGCT
A
CG
CGCGG
CACTG FG 0.400 0.546 0.654
M00203 GATA-XGTAGAC
TATCGA
CTAG
CATG
TGAC
GTAC
GCAT M00941 MEF-2
TAG
TCGT
CCT
CTATATA
TATA
TGA
CTAG BG 0.401 0.416 0.782
Table 45: Five TRANSFAC motif pairs with lowest classification error in Human Testis.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00332 Whn
CGTA
TCGA
AGTC
TACGACGCA
GCT
CGAT
ACGT M00497 STAT3
ATCG
TCAG
TGAC
A
CGT
AGT
G
TAC
A
G
TC
ATGC BG 0.408 0.572 0.612
M00189 AP-2GAC
ATG
TCCT
CACG
AGC
TGAC
ACTG
ACG
GAC
ATCG M00341 GABP
CGA
GC
AGCGGAAGG
ACT
TG
TGC
CTGA BG 0.410 0.600 0.580
M00228 VBPTCAGTTC
GA
GTCA
GTCA
TA
ACGT M00975 RFX
AGC
ACTGA
TTCG
TAC
TGC
CTGA FG 0.412 0.376 0.800
M00227 v-MybAGCT
TAGC
CTAAC
CTGGA
TC M00254 CCAAT
GTCA
AGTC
GACT
GA
CTAGCCAC
GTA
GAT
TAGC
CGA FG 0.412 0.600 0.576
M00639 HNF-6CTA
CGTA
GTAAG
ATCCAATT
CGA
CGTA M01009 HES1
CTGA
TCGA
ACG
TCG
ACG
TGTCGTGT
CG
ATGC
AGCT
GTAC
CTAG FG 0.413 0.614 0.560
Table 46: Five TRANSFAC motif pairs with lowest classification error in Mouse Testis.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00045 E4BP4
GTAC
CAG
ATG
TACT
AGTAAG
TC
CTAG M00101 CdxA
CGTA
GAT
AT
GAT
CA
AGCT
TGA BG 0.380 0.580 0.660
M00080 Evi-1TAGAC
TTAAGATT
ACTGA M00802 Pit-1
GCTA
TCA
AT
CGTCC
TA
AT
CTGA
CTA
GATC
GT
CGA
CAT
GCTA
GATC
GTCA
GATC
CTA BG 0.388 0.638 0.586
M00350 GATA-3TCGA
TCAG
GCTAGATG
TCA
CTA
ACTG
CGTA M00477 FOXO3
GACT
CAGT
ATCG
GTTGTTA
GT
TA
GTC
CGTA
CAT
CTA BG 0.391 0.576 0.642
M00145 Brn-2ACTG
AGCT
AGTC
TA
ATA
CGT
ATGC
TAG
ATAAAT
TCAG
GTCA
TAG
GATC M00478 Cdc5
CG
CGTA
AGT
AGT
ATAC
TA
ATC
TGA
ACT
CGA
GTA BG 0.393 0.602 0.612
M00133 Tst-1ACTG
CTAG
CTG
ACG
TAT
ATAT
CTA
ACG
CGA
ACG
CGT
AGT
ATCG M01007 SRF
ATGC
GTCA
ACGT
ATGC
ACGT
TC
TCC
AT
AT
CGTA
C
GTC
GTA
CGAT
AG
A
GAGTC
GTAC
CGTA
ACGT BG 0.398 0.464 0.740
Table 47: Five TRANSFAC motif pairs with lowest classification error in Human Thymus.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00476 FOXO4
GTCA
ACGT
CTGTTGTTC
AT
TA
TCT
ACG
GCAT
ACGT M00918 E2F
AGCT
AGT
AGCTC
GCGCGG
CATCG FG 0.360 0.578 0.702
M00025 Elk-1AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC M00332 Whn
CGTA
TCGA
AGTC
TACGACGCA
GCT
CGAT
ACGT FG 0.383 0.626 0.608
M00349 GATA-2GTCA
ACG
CTAGATC
AGTA
ACTGA M00704 TEF-1 GA
GGAATG BG 0.407 0.544 0.642
M00082 Evi-1GTA
AG
CAC
TTA
GTA
AG
TA
AT
TA
CTGA M00285 TCF11
CAGTCAA
CT
ACGT
GACT
CGAT
CATG
ACTG
GTAC
GTAC
ATCG BG 0.422 0.522 0.634
M00070 Tal-1beta:ITF-2ATCG
ATCG
ATCG
TGA
TGCACAT
GC
GATG
CTG
CT
AGTC
GCAT
ATGC M00326 Pax-1 CCGTTA
CCGGCTCTAGATAT BG 0.424 0.466 0.686
Table 48: Five TRANSFAC motif pairs with lowest classification error in Mouse Thymus.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00695 ETF
TGA
GC
TGGA
CCGG M01017 PBX1
TGCA
AGTC
TGCA
ACT
AC
TCA
CTGA
GCAT
GTC
CTGA
CGAT
CTAG FG 0.403 0.672 0.522
M00034 p53AGA
GGACATGT
CCCGGAGCATGC
TTC
GCT M00652 Nrf-1 CA
GCTGATGCGCG
A FG 0.407 0.626 0.560M00189 AP-2
GAC
ATG
TCCT
CACG
AGC
TGAC
ACTG
ACG
GAC
ATCG M00463 POU3F2
TCA
CTA
GACATATA
TTA
ATTA
TCAT FG 0.414 0.572 0.600
M00126 GATA-1ACTG
GCAT
TGCA
CAGT
GCTAGATAT
CAG
CATG
TCAG
ACTG
CGAT M00794 TTF-1
GTAC
GTAC
ATGC
GACT
ATGC
TAG
AA
GCGAT
TCAG
ATCG
AGTC BG 0.414 0.590 0.582
M00084 MZF1CATG
CATG
CTAG
ACGT
TG
GA
ATG
TG
ACG
ATG
TACG
GTA
TGCA M00928 E2
AGCT
ACTG
GACTAA
CCTAG
ACGT
CGT
GAT
AGCT
AGTCGT
GTCGT BG 0.417 0.590 0.576
Table 49: Five TRANSFAC motif pairs with lowest classification error in Human Thyroid.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00114 Tax/CREB
ACTG
ACTG
TCG
CG
AG
ACGTTT
GACGAGCT
GCA
CAGT
CGTA M00695 ETF
TGA
GC
TGGA
CCGG BG 0.343 0.688 0.626
M00803 E2FCG
CGCGG
CACTG M00986 Churchill
AGTCGGGC
TAG
TCAG BG 0.345 0.706 0.604
M00045 E4BP4GTAC
CAG
ATG
TACT
A
GTAAGTC
CTAG M00199 AP-1
TCGATT
GTAA
CGTA
CAACTG FG 0.381 0.634 0.604
M00161 Oct-1GAC
GT
CGA
CATTA
TCTGCATG
TA
ACT
GCT M00639 HNF-6
CTA
CGTA
GTAAG
ATCCAATT
CGA
CGTA FG 0.386 0.610 0.618
M00079 Evi-1CGTA
TGAC
TAAGACT
CAG
A M00351 GATA-3CTGA
CGTA
CTAGATT
AC
AT
GAT
GCTA FG 0.389 0.556 0.666
Table 50: Five TRANSFAC motif pairs with lowest classification error in Mouse Thyroid.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00005 AP-4 T
AACG
CGA
CAG
ACTCAGCG
TCG
GCT
ATGGA
CGT
AC
CGTA
TG M00808 Pax
GC
CAT
ATG
ACTG
CTGA
TGA
TGAC
AT
TAC
GCTA
TAC FG 0.416 0.646 0.522
M00238 BarbieGCTA
CAGT
GTAC
CGTAAAAGA
TGC
GCAT
ACTG
CTAG
CGTA
ATG
CTAG M00444 VDR
AGA
GTGG
TTACG
CGTA
CAG
ACTG
CTAG
TAG
AGT
GCGAT
TCG
CGTA FG 0.418 0.498 0.666
M00249 CHOP:C/EBPalphaTCGA
CTAG
CTGA
CT
T
GTAC
CA
GCAC
TTGAC
TAGC
GTC
AGTC M00652 Nrf-1 CA
GCTGATGCGCG
A BG 0.418 0.650 0.514M00155 ARP-1
CT
CG
CAA
GGTC
TCT
CACTTGG
AGAC
AC
TC
GTC
AT M00801 CREB
AGTC
C
T
A
GCTC
C
T
AACGT BG 0.421 0.472 0.686
M00701 SMAD-3ACT
AGG
TCCTGA
CTCA
CT M00775 NF-Y
TAGC
GTAC
AGCT
AGCT
TCGA
CAGC
AG
CACTA
CGT
T
AGC
TCGA FG 0.421 0.542 0.616
Table 51: Five TRANSFAC motif pairs with lowest classification error in Human Trachea.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00729 Cdx-2 C
ACGAT
CTA
ACTG
AGT
CT
ATA
TACTA
GT
AG
TC
ATC M00931 Sp-1
CATG
CAGGG
G
TAC
C
AT
GTG
TCAG
TACG
AGTC FG 0.403 0.656 0.538
M00187 USFATCG
ACTCACA
TG
ACGT
CTG
CATG
GTC M00646 LF-A1 GGA
GACG
ATCTAA
G FG 0.404 0.720 0.472M00130 FOXD3
CTAG
CTA
CAT
ACT
TAGTA
TAGT
TAG
GACT
ACGT
ACT M00665 Sp3 AT
CG
TAC
AC
CGT
AGT
CG
TGGA
CG
CGA
AG
CGG FG 0.408 0.528 0.656
M00500 STAT6TACG
TGCA
GATCTA
TCATC
GACT M00761 p53
TCGA
AGG
AT
AGC
CGTA
CGTA
AGG
ACT
ATGC
AGTC FG 0.412 0.528 0.648
M00526 GCNFTGAC
ACGT
TAGC
C
TGA
G
TA
A
GC
GTTCAC
ATG
A
C
GT
A
C
GT
TC
C
G
TAG
TAC
AGTC M00720 CAC-binding
AGG
ATGGC
GATGGC
G FG 0.414 0.648 0.524
Table 52: Five TRANSFAC motif pairs with lowest classification error in Mouse Trachea.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00651 NF-muE1
GCC
GGCCATTC
GT M00918 E2F
AGCT
AGT
AGCTC
GCGCGG
CATCG BG 0.326 0.700 0.648
M00652 Nrf-1 CAGCT
GATGCGCG
A M00695 ETFTGA
GC
TGGA
CCGG BG 0.351 0.808 0.490
M00342 Oct-1GACTATG
A
CGAAG
ACAGT
TGAC M00802 Pit-1
GCTA
TCA
AT
CGTCC
TA
AT
CTGA
CTA
GATC
GT
CGA
CAT
GCTA
GATC
GTCA
GATC
CTA FG 0.379 0.552 0.690
M00212 RetroviralATGCAG
TATAAAT
GCA
TCG
TC
ACT
TC
AGCT
GCT
CAGT
GC
ATATCG M00311 ATATA
TCGTAC
TATTAAGT
C FG 0.381 0.520 0.718M00250 Gfi-1
CGTA
TGAC
GTCA
TCGA
TCGA
GTCA
GACT
TGCAAATC
G
CTA
TAGC
GTA
ACTG
AGTC
GCTA
ACGT
CTGA
AGCT
ATCG
GTAC
AGTC M01014 SOX
ATC
GTCA
TTTGAT
GT
CTA
AGCT
ACG
CGTA FG 0.382 0.478 0.758
Table 53: Five TRANSFAC motif pairs with lowest classification error in Human TrigeminalGanglion.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00432 TTF1
TA
AGC
AT
GCAAGA
CT
TAG
GT M00764 HNF-4
AGT
CG
TGA
GTAC
ACC
TACT
AT
AGC
GTA
TGC
TC
GATC FG 0.415 0.558 0.612
M00133 Tst-1ACTG
CTAG
CTG
ACG
TAT
ATAT
CTA
ACG
CGA
ACG
CGT
AGT
ATCG M00767 FXR
AG
AG
AGTC
GT
TA
CATA
GTACCC
T FG 0.420 0.450 0.710M00406 MEF-2
ATGC
AGT
TCTAT
AAATATAC
ACTC
ATC
ACT M00621 C/EBPdelta
GCA
TATG
TATGCC
TAG
AGCT
TAC
TCA
GTC
ACT FG 0.421 0.642 0.516
M00639 HNF-6CTA
CGTA
GTAAG
ATCCAATT
CGA
CGTA M00707 TFIIA
CTC
ATTAG
CAT
GAAC
GCGG
AACG
GC FG 0.422 0.562 0.594
M00082 Evi-1GTA
AG
CAC
TTA
GTA
AG
TA
AT
TA
CTGA M00127 GATA-1
CGA
ACTG
ACG
TACG
GTAGATTC
GAATCG
TAGC
CTAG
ATCG FG 0.424 0.466 0.686
Table 54: Five TRANSFAC motif pairs with lowest classification error in Mouse TrigeminalGanglion.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00277 Lmo2
ATGC
ATCG
TAGCCAA
TG
ACGTGG
TC
GCAT
ATCG M00665 Sp3 AT
CG
TAC
AC
CGT
AGT
CG
TGGA
CG
CGA
AG
CGG BG 0.401 0.550 0.648
M00406 MEF-2ATGC
AGT
TCTAT
AAATATAC
ACTC
ATC
ACT M00978 LEF1TCF1
TGAC
GC
ACTTTA
GTA
AT
ACG
GACT
AGCT FG 0.403 0.612 0.582
M00237 AhR:ArntCTAG
CTAG
ATCG
ACTG
TGA
GTT
CGCGTGTCA
ATGC
GTA
CTGA
TCG
TGCC M00478 Cdc5
CG
CGTA
AGT
AGT
ATAC
TA
ATC
TGA
ACT
CGA
GTA FG 0.408 0.608 0.576
M00069 YY1AGTC
AGTC
ACTG
AGC
ACTG
AGCCATT
GC
ACGT
AGT
TCG
ACTG
GATC
ACGT
ATCG
ATGC
GAT M00211 Poly
ACTGTGA
GTTGC
CT
GTC BG 0.408 0.680 0.504
M00420 MEIS1A:HOXA9 TAG
GA
GCC
AGACGTTC
GT
GAT
CTA
ATC
TAG
GA M00436 IPF1
AG
CTA
CAGT
AGCTTAATA
GTA
ATC
TAC FG 0.409 0.620 0.562
Table 55: Five TRANSFAC motif pairs with lowest classification error in Human Uterus.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00721 CACCC-binding
TCG
ACAGT
GTC
GAC
AGTC
ACGT
ATGGGG
TGAGT
AG
CG M00803 E2F
CG
CGCGG
CACTG FG 0.359 0.786 0.496
M00078 Evi-1GTAGAG
CT
TAAGAC
TTAAGAC
GT
CTA
CTA M00915 AP-2
TGC
TACG
ATCG
ATGC
GTC
GTAC
ATGC
ATGC
TCGA
CGC
GGCA
TGC FG 0.363 0.664 0.610
M00132 HNF-1TAG
AG
ATA
TTA
GCTA
ATC
TAG
GTA
CGAT
ACT
CTGA
GTAC
TAC
TGCA M00672 TEF
TATA
GCGT
AT
CAT
TA
ACT
GA
CTAA BG 0.364 0.512 0.760
M00639 HNF-6CTA
CGTA
GTAAG
ATCCAATT
CGA
CGTA M00744 POU1F1
GTATGG
CTA
TATG
TAT
AGTA
CAT BG 0.364 0.540 0.732
M00644 LBP-1 CCGAGCTT
GGC M00665 Sp3 AT
CG
TAC
AC
CGT
AGT
CG
TGGA
CG
CGA
AG
CGG FG 0.369 0.752 0.510
Table 56: Five TRANSFAC motif pairs with lowest classification error in Mouse Uterus.
