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Fax +41 61 306 12 34 E-Mail [email protected] www.karger.com Debate Gerontology 2007;53:306–321 DOI: 10.1159/000103924 Screening Candidate Longevity Therapeutics Using Gene-Expression Arrays Stephen R. Spindler Patricia L. Mote Department of Biochemistry, University of California, Riverside, Calif., USA However, because the mice die mostly of cancer, only che- mopreventives active against specific cancers can be identi- fied by such studies. The studies were also time-consuming and expensive. We discuss high-density microarray studies of the effectiveness of glucoregulatory drugs and putative cancer chemopreventatives at reproducing the hepatic gene-expression profiles of long-term and short-term CR. We describe the identification of one compound, metfor- min, which reproduces a subset of the gene-expression and physiological effects of CR. Conclusion: Taken together, our results suggest that gene-expression biomarkers may be su- perior to lifespan studies for initial screening of candidate longevity therapeutics. Copyright © 2007 S. Karger AG, Basel Introduction At present, there are no authenticated longevity phar- maceuticals. This situation does not indicate that such compounds do not exist or cannot be developed. Rather, it indicates that we have not found an effective means for identifying such pharmaceuticals. Assays involving lifes- pan studies in model organisms have practical and theo- retical limitations. Therefore, some gerontologists con- jecture that aging must be fully understood before effec- Key Words Caloric restriction mimetics Insulin/IGF-I signaling Drug development Drug discovery Lifespan Microarray Abstract Background: We review studies showing that CR acts rap- idly, even in late adulthood, to extend health- and lifespan in mice. These rapid physiological effects are closely linked to patterns of gene expression in liver and heart. Non-hu- man primate and human studies suggest that the signal transduction pathways responsible for the lifespan and health effects of caloric restriction (CR) may also be involved in human longevity. Thus, pharmaceuticals capable of mim- icking the effects of CR (and other methods of lifespan ex- tension) may have application to human health. Objective: We show that lifespan studies are an inefficient and theo- retically problematic way of screening for longevity thera- peutics. We review studies suggesting that rapid changes in patterns of gene expression can be used to identify pharma- ceuticals capable of mimicking some positive effects of ca- loric restriction. Results: We present a traditional study of the effects of melatonin, melatonin and pregnenolone, aminoguanidine, aminoguanidine and -lipoic acid, amino- guanidine, -lipoic acid, pregnenolone, and coenzyme-Q 10 on the lifespan of mice. No treatment extended lifespan. Received: February 22, 2007 Accepted: March 28, 2007 Published online: June 15, 2007 Stephen R. Spindler, PhD Department of Biochemistry, University of California 3401 Watkins Drive Riverside, CA 92521 (USA) Tel. +1 951 827 3597, Fax +1 951 827 4434, E-Mail [email protected] © 2007 S. Karger AG, Basel 0304–324X/07/0535–0306$23.50/0 Accessible online at: www.karger.com/ger

Screening Candidate Longevity Therapeutics Using Gene-Expression Arrays

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Page 1: Screening Candidate Longevity Therapeutics Using Gene-Expression Arrays

Fax +41 61 306 12 34E-Mail [email protected]

Debate

Gerontology 2007;53:306–321 DOI: 10.1159/000103924

Screening Candidate Longevity Therapeutics Using Gene-Expression Arrays

Stephen R. Spindler Patricia L. Mote

Department of Biochemistry, University of California, Riverside, Calif. , USA

However, because the mice die mostly of cancer, only che-mopreventives active against specific cancers can be identi-fied by such studies. The studies were also time-consuming and expensive. We discuss high-density microarray studies of the effectiveness of glucoregulatory drugs and putative cancer chemopreventatives at reproducing the hepatic gene-expression profiles of long-term and short-term CR. We describe the identification of one compound, metfor-min, which reproduces a subset of the gene-expression and physiological effects of CR. Conclusion: Taken together, our results suggest that gene-expression biomarkers may be su-perior to lifespan studies for initial screening of candidate longevity therapeutics. Copyright © 2007 S. Karger AG, Basel

Introduction

At present, there are no authenticated longevity phar-maceuticals. This situation does not indicate that such compounds do not exist or cannot be developed. Rather, it indicates that we have not found an effective means for identifying such pharmaceuticals. Assays involving lifes-pan studies in model organisms have practical and theo-retical limitations. Therefore, some gerontologists con-jecture that aging must be fully understood before effec-

Key Words Caloric restriction mimetics � Insulin/IGF-I signaling � Drug development � Drug discovery � Lifespan � Microarray

Abstract Background: We review studies showing that CR acts rap-idly, even in late adulthood, to extend health- and lifespan in mice. These rapid physiological effects are closely linked to patterns of gene expression in liver and heart. Non-hu-man primate and human studies suggest that the signal transduction pathways responsible for the lifespan and health effects of caloric restriction (CR) may also be involved in human longevity. Thus, pharmaceuticals capable of mim-icking the effects of CR (and other methods of lifespan ex-tension) may have application to human health. Objective: We show that lifespan studies are an inefficient and theo-retically problematic way of screening for longevity thera-peutics. We review studies suggesting that rapid changes in patterns of gene expression can be used to identify pharma-ceuticals capable of mimicking some positive effects of ca-loric restriction. Results: We present a traditional study of the effects of melatonin, melatonin and pregnenolone, aminoguanidine, aminoguanidine and � -lipoic acid, amino-guanidine, � -lipoic acid, pregnenolone, and coenzyme-Q 10 on the lifespan of mice. No treatment extended lifespan.

Received: February 22, 2007 Accepted: March 28, 2007 Published online: June 15, 2007

Stephen R. Spindler, PhD Department of Biochemistry, University of California 3401 Watkins Drive Riverside, CA 92521 (USA) Tel. +1 951 827 3597, Fax +1 951 827 4434, E-Mail [email protected]

© 2007 S. Karger AG, Basel 0304–324X/07/0535–0306$23.50/0

Accessible online at: www.karger.com/ger

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tive therapeutics can be developed. However, drug discovery and development have a long and successful history of using rapid, surrogate assays for identifying candidate therapeutics. Most of the medicants currently used to treat human diseases were initially discovered us-ing such surrogate assays, often without knowledge of the molecular mechanisms of the disease or the therapeutic. Thus, validated, surrogate assays may greatly enhance our ability to identify and develop longevity therapeu-tics.

Long-term CR (LTCR), undernutrition without mal-nutrition, usually started shortly after weaning, is a highly effective means of extending lifespan and reduc-ing the incidence and increasing the mean age of onset of many age-related diseases, including cancer, diabetes, renal failure, and some forms of neurodegeneration [1] . Disrupted insulin/insulin-like growth factor I (IGFI) signaling produces similar physiological and lifespan ef-fects, and in combination with LTCR, it can additively extend mammalian lifespan [2, 3] . Other long-lived mouse mutants also have been identified, suggesting that other, potentially druggable pathways may exist for ex-tending lifespan and ameliorating age-related diseases [4, 5] .

LTCR is usually begun soon after weaning in mam-mals. When CR is initiated in older B6C3F1 mice, it be-gins to extend their health and lifespan within 8 weeks [6, 7] . This extension of lifespan results primarily from reduced tumor-related mortality, especially reduced mortality from hepatocellular carcinoma (HCC), the ma-jor cause of mortality in this strain of mice. During the 8 weeks required to reduce mortality, 71% of the gene ex-pression changes induced by LTCR are reproduced in the livers of these mice ( table 1 ) [6–8] . When old LTCR mice are shifted to a control diet, almost all of the LTCR-re-lated gene expression reverts to control levels within 8 weeks [7, 9] . Similar results are found with heart gene ex-pression, although a smaller proportion of the LTCR re-sponsive genes are affected [9] . Thus, the physiological effects of CR appear to be closely linked to the changes it induces in global patterns of gene expression. This close linkage suggests that these changes can be used for screen-ing potential therapeutics for their CR-like effects on mammalian physiology. Such assays should avoid the ex-pense, time, and theoretical problems associated with lifespan assays in model organisms (see below). To test this hypothesis, we evaluated 4 potential therapeutics for their ability to reproduce the effects of LTCR in the liver of mice [10, 11] . We identified metformin as one such compound.

Are Lifespan Studies the Best Way to Search for Longevity Therapeutics?

The development of assays for longevity pharmaceu-ticals is problematic. Screening using short-lived organ-isms such as nematodes and flies is of unknown efficacy, and the results of such screening can be inconsistent [12–14] . Among the difficulties of such assays is the quantification of the calories consumed by each indi-vidual in the study. Historically, rodent lifespan studies have been the accepted method for screening potential longevity therapeutics. The NIA Interventions Testing Program is using this approach currently [15, 16] . The NIA began this effort after decades of limited success searching for physiological biomarkers capable of rap-idly detecting the underlying rate of aging. However, mouse lifespan studies suffer from limitations as well, many of which are illustrated by the study shown in fig-ure 1 .

We used cohorts of 60 B6C3F1 mice, a long-lived F1 hybrid strain, to assay the effects of 6 dietary supple-ments on lifespan. The mice were shifted to chemically defined diets and received either no supplements (con-trol) or melatonin; melatonin and pregnenolone; amino-guanidine; aminoguanidine and � -lipoic acid; or amino-guanidine, � -lipoic acid, pregnenolone, and coenzyme-Q 10 ( fig. 1 ). None of the compounds produced a statistically significant effect on lifespan. These data might be interpreted as evidence that the compounds have no affect on health or lifespan, at least in mice. However, most rodents die of a few characteristic dis-eases. In mice, these are often lymphoma or hepatoma [6, 7, 17] . Even the 4-way-cross mouse used by NIA Inter-ventions Testing Program suffers from this limitation [15, 16] . Between 48 and 80% of these mice die of tumors, although they die from a somewhat wider array of tu-mors than do most laboratory mice. 72–75% of the B6C3F1 mice we used die of hepatomas [7] . Thus, the lifespan studies described above would detect only sup-plements which intervene in spontaneous tumorigene-sis . If one or more of the supplements improved aging in another organ, such as brain or heart, this effect would not be detected. Further, the study required 300 singly caged mice, and lasted for 45 months. It would have last-ed even longer if one of the treatments had extended lifespan. Thus, this type of screening is time consuming, expensive, and limited in its scope. Finally, the use of shorter-lived, enfeebled rodent strains would introduce further confounds into the studies.

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What Are We Measuring when We Perform Lifespan Studies?

Some might argue that such lifespan assays should detect the action of compounds that slow the underlying rate of aging, and that this action would slow the progress of most or all age-related diseases. Gerontologists often conjecture that CR slows the underlying rate of aging be-cause it can increase maximum lifespan in some organ-isms, including mice. However, CR can extend the maxi-

mum lifespan of mice by decreasing the rate of tumor growth [ 6, 7 ; and Spindler, unpubl. results]. Whether de-celerated tumor growth is rightly regarded as decelerated aging is open to question. But, few cancer chemothera-peutics would be regarded as longevity pharmaceuticals when administered to healthy subjects. Thus, the concept of underlying rate of aging, which has never been well defined, may have little useful meaning.

In fact, the effects of CR on cancer mortality may be incidental to its role in evolution. Widely accepted evolu-tionary theory holds that CR evolved early in metazoans as an adaptation to boom and bust cycles in the food sup-ply [18] . Since selection acts on reproductively active members of a population, it is difficult to rationalize the potent anticancer effects of CR with this theory. Cancer rates are low during the reproductive period of most mam-mals, and few individuals live long enough to die of cancer in the wild [19] . Interestingly, CR can reduce the growth rate of a mutationally induced tumor in nematodes, even though nematodes are largely postmitotic and do not nor-mally die of cancer [20] . Thus, the ancient pathways con-trolling longevity in metazoans may oppose neoplasms even in organisms not subject to them.

These considerations suggest that the anticancer ef-fects of CR arose by co-selection for another trait. We have proposed that this trait is the role played by cells as reser-voirs of metabolic energy [1] . Our high-density microar-ray studies identified a set of genes that respond similarly to CR in heart and liver [1] . The functions of these genes are consistent with the general, CR-related reduction in protein, RNA, lipid, and DNA synthesis reported in LTCR rodents [8, 21–23] . The tissue-specific changes in gene ex-pression we found are consistent with increased cell death and replacement in the mitotic liver, and with increased protein, nucleic acid, and lipid turnover in the postmi-totic heart [1] . These effects may lead to many of the anti-cancer and health benefits of CR.

Most cancers are derived from mitotically competent cells [24] . Cell division is required to genetically fix onco-genic mutations. While mitotic and postmitotic cells de-grade cellular protein and lipid for energy, some mitotic tissues, including liver and lung, undergo a profound, rap-id, and reversible loss of cell number (via apoptosis, necro-sis, and autophagic cell death) [25, 26] . This cell death preferentially affects preneoplastic and neoplastic cells [25] . Thus, the longevity effects of CR in mice may be de-rived in part from cell death in mitotically competent tis-sues, and protein turnover and cellular repair in both mi-totic and postmitotic tissues [1] . In this state, feeding in-duces a period of intense resynthesis and cell division (in

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Fig. 1. Longevity of mice treated with dietary supplements. A co-hort of mouse chow fed, male B6C3F1 mice (Harlan) were divided into groups of 60 mice when they were 14 months of age. Thereaf-ter, they were fed either control diet alone ( + ; AIN-93M; 84 kcal/week), or control diet with melatonin ( _ ; 41 � g/kg body weight/day), melatonin and pregnenolone ( o ; 41 and 200 � g/kg body weight/day, respectively), aminoguanidine ( p ; 65 mg/kg body weight), aminoguanidine and � -lipoic acid ( X ; 65 and 73 mg/kg body weight), or aminoguanidine, � - lipoic acid, pregnenolone, and coenzyme-Q 10 ( y ; 65, 73, 0.2, and 12 mg/kg body weight). Mice were fed three times weekly, and all food was eaten. Except for melatonin, supplements were mixed with the powered diet and cold-pressed into 1-gram pellets (BIO-SERV, Frenchtown, N.J., USA). The food was stored at 4 ° C until used. Melatonin was ad-ministered in acidified tap water (13.7 mg/l, adjusted to pH 4.0 with HCl) in brown water bottles from 5 p.m. to 8 a.m. The mice consumed approximately 2 ml of water during this time. From 8 a.m. to 6 p.m. the animals received the same acidified tap water as the other animals. All water bottles were changed weekly. A 12-hour light/dark cycle was utilized. The percentage of mice remain-ing alive at the end of each month is plotted.

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some mitotic tissues). Alternating cycles of degradation and resynthesis may drive self-renewal and the elimina-tion of neoplastic and preneoplastic cells.

Should We Wait for Mechanism-Based Drug Development?

What is the best way to identify longevity pharmaceu-ticals? One approach would be to wait until aging is com-pletely understood, allowing the development of mecha-nism-based drugs. Some mechanism-based therapeutics are being used to treat patients. While there have been successes, there have also been well-publicized failures. The vast majority of the therapeutics in use today were developed without a mechanistic understanding of either the disease targeted or the drug tested. For example, long before the mechanisms of neoplastic transformation were understood, there were effective chemotherapeutics.

The development of metformin as an antidiabetic is an-other example of such drug discovery [27] . Treatments for diabetes mellitus existed for years to centuries before there was any knowledge of their physiologic mechanisms of ac-tion. The French lilac, Galega officinalis , was used in me-dieval times to relieve the excessive urination accompany-ing diabetes mellitus. Centuries later, the active agentwas identified as isoamylene guanidine. Independently, through a fortuitous study involving mistaken assump-tions, guanidine infusion was found to lower blood glucose concentrations. In the 1950s, this led to the development of biguanides, including metformin and phenformin, which were less toxic than guanidine. Following its me-dicinal use in Europe for 20 years, metformin was finally approved for use in the USA in 1995. Although now off patent, it remains a key treatment and preventative for type 2 diabetes. The molecular mechanisms of metformin ac-tion are still unclear, although they appear to include sig-naling through AMP-activated protein kinase [28] .

Does CR Work in Humans?

Some have argued that any intervention, including CR, is unlikely to extend human lifespan [29] . Phelan and co-workers, Rose and Demetrius, and De Grey have all ar-gued that the life history of humans presents little selec-tive pressure for a robust CR response [30–32] . While the validity of these hypotheses can be debated, the efficacy of human CR is unlikely to be known soon. However, even if CR does not extend human lifespan, it remains likely

that CR mimetics will have applications to our health. Analysis of data from the Baltimore Longitudinal Study of Aging suggests that physiological biomarkers associ-ated with lifespan extension in monkeys and rodents also are associated with enhanced lifespan in humans [33] . The molecular-genetic processes leading to lifespan ex-tension in CR animals may be active in some fortunate humans, perhaps due to our genetic diversity.

CR produces changes in human physiology closely as-sociated with enhanced longevity in model organisms. The consumption of a diet reduced 20% in calories by Oki-nawan adults in the 1970s was accompanied by a 50% re-duction in the mortality rate of 60- to 64-year-olds, and a 30–40% reduction in the death rate from malignancy, and cerebral vascular and heart disease, compared with the rest of Japan [34] . Okinawans who consumed a Western-style diet had mortality and morbidity rates approaching those of the west. Another study, often termed the Vallejo Nursing Home Study, found that CR reduced time in the infirmary (123 vs. 219 days; p ! 0.001) and produced nu-merically fewer deaths during a 3-year period (6 versus 13, not significantly different) in healthy volunteers over 65 years of age [35, 36] . Recently, it has been postulated that this may have been a study of alternate day hypo- and hy-percaloric diets rather than continuous CR [37] . A longi-tudinal human CR study serendipitously conducted on 8 healthy, nonobese humans eating a low-calorie diet for 2 years, found physiologic, hematologic, hormonal, and bio-chemical changes which resemble those of CR in rodents and monkeys [38] . Significantly reduced risk factors for atherosclerosis and better diastolic heart function were found in adult humans who had been CR for an average of 6 years [39–41] . Further, exercise training, decreased adi-posity, low protein intake, and LTCR in humans are all associated with low levels of plasma growth factors and hormones (especially IGFI) [e.g. 3–5, 42 ]. Lower IGF-I levels are associated with reater longevity in mice, Dro-sophila and C. elegans. Higher levels of these hormones and growth factors are linked to increased risk of cancer [42] . Thus, CR appears to produce many effects in humans which recapitulate those produced in invertebrates, ro-dents, dogs, and nonhuman primates.

Longevity Pharmaceuticals Should Be Efficacious whether or Not CR Extends Human Lifespan

Leaving aside the quality of life issues associated with prolonged human CR, dieting still is probably not the ideal way for humans to enjoy its health and longevity

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benefits. Human malnutrition is associated with short stature, late reproductive maturation, lower baseline go-nadal steroid production, suppressed ovarian function, impaired lactation, reduced fecundity, weakened im-mune function, lower basal metabolic rate, reduced body temperature, enhanced irritability, reduced social interactions, loss of male libido, and in a few cases, hord-ing behavior [43–51] . These afflictions may not be the result of low quality diets, since similar physiological symptoms have been reported among CR rodents [43, 44] . In some, but not in all, studies of the association between body mass index and mortality in humans, a low BMI is associated with increased mortality [52–56] . For example, in a study of 14,407 individuals between 50 and 75 years of age, a BMI below 25 was associated with a steady increase in the probability of death from all causes in both men and women, after controlling for confounding variables [56] . Interestingly, enhanced mortality was mostly due to an increase in infectious and organic diseases. These results appear consistent with the immune suppression often reported in CR ro-dents and malnourished humans. Thus, it is possible that CR may have cumulatively negative consequences for humans. This would not be surprising, since humans are not confined to barrier vivaria, as are animals in most CR studies.

However, it is highly likely that the health- and life-span effects of CR can be separated from its negative ef-fects. Co-selection of most of the responses to CR item-ized above is easily rationalized as evolutionarily adap-tive. Thus, there is no reason to assume that they all are mediated by a single signal transduction pathway. In-deed, LTCR and dwarfism each can extend the lifespan of mice alone, while together they have an additive effect on lifespan. Our microarray studies indicate that CR and dwarfism signal through both common and distinct pathways to produce their lifespan effects (see below). Thus, multiple signaling pathways appear to be involved in their extension of mammalian lifespan. This suggests that the positive and negative effects of CR and dwarfism on physiology are due to multiple pathways, and therefore may be separable.

Humans may not be the longest lived animals. A Mar-ion’s tortoise was reported to have died at more than 150 years of age [57, 58] . Bowhead whales also may live to be more than 100 years old in the wild. Since 1981, Inupiat villagers along the north coast of Alaska have found six harpoon points made of ivory and stone in the blubber of freshly killed bowhead whales [59] . These harpoon points reportedly have not been used by whalers since

the 1880s, suggesting the whales were at least 100 years old when killed. Aspartic acid racemization studies of 94 eye lens nuclei from 84 individual bowheads suggest that five males were 113, 136, 160, 174, and 213 years old [60, 61] . Thus, these species may be capable of extreme lon-gevity without the downsides associated with CR or dwarfism.

Adaptations resulting in extreme longevity might in-volve either qualitative or quantitative changes in gene expression. Small molecule therapeutics are being devel-oped for genetic diseases caused by alterations in the lev-el and the activity of specific proteins [62, 63] . For ex-ample, clioquinol is able to downregulate the expression of a mutant Huntington gene mitigating its pathology in a Huntington’s disease model [62] . In another example, the abnormal chromosome segregation and binucleation resulting from a point mutation in the LMNA gene, which is responsible for Hutchinson-Gilford progeria syndrome, can be largely rescued with small molecule farnesyltrans-ferase inhibitors [64] . Likewise, the genes responsible for extreme mammalian longevity may be susceptible to small molecule therapeutics. However, the first require-ment for developing such therapeutics is a rapid assay for identifying their effects. We have begun to develop and validate one such surrogate assay.

Like CR, Longevity Therapeutics Could Act Rapidly

Aging is usually assumed to result from the gradual accrual of essentially irreversible oxidative or other dam-age to macromolecules. In this context, CR is often viewed as preventing or slowing the accumulation of such dam-age, thereby slowing the process of aging [65] . The inter-pretation of most CR studies has been strongly influenced by this view. Most cross-sectional studies of mammalian aging have been interpreted as if they were performed longitudinally, e.g. see the discussion and studies in Van Remmen et al. [66] . LTCR is almost always assumed to have prevented the incremental accumulation of irrevers-ible damage. However, in many of these studies it is not clear whether CR reduced the rate of damage or increased the rate of repair.

Ideal therapeutics act rapidly. Most people do not wor-ry about the effects of aging or lifestyle until they begin to experience the diseases associated with them. A lon-gevity therapeutic only capable of decreasing the accu-mulation of irreversible damage would do little to im-prove the health and longevity of the elderly. This type of drug would have to be consumed from birth through old

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age. Instead, an ideal longevity therapeutic would act rap-idly to reduce age-related morbidity and mortality in the elderly. To test the hypothesis that CR can act rapidly, we conducted genome wide expression analysis of very old, control-fed mice shifted to a CR diet for just 4 weeks [8] . Because most mice of the strain used for these studies die of liver tumors, we focused first on this organ. The liver also has a major role in drug metabolism, glucose homeo-stasis, insulin responsiveness, and IGFI synthesis. Each of these functions is thought to be important in health and lifespan. We found that 4 weeks of CR reproduced 55% of all of the gene-expression effects of LTCR in el-derly mice. For age-responsive genes, 4 weeks of CR re-produced � 70% of the effects of LTCR. These results sug-gested to us that CR could act rapidly and proactively to initiate its health and lifespan effects. Recently, the im-portance of regulated apoptotic and autophagic turnover of damaged cells in lifespan determination has begun to be better appreciated [1] .

CR Can Act Rapidly, Even Late in Life, to Initiate Lifespan Extension

The effect of CR on lifespan is proportional to its du-ration [67] . However, CR was thought to extend life span only when it was initiated in mice which were 12-months old or younger [68] . Studies in rats suggested that CR is much less effective in older animals [69, 70] . Our results, described above, led us to test the possibility that CR could rapidly initiate its lifespan effects. To test this hy-pothesis, control fed, male, B6C3F1 mice were shifted to CR at the beginning of the accelerated mortality phase of their lifespan, at 19 months of age ( fig. 2 ). CR began to extend lifespan and reduce tumor incidence within 8 weeks ( fig. 2 ) [7] . Linear regression and breakpoint anal-ysis revealed that CR induced a 3.1-fold decrease in mor-tality within 2 months [6, 7] . CR also induced a 42% in-crease in time to death, and a substantial increase in mean (4.7 months) and maximum (6.0 months) lifespan.

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Fig. 2. The effects of CR begun immediately before the onset of the accelerated mortality phase of the lifespan curve. a The lon-gevity of mice switched from control to CR at 19 months of age. The percentage of mice remaining alive at the end of each month is shown for CR mice ( y ) and control mice ( U ). Shown is the mor-tality trajectory of the mice at the beginning of the experiment (––––), the slope of the accelerated mortality phase of the survival curve for the control mice (– – –), the approximate mortality tra-jectory of the CR mice between the first and second breakpoints in the survival curve (· · · · ·), and the mortality trajectory after the

second breakpoint (– · – · –). b A theoretical survival curve assum-ing that mortality of the CR mice results from a reduced rate of tumor growth and a constant rate of tumor formation. The low-ercase letters designate different parts of the curve. c A theoretical curve describing the results expected if mortality in the CR group results from reduced rates of tumor formation and a constant rate of tumor growth. Figure adapted from Spindler [6] , with permis-sion. For further explanation of the theoretical curves shown in b and c , see Spindler [6] .

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In our hands, CR begun just after weaning also extends the remaining lifespan of these mice by about 40%.

The shapes of the survival curves suggest that the onset of CR reduced the rate of tumor growth more than the rate of tumor onset ( fig. 2 ) [6] . Follow-up studies suggest that the initiation of CR in older mice decreases the growth rate of spontaneous hepatocellular carcinomas, perhaps by increasing the rate of apoptotic or autophagic cell death [Spindler, Higami and Shimokawa, unpubl. results].

The reason that later-life CR was effective in extending lifespan in our studies and not in the rat studies is not known. However, it may be related to species-specific dif-ferences in the susceptibility of mice and rats to late-life CR, or to subtleties in the animal husbandry used in the studies. Examples of such methodological effects are the importance of a phased introduction of CR for lifespan extension in older mice and of companionship and/or warmth for the longevity of some types of dwarf mice [68, 71] .

Demographic studies in Drosophila have shown that their mortality rate is rapidly responsive to dietary calories [72] . Shifting the flies from a control to a CR diet deceler-ates their short-term risk of death within two days. Like-wise, shifting from a CR to a control diet accelerates their short-term risk of death in 2 days. The similarities between these results and ours suggest that the rapidity and revers-ibility of CR may be phylogenetically conserved. This is consistent with most evolutionary theories of CR. Organ-isms must be able to adapt their physiology and behavior rapidly to changes in the environment during the boom and bust cycles common to the life histories of most spe-cies.

Gene Expression Biomarkers Are Closely Linked to the Physiological Actions of CR

Gene expression patterns may be indicators of biolog-ical status. For example, the expression patterns of pri-mary tumor cells may be useful for predicting outcomes such as chemosensitivity, metastases, and survival [73, 74] . To investigate the relationship between gene-expres-sion and the health and longevity effects of CR, we exam-ined the induction of LTCR-like gene expression profiles in old mice shifted from a control diet to CR. We found that 2, 4 and 8 weeks of CR, initiated in older mice, pro-gressively induces LTCR-like gene expression profile in the liver [6] . The major response pattern is shown in fig-ure 3 . Thus, during the period of time required to initiate the longevity and anticancer effects of CR, the gene-ex-

pression profile of LTCR was substantially reproduced in liver. A similarly rapid response was found in heart, al-though fewer LTCR-responsive genes changed expres-sion in 8 weeks [9] . Nevertheless, the rapidly responsive genes appear to be key for reducing blood pressure, fibro-sis, and tissue remodeling, and for increasing cardiac contractility [9] . CR did not enhance apoptosis-related gene expression in heart, as it did in liver [1, 9] . Interest-ingly, in both heart and liver, the vast majority of the LTCR-responsive genes returned to control expression within levels 8 weeks of shifting to a control diet. Thus, essentially all LTCR-responsive genes are rapidly respon-sive to caloric intake.

CR Is Proactive rather than Protective

Our results are most consistent with the idea that CR rapidly and proactively alters gene expression and physi-ology to extend lifespan and improve health. Therefore, its major effect is unlikely to be preventing irreversible molecular damage. This view is consistent with the de-mographic studies in Drosophila discussed above [72] .

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Fig. 3. Dynamics of the gene expression response in old control mice shifted to CR for 2 weeks (CR2), 4 weeks (CR4), and 8 weeks (CR8), and in old long-term CR (LTCR) mice shifted to control feeding for 8 weeks (CON8). The most common pattern of gene expression found is shown. Adapted from Dhahbi et a. [7] , with permission.

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Biochemical and physiological studies conducted in ro-dents and humans also support this view. There is a small but growing literature regarding the effects of short-term CR on mammalian physiology and biochemistry. For ex-ample, just 1–3 months of food restriction can signifi-cantly increase the latency and reduce the incidence of spontaneous cancer over the entire lifespan of a mouse [75] . Just 1 week of CR induces apoptosis of the glutathi-one S-transferase-II positive (an immunohistochemical marker of preneoplastic liver cells) hepatocytes of old mice [76] . Forty-percent food restriction for 3 months eliminates 20–30% of liver cells through apoptosis, and reduces the number and volume of chemically induced preneoplastic foci by 85% [77] . In AD-transgenic mice, 6 and 14 weeks of CR substantially decreases the accumula-tion of A � plaques and astrocytic activation [78, 79] . Six weeks of CR in the old mice significantly reduces whole brain carbonyl and cortex sulfhydryl content (oxidative damage), although the effects are not as great as those of LTCR [80] . Similarly, 3–6 weeks of ad libitum feeding fully or partially reverses the effects of LTCR on the car-bonyl and sulfhydryl content of whole brain and heart [80] . In humans, short-term CR rapidly restores insulin sensitivity and lowers blood glucose levels in type 2 dia-betics [81, 82] . Moderate sustained weight loss from a CR diet can increase life expectancy and produce beneficial physiological changes related to diabetes, hypertension, hyperlipidemia, sleep apnea, and cardiorespiratory and other chronic degenerative diseases [83] . Short-term CR improves disease-related biomarkers associated with ag-ing in old, male rhesus monkeys [84] . Together, these re-sults suggest that CR can act rapidly to produce a physi-ological state associated with health and longevity in mammals, including humans.

Microarray-Derived Gene-Expression Patterns Can Be Used as Surrogate Biomarkers for Drug Discovery

The close temporal linkage between the health, lon-gevity and gene expression led us to hypothesize that the gene-expression changes induced by CR could be used as surrogates in drug discovery. To test this hypothesis, we evaluated the ability of 5 potential CR mimetics to repro-duce the gene-expression profiles associated with CR in mouse liver using Affymetrix microarrays [11] . We fo-cused the first studies on liver for the reasons given above. The linkage between CR, insulin, IGFI and the rate of ag-ing [4, 85] suggested that the glucoregulatory compounds metformin (MET), glipizide (GLIP), GLIP plus MET

(GM), and rosiglitazone (ROS) might be candidate CR mimetics. MET, a biguanide, increases insulin sensitivity in liver, muscle and adipose, and decreases hepatic glu-cose production and output [86] . ROS, a thiazolidinedi-one, is a peroxisome proliferator activated receptor (PPAR) gamma agonist that may improve insulin sensi-tivity in muscle and liver by interfering with the expres-sion and release of mediators of insulin resistance origi-nating in adipose tissue, such as ceramides, free fatty ac-ids, and adipocytokines [87] . GLIP, a sulfonylurea, is an insulin secretagogue in pancreatic � cells [88] . We also administered a combination of MET and GLIP, MG, be-cause glipizide enhanced insulin release might antago-nize the insulin-reducing effects of metformin on gene expression. Because of the importance of tumorigenesis in determining the lifespan of the mice, we also tested a putative chemopreventative, soy isoflavone extract (SOY), for its effects [89] . Soy isoflavones may act through vari-ous promiscuous nuclear receptors including the estro-gen, thyroid and PPARs [89] . One microarray study sug-gests that 19% of the effects of CR on gene expression may result from activation of signaling through the PPAR � receptor [90] .

MET, GLIP, GM, ROS or SOY were administered in the diets of mice for 8 weeks [11] . A control group re-ceived the diet free of drugs. All these groups were isoca-loric, and their weights did not vary significantly during the studies. Old control groups were included, which were either LTCR or control mice shifted to CR for 8 weeks (CR8). MET reproduced 75% of the gene expres-sion changes produced by LTCR. Eight weeks of CR re-produced only 71% effects of LTCR ( table 1 ). Eight weeks of MET treatment reproduced 74% of the gene expression effects of CR8 ( table 1 ). The other treatments were less effective. Thus, MET best replicates the gene-expression effects of LTCR.

The program Venn Mapper was used to investigate the similarities at increasing levels of statistical strin-gency [91] . MET and CR8 again yielded the highest number of genes overlapping those of LTCR ( fig. 4 ). We also determined the number of LTCR-like changes at increasing fold-change thresholds. MET, followed by CR8, again overlapped the most with LTCR [11] . These results indicate that MET reproduces the effects of LTCR even better than CR8, while the other treatments are less effective.

We also used GenMAPP and MAPPFinder to deter-mine the number of gene ontology (GO) terms common to LTCR and each treatment [11] . The number of overlap-ping terms is a nonbiased, quantitative measure of their

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functional similarity [92, 93] . MET produced the highest number of overlapping GO terms, outstripping even the number produced by CR8 [11] . Thus, 8 weeks of MET treatment surpassed even 8 weeks of CR at producing a LTCR-like gene expression profile. These results suggest that MET may have significant LTCR-like effects on physiology and health. Based on these data, MET is a can-didate CR mimetic.

Some Physiological Effects of MET Are Consistent with Its Gene-Expression Profile

Consistent with the results reviewed above, MET treatment of female HER-2/neu mice increased their mean and maximum life spans by 8 and 13%. Also, MET reduced the incidence and size of mammary adenocar-cinomas and increased the latency of the tumors. A low-er dosage of MET prolonged the survival of a transgenic mouse model of Huntington’s disease by 20% [94] . Phen-formin, a biguanide which is structurally and function-ally related to metformin, extended the lifespan of C3H mice 23% while reducing tumor incidence by 80% [95, 96] . In humans with type 2 diabetes, MET may be asso-ciated with reduced cancer risk [97] . MET also protects hamsters fed a high-fat diet from malignant, hyperplas-tic and premalignant pancreatic lesions [98] . Indirect evidence suggests that signaling through AMP-activat-ed protein kinase could be involved in both the antidia-betic and the anticancer effects of MET [99] . AMP-acti-vated protein kinase signaling is capable of extending

lifespan in Caenorhabditis elegans , Drosophila and yeast [100–102] . MET treatment is also effective against poly-cystic ovary syndrome [103] . MET therapy also has been shown to inhibit the development of metabolic syn-drome in humans [104] . Metabolic syndrome is associ-ated with increased cardiovascular- and diabetes-asso-ciated morbidity and mortality. Together, these results suggest that use of microarray biomarkers has identified a promising candidate CR mimetic. However, it remains to be seen whether long-term treatment of healthy, long-lived mice with metformin will extend lifespan. Even

Table 1. Numerical overlap between the transcriptional effects of LTCR, CR8 and each of the drug treatments

Treatmentgroup

Number of LTCR-likeresponses*, %

Number of CR8-likeresponses*, %

CR8 71 –MET 75 74GLIP 16 17GM 20 23ROS 17 13SOY 11 13

* Number of LTCR- or CR8-responsive gene-expression changes produced by each treatment. MET = Metformin; GLIP = glipizide; GM = the combined administration of GLIP and MET; ROS = rosiglitazone; SOY = soy isoflavone extract. The percent-age of changed genes identical to those changed by LTCR or CR8 are shown. This table is adapted from Dhahbi et al. [11], with per-mission.

0

350 MET

CR8

ROS

GM

Nu

mb

er

of

ge

ne

s>2

50

100

150

200

250

300

GLIP

SOY

– >10 >15 >20 >22– – – –

Values

Fig. 4. The number of LTCR-like genes in-duced by each treatment at increasing lev-els of statistical stringency. Affymetrix data were filtered and normalized using MAS 5.0 and RMA, and subjected to multi-class SAM analysis followed by t tests to determine the effects of each dietary or drug treatment. The differentially ex-pressed genes were merged and analyzed using Venn Mapper to identify genes sig-nificantly affected by LTCR and each of the treatments. The comparisons were performed at a fold-change cut-off of 1.2 and the indicated z values. From Dhahbi et al. [11] , with permission.

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low level toxicity, which might not be recognized during the drug approval process, might limit the efficacy of a drug taken over the course of a lifetime. Therefore it is important that we understand the entire gene-expres-sion profile produced by a drug or treatment, so that we can more accurately predict its health effects.

Gene-Expression Biomarkers of Longevity

To broaden our understanding of longevity-associated gene expression, we investigated the hepatic gene-expres-sion patterns associated with CR and dwarfism [2] . LTCR and dwarfism together had additive effects on the expres-sion of 100 genes ( fig. 5 a). For example, if CR and dwarf-ism each induced the expression of a gene by 2-fold, then together they induced its expression by 4-fold. Dwarfism also affected the expression of 212 other genes, whether or not CR was present ( fig. 5 a). Likewise, CR affected the ex-pression of 77 genes, whether or not dwarfism was pres-

ent. One of a number of possible mechanisms by which such effects could be mediated at the molecular level by two signaling systems is shown in figure 5 b.

CR and dwarfism produced changes in gene expres-sion consistent with increased insulin, glucagon and cat-echolamine sensitivity. We found additive effects of CR and dwarfism on genes associated with apoptosis, gly-colysis, signal transduction, translation, RNA splicing, chaperones, transcription and xenobiotic metablism ( fig. 6 ). Both treatments also strongly downregulated genes associated with cholesterol, fatty acid, and lipid biosynthesis, and immune function ( fig. 6 ). However, there was no evidence for additivity in these effects. In-stead, they often affected the expression of different genes in the same pathways. Together, these sets of genes, par-ticularly those additively affected should prove useful for identifying potential longevity therapeutics.

A number of other genetic mouse models have been reported to enhance longevity, and these models may provide additional biomarkers for drug discovery [4, 5,

Treatment Dwarfism LTCR

212 genesGene expression100 additive or

interacting genes77 genes

Lifespan extension by DF only

Lifespan extension by CR only

Lifespan extension by CR and DF together

Phenotype

a

b Dwarfism LTCR

Individual effects

Independent-

additive effects

Interaction between

diet and genotype

Gene 1 Gene 2

Gene 3

Gene 4

Fig. 5. A summary of hepatic gene expres-sion profiling of normal and dwarf mice fed ad libitum or LTCR. a Dwarfism changed the expression of 312 genes (212 + 100 genes), LTCR changed the expression of 177 genes (77 + 100), and dwarfism and LTCR together changed the expression of 389 genes (212 + 100 + 77 genes). Of the 100 additively changed genes, 95 showed no statistical evidence of an interaction be-tween dwarfism and CR, while 5 showed evidence of an interaction. b A model for the regulation of 212 genes by dwarfism (hypothetical gene 1), 77 genes by CR (hy-pothetical gene 2), 95 genes additively by CR and dwarfism (hypothetical gene 3), and 5 genes interactively by CR and dwarf-ism (hypothetical gene 4). The double-headed arrow indicates a physical or func-tional interaction between transcription factors bound to adjacent sites which syn-ergistically alters their activity. Adapted from Tsuchiya et al. [2], with permission.

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105] . For example, overexpression of the Klotho gene product, which binds to a cell surface receptor to suppress action of the insulin/IGFI signaling pathway, can extend mouse lifespan by 20–30% [4] . Microarray analysis of these mutants may provide additional gene expression biomarkers for drug discovery. Dietary manipulations other than CR, such as methionine or tryptophan restric-tion, or every-other-day feeding, may also provide useful biomarkers [106–112] .

Distinguishing the Beneficial Effects of CR from Its Negative Effects

One important aspect of drug screening, alluded to above, is the ability to distinguish positive from negative physiological outcomes. As a model for interpreting gene expression profiles, we reasoned that low insulin diabetes might produce a gene expression signature partially over-lapping that of LTCR. Forty percent LTCR in mice is characterized by a 66% reduction in fasting insulin levels [113] . To explore the relationship between CR and low-insulin diabetes, we profiled the effect of streptozotocin-induced diabetes (SID) on mRNA expression in mouse liver [114] . We found that SID, like LTCR, enhances the expression of hepatic genes associated with protein deg-radation and apoptosis. However, while LTCR enhanced

transcript levels associated with cell and protein renewal, SID altered gene expression in a manner consistent with reduced cell and protein renewal. These results empha-size the importance of the combinatorial effects of genes, and not simply the over- or underexpression of individu-al genes, to a physiological outcome.

How Does Altered Insulin and IGFI Signaling Enhance Lifespan?

In the mouse, as we show above, lifespan studies are primarily studies of the effects of treatments on tumor-igenesis, frequently HCC. Insulin and/or IGFI signaling are reduced in most or all models of extended longevity, including methionine restriction and Klotho overex-pression [5, 10, 106, 115] . In many tumors, including HCC, the level of expression of the type I IGFI receptor (IGFR) has been correlated with disease stage, reduced survival, development of metastases, and tumor de-dif-ferentiation [116–118] . Reduction of insulin/IGFI sig-naling in mice by mutation, genetic manipulation, or Klotho overexpression enhances the rate of tumor cell apoptosis, reduces the number and the volume of pre-neoplastic lesions in the liver, delays tumor-associated mortality, and extends lifespan [115, 119] . A part of the antineoplastic effects of CR in the liver and other tissues

Dwarf

F

Transcription

Cholesterol synthesis

Fatty acid synthesis

Lipid transport

Immune system

Cell cycle

DNA replication

Nucleotide

metabolism

structure

Treatment CR

212 genesinteracting) genes

77 Genes

F Apoptosis

F Glycolysis

Signal transduction

Translation

RNA splicing

F Chaperone

F Protein turnover

F Oxidant metabolism

F Cholesterol synthesis

F Fatty acid synthesis

F Lipid transport

F Immune system

F Gluconeogenesis

F Beta-oxidation

Histone modulation

F

F

F Protein turnover

F Oxidant metabolism

Xenobiotic

metabolism

F

F

F

F

F

F

F

F

Cell cycle

F

DNA replication

F

Nucleotide

metabolism

Transport and trafficking

Cell adhesion and

structure

Treatment

Gene expression100 additive (or

77 genes

Gene ontology

F Apoptosis

F

Glycolysis

Signal transduction

Translation

RNA splicing

F

Chaperone

F Protein turnoverF Oxidant metabolism

F

Cholesterol synthesis

F

Fatty acid synthesis

F

Lipid transport

F

Immune system

F Gluconeogenesis

F

Beta-oxidation

Histone modulation

F Apoptosis

Glycolysis

Signal transduction

Translation

RNA splicing

F

Chaperone

F

F

Transcription

F Xenobiotic

metabolism

Apoptosis

Glycolysis

Signal transduction

Translation

RNA splicing

Chaperone

Fig. 6. Cellular processes responsive to dwarfism and CR in mice. Gene ontology classifications of regulated genes were de-termined manually by examination of the PubMed, GenBank, NCBI, Gene Cards, NetAffx, EMBL Bioinformatic Harvester, LocusLink, and MGI online databases. The consensus functional pathways and biological processes associated with each gene was judged by examination of the rel-evant literature. Pathways and processes shared by dwarfism and CR are shown in italics. Up and down arrows indicate that for that process or pathway most or all genes were increased or decreased, respec-tively, by the indicated treatment. The ab-sence of an arrow indicates there was a mixed response in that process or path-way.

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are probably the direct result of reduced IGFR signaling [120, 121] . IGFR is present at very low levels in normal hepatocytes [122] . Cells that do not express IGFR are resistant to transformation by any means [123] . How-ever, significant increases in insulin-like growth factor II (IGFII) and IGFR expression are found in human cir-rhotic liver (a preneoplastic state) and in some primary liver cancers versus normal adult liver [122, 124–127] . IGFII gene expression is activated during hepatocar-cinogenesis in some transgenic mice [128] . IGFR ex-pression is also upregulated in hepatoma cell lines de-rived from humans [129–133] , chickens [134] , and rats [135] . In several human HCC cell lines, blockade of IGFR with the selective inhibitor NVP-AEW541 in-duced growth inhibition, apoptosis, and cell cycle arrest [121] . Signaling of both IGFI and IGFII through the IGFR is associated with hepatocarcinogenesis and resis-tance to drug-induced apoptosis [136] . In hepatitis B-infected liver and hepatoma cells, expression of the viral HBx protein, which is important to HBV-associated car-cinogenesis, appears to induce the expression of IGFII and IGFR [137–139] . In such cells, elevated IGFR expres-sion appears to increase the mitogenic effect of IGFI and IGFII [138, 139] . While IGFI and IGFII are synthesized by hepatocytes, IGFII is also synthesized by resident macrophages, endothelial cells and stellate cells [140] . These studies suggest an autocrine or paracrine role for IGFI and IGFII in HCC growth and resistance to apop-tosis.

According to the classical view, the insulin receptor (IR) predominantly mediates anabolic effects, while the IGFR predominantly mediates antiapoptotic, mitogenic, and transforming effects [123, 141] . However, insulin can be a strongly antiapoptotic, co-mitogen in the liver and other tissues [142] . Several lines of evidence support a mitogenic and transforming role for the IRA splice vari-ant of the insulin receptor in hepatocarcinogenesis. Both IRA and IRB (IRB is the IR isoform normally found in insulin-responsive tissues) are expressed in hepatocytes and hepatoma cells [143, 143] . Both IGFI and IGFII are high-affinity ligands and activators of IRA. Activation of IRA can promote growth and protect malignant cells from apoptosis [144–146] . Binding of IGFII or insulin to IRA induces gene expression profiles which only partial-ly overlap those of IRB [147, 148] . In cells expressing only IRA, IGFII stimulates mainly the Shc/ERK branch of the insulin/growth factor signaling pathway, inducing mito-genesis and migration more potently than insulin [149] . In contrast, insulin is more potent than IGFII in stimu-lating signaling through the IRS/AKT pathway, leading

to enhanced glucose uptake and metabolism, protein synthesis and cell growth [149] .

Thus, it is highly likely that reduced insulin and IGFI signaling enhance apoptosis and reduce tumor cell growth and division in mice. These effects may be key to the anticancer and longevity effects of CR and the other means of lifespan extension in mice and possibly other organisms.

Conclusions

CR begun relatively late in the lifespan of mice rap-idly begins to decelerate mortality, extend remaining lifespan, and delay the onset and/or progression of can-cer as a cause of death. These health and longevity ef-fects coincide with a LTCR-specific gene-expression profile in the liver. This profile appears to be causally linked to the physiological effects of CR. We have used a LTCR-related profile as a biomarker to identify poten-tial CR mimetics. Metformin was one such potential mi-metic. Distinct patterns of gene expression induced by dwarfism and low insulin diabetes indicate that the combinatorial effects of many genes are important in reproducing the health- and lifespan extending effects of CR. These results suggest that longevity enhancing medicaments can be developed or discovered using such gene-expression biomarkers. It will be important to de-termine whether candidate longevity therapeutics can extend the lifespan of healthy individuals when taken over a lifetime.

Acknowledgements

The authors thanks their laboratory colleagues, cited in our articles above, for their hard work and many helpful discus-sions.

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